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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023274 ID=TCONS_00023274|Name=TCONS_00023274|organism=Clytia hemisphaerica|type=transcript|length=2143bp
aaattggtacccataaagaagccattgcagtgttaaaaattaacgtccaA
CTGCGccacatcatcaaaagttttggagggaaagtagatctagcacTCGT
GATGCATTTTCAccactattgagtagtgccggcattagggtaccactttc
aaaaaactctgatcaaagattttgcttggcctggattgagaaacttggtc
taGGTTATATTAAGGTCAGTGGTTGAGTCCCACAAAAGATGCTATATTAT
GTATATTATTCTAATCTCTTTTTAGGGTAGATACATGGTAGGtatataaa
aacaattaagTTAGGTTTTTTATTAGTAacagtttttcaaaatggcagca
CCAGCTGTCCAGAAGCGTGATGGAAGTGGTACGTACACATTTTCCAGTAG
GCCACATGCAATCCAACAACGAAAGAAATATAGGGACCCATATGAAAAgg
aaaACCAAGCACAGTCTATGTATGGTAATATTATGTATGATAGGAGAATT
GTAAGAGGAAATACTTATGCCCAACATATTTTGCCAGTGAGCTCACAACC
TGACCCTATTGAAATCCAGAAACAACAGGAAGCTCGTAGGAGGGCAATAG
CCCGAAAGAGAGCTAAGCAACATCTAAAATCACAAACACCAGAGCCGGTA
GATGGTAGGAAACATATTGATGTACAGACTGAATTATACTTAGAAGAATT
AACTGATCGTGTTGAAGAGGCAGATATTTCAACTCAAACAGATGCCTTCC
TGGATCGACCACCGACACCTTTGTTTATTCCAGCTAAGACTGGTATTGAT
GTTGCTACTCAAATCCTACAAGGAGAACTTTTCGACTTTGACCTTGAAGT
TAAACCCATATTGGAGGTACTTGTTGGTAAAACAGTTGAACAATCTCTTC
TGGAAGTCATGGAAGAGGAAGAACTAGCCAATCTACGTGCACAACAACGT
AGATTCGAAGAATTGCGTAATGCTGAGCTGGTTGAAACTCAACGTCTTGA
AGAACAAGAGAGGAGACACCGTGAAGAAAAAGAACGTAGAATGAGACAAC
AAATGGAAgtcttgaaaaaagaaaaagaaactacAGATAAATTGGCTGCC
AGAGCTTTTGCACAGaGTTACTTACAAGACTTGGTACCATCAGTCTTTGG
TACATTACACGATCATGGATACTTCTATGACCCAGTGGAAAGAGATGTTG
AAACACAATTCATGCCATGGTTAATGGAATCTGTGACAGTTGAACTGAAC
AAAGCTCGTGTGGCACGTGCTGTACTTGACAGTATCATTCGTGACACTGT
TACTAATCGTTTTGAAGTTTACAATAAACTTGACGAAGAAGCTGAACAAA
AAATTCGTGCTGTCATTGCGGCTGCAACACAAGCAATGCAGCCAATAACG
CCCTTACCTGACAAGGAAAGCGGTGAATCTGAAGAGGTCACCAAAGATGA
AGGAAGTGCTGGAGATGATAAACCACAACAACCAGAATCAGAATCTACTA
ACCAAGAAGATACTGGAGCTGAAGAACCTACACCGCCAGATTCACCACCA
AAACAAGATGGTGGTGATACTGCTGAATAAATATCCTAAATCCTACTTCT
TGTATATACCCTAATTTTTCTCTTCCTCTCAATAAATCATTTTTTATATa
tcttttaaattattttttctttttctaaaatggtCCTGTTTGACTTTATT
GCTAAAAATGAGTGTTTATATTGATGATAATGCCTGATTTTAGCTGGTGA
CAAAGCtttgacaaaaaattcaaaattcactttgcagGTAGGAGCaggta
tttttttatattttatttatcattATACCTATAGTAATATATTTTGGCCA
TGTTTTAAAAACTGTTCTTggaaatttttctggaaatgaccttttgaaat
ttagaagcatattttgaacaaattttggttgttctTTGTGAATCCTAAAT
GATTCTCGACTCCAAGGTCGAGAAATTTAAAGTTTGGTATTATGGTTTTG
TGAATGACAAATAATATTATTATAATGGAgaggaaaaaaatttattcagt
tGTAAATAACTCAATGATTATTATAATACTAAAATTAGTATTTGCTGGTT
CgattttcttttctaaaacTCATCACCACGCGTAATTCAGAAA Run BLAST on NCBI protein sequence of TCONS_00023274-protein >TCONS_00023274-protein ID=TCONS_00023274-protein|Name=TCONS_00023274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
MAAPAVQKRDGSGTYTFSSRPHAIQQRKKYRDPYEKENQAQSMYGNIMYD
RRIVRGNTYAQHILPVSSQPDPIEIQKQQEARRRAIARKRAKQHLKSQTP
EPVDGRKHIDVQTELYLEELTDRVEEADISTQTDAFLDRPPTPLFIPAKT
GIDVATQILQGELFDFDLEVKPILEVLVGKTVEQSLLEVMEEEELANLRA
QQRRFEELRNAELVETQRLEEQERRHREEKERRMRQQMEVLKKEKETTDK
LAARAFAQSYLQDLVPSVFGTLHDHGYFYDPVERDVETQFMPWLMESVTV
ELNKARVARAVLDSIIRDTVTNRFEVYNKLDEEAEQKIRAVIAAATQAMQ
PITPLPDKESGESEEVTKDEGSAGDDKPQQPESESTNQEDTGAEEPTPPD
SPPKQDGGDTAE Run BLAST on NCBI transcript from alignment at sc0000449:180826..185464- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023274 ID=TCONS_00023274|Name=TCONS_00023274|organism=Clytia hemisphaerica|type=transcript|length=4639bp|location=Sequence derived from alignment at sc0000449:180826..185464- (Clytia hemisphaerica)
AAATTGGTACCCATAAAGAAGCCATTGCAGTGTTAAAAATTAACGTCCAA
CTGCGCCACATCATCAAAAGTTTTGGAGGGAAAGTAGATCTAGCACTCGT
GATGCATTTTCACCACTATTGAGTAGTGCCGGCATTAGGGTACCACTTTC
AAAAAACTCTGATCAAAGATTTTGCTTGGCCTGGATTGAGAAACTTGGTC
TAGGTTATATTAAGGTCAGTGGTTGAGTCCCACAAAAGATGCTATATTAT
GTATATTATTCTAATCTCTTTTTAGGGTAGATACATGGTAGGTATATAAA
AACAATTAAGTTAGGTTTTTTATTAGTAACAGTTTTTCAAAATGGCAGCA
CCAGCTGTCCAGAAGCGTGATGGAAGTGGTACGTACACATTTTCCAGTAG
GCCACATGCAATCCAACAACGAAAGAAATATAGGGACCCATATGAAAAGT
AAGTCAACTTATTTCAGTTTTCCCTCGTTTTTCTTATTTGCAGATTTTTC
TAGTACTATTTCTGCCTATTTTTGCTAAAACTGTTTTCCAGTGATTTATG
AAAAATAGAAAATGCTGATTTTATTAAAAAGTGCTTATTTCTGTGAATGA
CATCACATCACAAACCTTTATTATTTGTAAATATCTAACACTTTCAGGGG
CCAAATCTTTGAAAATGTAAATCCAATTCAAGGTCTCGATCACTTGAATG
CTAGTTTCTTTTTACTAATGAAAATATCAATACAATGAGATTTAGCAGGA
AATTTTGACCAACAAAGTATCATCATAAAAAAGTTCCGTGCTAAAACACA
AGAATCTTGGATATGATTGACATCAAAACATTTTTTAAAATTAGTCTTCT
ACTCTTTTATTATCATGGTATATCGGGTATTTGACTGATTGATTGATTGT
CACAACAATCATCCTTAAAAAAGTAGGACCCATTATTACTGTAATTTTAA
ATTGAGTTAAAGATTAAAGGGTGTTTAAAAAAATGAAATTGATAAAATAA
TATCTAAATGAATTATATCCATTTTTTTTTTCAGGGAAAACCAAGCACAG
TCTATGTATGGTAATATTATGTATGATAGGAGAATTGTAAGAGGAAATAC
TTATGCCCAACATATTTTGCCAGTGGTAAGTTTTCATGGTTTCTTTTTCT
CCAATATAAATTTTTAACCTTTGAAAAGTGATCATATTAGATTAATTCAT
GTTTTCAGAAAACAAATTCATAGAAGACTGTCAAAAAAAGCTTTCATTTT
ACGTTATGTAATGGCATAAGTATAATACACATGTTTACTGTGTTGTACGC
ATCCTAGAATTATACAAAATACATCATACACAATTCTTTTCCAGAGCTCA
CAACCTGACCCTATTGAAATCCAGAAACAACAGGAAGCTCGTAGGAGGGC
AATAGCCCGAAAGAGAGCTAAGCAACATCTAAAATCACAAACACCAGAGC
CGGTAGATGGTAGGAAACATATTGATGTACAGACTGAATTATACTTAGAA
GAATTAACTGATCGTGTTGAAGAGGCAGATATTTCAACTCAAACAGATGC
CTTCCTGGATCGACCACCGACACCTTTGTTTATTCCAGCTAAGACTGGTA
TTGATGTTGCTACTCAAATCCTACAAGGAGAAGTAAGCCAATTATATTCA
TCTCATAATTTATACAGACTGTGGCAAATTTTTATATTATTATCAATCTT
GCTGTCAACTTCCAATTAATCTAATGATGATTAACTGGATCATCAAGTTT
CAAACTAAGCATTGTGCCTTAAATTGCTCTTGACTTTCAAAAATCGTTGT
TAAGTTACAGATCATGTGGATATTTTAAATGGATAAAGCCCAGTAATCTA
GAACTTTTAAGGCAGTCTTTCAATTGTTTTCACGGGATCCAGCTGGCTTG
GCTGTTCGTGGATTGAATGGAATATTGGAAGGAGTGGGGATTCGAACCAT
GAACCCCTGGTTTGAGACGCTGACGCCTTCAACCACTTAGTCATCGCTCC
TTTCAATCAATTCCTTGAATTTTTAAAGTCTTCAAAGAGCAGTTCTTCAA
TTTTTCTGATTATATCCTTTTTACCTTTATAGCTTTTCGACTTTGACCTT
GAAGTTAAACCCATATTGGAGGTACTTGTTGGTAAAACAGTTGAACAATC
TCTTCTGGAAGTCATGGAAGAGGAAGAACTAGCCAATCTACGTGCACAAC
AACGTAGATTCGAAGAATTGCGTAATGCTGAGCTGGTTGAAACTCAACGT
CTTGAAGAACAAGAGAGGAGACACCGTGAAGAAAAAGAACGTAGAATGAG
ACAACAAATGGAAGTCTTGAAAAAAGAAAAAGAAACTACAGATAAATTGG
CTGCCAGAGCTTTTGCACAGGTACATAAAATGTTAAAACTTTTGAGTTTA
AATATTTTGTTGTCTCAGGAGACAACATCTTTTGCGATGTCTTCGATGTT
GAAACGTTCCCAATTATTTTGAGAACAAACTTCACCACTAAATTTTCATA
TAAGCGTTGTCACACTTACTAAACTTCATTTTGACTGATTCTCAATCCTA
TTGTAACTGACAAAGGCAAACAGTCAGTGTTTGTGACACTTACTTTTACT
CCCATTATGCCGTACCTAGCCTGATATGAAGTCAGAACCTGTTGTAACTG
GCAAAAGTAAACGGCAAGGGTTAACAACATAAAACATATTAACATGTGTG
TTTTTATTGTTTTTCAGAGTTACTTACAAGACTTGGTACCATCAGTCTTT
GGTACATTACACGATCATGGATACTTCTATGACCCAGTGGAAAGAGGTAT
TTAAAAATTCATTATTAGTCCATTTTATTCACCAACATACTTTGGAGTAG
TAGTATTATTCTCAAAAGTTCTTTTTTTATCATTTAGCAAGCTTCACGGT
GCCAAAATTTTGAAATTCTTCTTAATCTTTTGTTCTTGATGAAAATTTAA
AAGTCCAATCGCGTACTTGTGTAATCATTTTTGCTACCCTGTGGAAACCA
CTCAATCTAAAGGCCGGTCTCTACTTTTGCGCGACTGCGATCGCATCTTT
TGGCTTCAATCCTTTTTGCTTGAAAAAAGGTTACGTCATAAAAATGTAGC
GTGCGCTTGAAATGAAACCGTTACGTCAGATCGCGCCAATGGAACGGTTT
CATTTTTCTTTTGGCCAATAGCATGGAAGATTTGATCAAAAAAGTGCGAT
CACAGTGTGCACAAATGGAGATCGGCTTTAAAACTCTTTCCACTTGGTTT
CCACATGTAGAAAAAAAGTGCACTTTACTTGAATCTCTAAAACACGAGTA
TCCTTTTATTTAATATATAATGGCTTTTGTTTGTTTACAGATGTTGAAAC
ACAATTCATGCCATGGTTAATGGAATCTGTGACAGTTGAACTGAACAAAG
CTCGTGTGGCACGTGCTGTACTTGACAGTAAGTTATTTTATGAAATTTTA
TATAACTTCACAAACTGAAAATTGTAATGATCTTCCCAATAGGCCGAAAT
ACTTAAATGCTTAAATCCCCTAAAACAAGTCTGAATACAAACAGCAAAAT
GAATGATTCCTCCTTAGACAAATGAATATTTTTTATTTTCTTCTAATTTT
AAAATAAAGGGGGAAAGGGTCCGAAGGGGCTTTAAAATTTGAAGAGTTAT
CAAGAATATAATAAGGAAACTGATAAAAAATACAACTCAACATCATTGTC
TTTTGTCATAAAACCTCTTTTTATTGTTCATGTTCAAATTATTTTTCAAT
AAAATTATTACTTTGTGTTTTGCTCAGGTATCATTCGTGACACTGTTACT
AATCGTTTTGAAGTTTACAATAAACTTGACGAAGAAGCTGAACAAAAAAT
TCGTGCTGTCATTGCGGCTGCAACACAAGCAATGCAGCCAATAACGCCCT
TACCTGACAAGGAAAGCGGTGAATCTGAAGAGGTCACCAAAGATGAAGGA
AGTGCTGGAGATGATAAACCACAACAACCAGAATCAGAATCTACTAACCA
AGAAGATACTGGAGCTGAAGAACCTACACCGCCAGATTCACCACCAAAAC
AAGATGGTGGTGATACTGCTGAATAAATATCCTAAATCCTACTTCTTGTA
TATACCCTAATTTTTCTCTTCCTCTCAATAAATCATTTTTTATATATCTT
TTAAATTATTTTTTCTTTTTCTAAAATGGTCCTGTTTGACTTTATTGCTA
AAAATGAGTGTTTATATTGATGATAATGCCTGATTTTAGCTGGTGACAAA
GCTTTGACAAAAAATTCAAAATTCACTTTGCAGGTAGGAGCAGGTATTTT
TTTATATTTTATTTATCATTATACCTATAGTAATATATTTTGGCCATGTT
TTAAAAACTGTTCTTGGAAATTTTTCTGGAAATGACCTTTTGAAATTTAG
AAGCATATTTTGAACAAATTTTGGTTGTTCTTTGTGAATCCTAAATGATT
CTCGACTCCAAGGTCGAGAAATTTAAAGTTTGGTATTATGGTTTTGTGAA
TGACAAATAATATTATTATAATGGAGAGGAAAAAAATTTATTCAGTTGTA
AATAACTCAATGATTATTATAATACTAAAATTAGTATTTGCTGGTTCGAT
TTTCTTTTCTAAAACTCATCACCACGCGTAATTCAGAAA Coding sequence (CDS) from alignment at sc0000449:180826..185464- >TCONS_00023274 ID=TCONS_00023274|Name=TCONS_00023274|organism=Clytia hemisphaerica|type=CDS|length=8673bp|location=Sequence derived from alignment at sc0000449:180826..185464- (Clytia hemisphaerica)
GTATCATTCGTGACACTGTTACTAATCGTTTTGAAGTTTACAATAAACTT
GACGAAGAAGCTGAACAAAAAATTCGTGCTGTCATTGCGGCTGCAACACA
AGCAATGCAGCCAATAACGCCCTTACCTGACAAGGAAAGCGGTGAATCTG
AAGAGGTCACCAAAGATGAAGGAAGTGCTGGAGATGATAAACCACAACAA
CCAGAATCAGAATCTACTAACCAAGAAGATACTGGAGCTGAAGAACCTAC
ACCGCCAGATTCACCACCAAAACAAGATGGTGGTGATACTGCTGAATAAA
TGTTGAAACACAATTCATGCCATGGTTAATGGAATCTGTGACAGTTGAAC
TGAACAAAGCTCGTGTGGCACGTGCTGTACTTGACAAGTTACTTACAAGA
CTTGGTACCATCAGTCTTTGGTACATTACACGATCATGGATACTTCTATG
ACCCAGTGGAAAGAGCTTTTCGACTTTGACCTTGAAGTTAAACCCATATT
GGAGGTACTTGTTGGTAAAACAGTTGAACAATCTCTTCTGGAAGTCATGG
AAGAGGAAGAACTAGCCAATCTACGTGCACAACAACGTAGATTCGAAGAA
TTGCGTAATGCTGAGCTGGTTGAAACTCAACGTCTTGAAGAACAAGAGAG
GAGACACCGTGAAGAAAAAGAACGTAGAATGAGACAACAAATGGAAGTCT
TGAAAAAAGAAAAAGAAACTACAGATAAATTGGCTGCCAGAGCTTTTGCA
CAGAGCTCACAACCTGACCCTATTGAAATCCAGAAACAACAGGAAGCTCG
TAGGAGGGCAATAGCCCGAAAGAGAGCTAAGCAACATCTAAAATCACAAA
CACCAGAGCCGGTAGATGGTAGGAAACATATTGATGTACAGACTGAATTA
TACTTAGAAGAATTAACTGATCGTGTTGAAGAGGCAGATATTTCAACTCA
AACAGATGCCTTCCTGGATCGACCACCGACACCTTTGTTTATTCCAGCTA
AGACTGGTATTGATGTTGCTACTCAAATCCTACAAGGAGAAGGAAAACCA
AGCACAGTCTATGTATGGTAATATTATGTATGATAGGAGAATTGTAAGAG
GAAATACTTATGCCCAACATATTTTGCCAGTGATGGCAGCACCAGCTGTC
CAGAAGCGTGATGGAAGTGGTACGTACACATTTTCCAGTAGGCCACATGC
AATCCAACAACGAAAGAAATATAGGGACCCATATGAAAAGTATCATTCGT
GACACTGTTACTAATCGTTTTGAAGTTTACAATAAACTTGACGAAGAAGC
TGAACAAAAAATTCGTGCTGTCATTGCGGCTGCAACACAAGCAATGCAGC
CAATAACGCCCTTACCTGACAAGGAAAGCGGTGAATCTGAAGAGGTCACC
AAAGATGAAGGAAGTGCTGGAGATGATAAACCACAACAACCAGAATCAGA
ATCTACTAACCAAGAAGATACTGGAGCTGAAGAACCTACACCGCCAGATT
CACCACCAAAACAAGATGGTGGTGATACTGCTGAATAAATGTTGAAACAC
AATTCATGCCATGGTTAATGGAATCTGTGACAGTTGAACTGAACAAAGCT
CGTGTGGCACGTGCTGTACTTGACAAGTTACTTACAAGACTTGGTACCAT
CAGTCTTTGGTACATTACACGATCATGGATACTTCTATGACCCAGTGGAA
AGAGCTTTTCGACTTTGACCTTGAAGTTAAACCCATATTGGAGGTACTTG
TTGGTAAAACAGTTGAACAATCTCTTCTGGAAGTCATGGAAGAGGAAGAA
CTAGCCAATCTACGTGCACAACAACGTAGATTCGAAGAATTGCGTAATGC
TGAGCTGGTTGAAACTCAACGTCTTGAAGAACAAGAGAGGAGACACCGTG
AAGAAAAAGAACGTAGAATGAGACAACAAATGGAAGTCTTGAAAAAAGAA
AAAGAAACTACAGATAAATTGGCTGCCAGAGCTTTTGCACAGAGCTCACA
ACCTGACCCTATTGAAATCCAGAAACAACAGGAAGCTCGTAGGAGGGCAA
TAGCCCGAAAGAGAGCTAAGCAACATCTAAAATCACAAACACCAGAGCCG
GTAGATGGTAGGAAACATATTGATGTACAGACTGAATTATACTTAGAAGA
ATTAACTGATCGTGTTGAAGAGGCAGATATTTCAACTCAAACAGATGCCT
TCCTGGATCGACCACCGACACCTTTGTTTATTCCAGCTAAGACTGGTATT
GATGTTGCTACTCAAATCCTACAAGGAGAAGGAAAACCAAGCACAGTCTA
TGTATGGTAATATTATGTATGATAGGAGAATTGTAAGAGGAAATACTTAT
GCCCAACATATTTTGCCAGTGATGGCAGCACCAGCTGTCCAGAAGCGTGA
TGGAAGTGGTACGTACACATTTTCCAGTAGGCCACATGCAATCCAACAAC
GAAAGAAATATAGGGACCCATATGAAAAGTATCATTCGTGACACTGTTAC
TAATCGTTTTGAAGTTTACAATAAACTTGACGAAGAAGCTGAACAAAAAA
TTCGTGCTGTCATTGCGGCTGCAACACAAGCAATGCAGCCAATAACGCCC
TTACCTGACAAGGAAAGCGGTGAATCTGAAGAGGTCACCAAAGATGAAGG
AAGTGCTGGAGATGATAAACCACAACAACCAGAATCAGAATCTACTAACC
AAGAAGATACTGGAGCTGAAGAACCTACACCGCCAGATTCACCACCAAAA
CAAGATGGTGGTGATACTGCTGAATAAATGTTGAAACACAATTCATGCCA
TGGTTAATGGAATCTGTGACAGTTGAACTGAACAAAGCTCGTGTGGCACG
TGCTGTACTTGACAAGTTACTTACAAGACTTGGTACCATCAGTCTTTGGT
ACATTACACGATCATGGATACTTCTATGACCCAGTGGAAAGAGCTTTTCG
ACTTTGACCTTGAAGTTAAACCCATATTGGAGGTACTTGTTGGTAAAACA
GTTGAACAATCTCTTCTGGAAGTCATGGAAGAGGAAGAACTAGCCAATCT
ACGTGCACAACAACGTAGATTCGAAGAATTGCGTAATGCTGAGCTGGTTG
AAACTCAACGTCTTGAAGAACAAGAGAGGAGACACCGTGAAGAAAAAGAA
CGTAGAATGAGACAACAAATGGAAGTCTTGAAAAAAGAAAAAGAAACTAC
AGATAAATTGGCTGCCAGAGCTTTTGCACAGAGCTCACAACCTGACCCTA
TTGAAATCCAGAAACAACAGGAAGCTCGTAGGAGGGCAATAGCCCGAAAG
AGAGCTAAGCAACATCTAAAATCACAAACACCAGAGCCGGTAGATGGTAG
GAAACATATTGATGTACAGACTGAATTATACTTAGAAGAATTAACTGATC
GTGTTGAAGAGGCAGATATTTCAACTCAAACAGATGCCTTCCTGGATCGA
CCACCGACACCTTTGTTTATTCCAGCTAAGACTGGTATTGATGTTGCTAC
TCAAATCCTACAAGGAGAAGGAAAACCAAGCACAGTCTATGTATGGTAAT
ATTATGTATGATAGGAGAATTGTAAGAGGAAATACTTATGCCCAACATAT
TTTGCCAGTGATGGCAGCACCAGCTGTCCAGAAGCGTGATGGAAGTGGTA
CGTACACATTTTCCAGTAGGCCACATGCAATCCAACAACGAAAGAAATAT
AGGGACCCATATGAAAAGTATCATTCGTGACACTGTTACTAATCGTTTTG
AAGTTTACAATAAACTTGACGAAGAAGCTGAACAAAAAATTCGTGCTGTC
ATTGCGGCTGCAACACAAGCAATGCAGCCAATAACGCCCTTACCTGACAA
GGAAAGCGGTGAATCTGAAGAGGTCACCAAAGATGAAGGAAGTGCTGGAG
ATGATAAACCACAACAACCAGAATCAGAATCTACTAACCAAGAAGATACT
GGAGCTGAAGAACCTACACCGCCAGATTCACCACCAAAACAAGATGGTGG
TGATACTGCTGAATAAATGTTGAAACACAATTCATGCCATGGTTAATGGA
ATCTGTGACAGTTGAACTGAACAAAGCTCGTGTGGCACGTGCTGTACTTG
ACAAGTTACTTACAAGACTTGGTACCATCAGTCTTTGGTACATTACACGA
TCATGGATACTTCTATGACCCAGTGGAAAGAGCTTTTCGACTTTGACCTT
GAAGTTAAACCCATATTGGAGGTACTTGTTGGTAAAACAGTTGAACAATC
TCTTCTGGAAGTCATGGAAGAGGAAGAACTAGCCAATCTACGTGCACAAC
AACGTAGATTCGAAGAATTGCGTAATGCTGAGCTGGTTGAAACTCAACGT
CTTGAAGAACAAGAGAGGAGACACCGTGAAGAAAAAGAACGTAGAATGAG
ACAACAAATGGAAGTCTTGAAAAAAGAAAAAGAAACTACAGATAAATTGG
CTGCCAGAGCTTTTGCACAGAGCTCACAACCTGACCCTATTGAAATCCAG
AAACAACAGGAAGCTCGTAGGAGGGCAATAGCCCGAAAGAGAGCTAAGCA
ACATCTAAAATCACAAACACCAGAGCCGGTAGATGGTAGGAAACATATTG
ATGTACAGACTGAATTATACTTAGAAGAATTAACTGATCGTGTTGAAGAG
GCAGATATTTCAACTCAAACAGATGCCTTCCTGGATCGACCACCGACACC
TTTGTTTATTCCAGCTAAGACTGGTATTGATGTTGCTACTCAAATCCTAC
AAGGAGAAGGAAAACCAAGCACAGTCTATGTATGGTAATATTATGTATGA
TAGGAGAATTGTAAGAGGAAATACTTATGCCCAACATATTTTGCCAGTGA
TGGCAGCACCAGCTGTCCAGAAGCGTGATGGAAGTGGTACGTACACATTT
TCCAGTAGGCCACATGCAATCCAACAACGAAAGAAATATAGGGACCCATA
TGAAAAGTATCATTCGTGACACTGTTACTAATCGTTTTGAAGTTTACAAT
AAACTTGACGAAGAAGCTGAACAAAAAATTCGTGCTGTCATTGCGGCTGC
AACACAAGCAATGCAGCCAATAACGCCCTTACCTGACAAGGAAAGCGGTG
AATCTGAAGAGGTCACCAAAGATGAAGGAAGTGCTGGAGATGATAAACCA
CAACAACCAGAATCAGAATCTACTAACCAAGAAGATACTGGAGCTGAAGA
ACCTACACCGCCAGATTCACCACCAAAACAAGATGGTGGTGATACTGCTG
AATAAATGTTGAAACACAATTCATGCCATGGTTAATGGAATCTGTGACAG
TTGAACTGAACAAAGCTCGTGTGGCACGTGCTGTACTTGACAAGTTACTT
ACAAGACTTGGTACCATCAGTCTTTGGTACATTACACGATCATGGATACT
TCTATGACCCAGTGGAAAGAGCTTTTCGACTTTGACCTTGAAGTTAAACC
CATATTGGAGGTACTTGTTGGTAAAACAGTTGAACAATCTCTTCTGGAAG
TCATGGAAGAGGAAGAACTAGCCAATCTACGTGCACAACAACGTAGATTC
GAAGAATTGCGTAATGCTGAGCTGGTTGAAACTCAACGTCTTGAAGAACA
AGAGAGGAGACACCGTGAAGAAAAAGAACGTAGAATGAGACAACAAATGG
AAGTCTTGAAAAAAGAAAAAGAAACTACAGATAAATTGGCTGCCAGAGCT
TTTGCACAGAGCTCACAACCTGACCCTATTGAAATCCAGAAACAACAGGA
AGCTCGTAGGAGGGCAATAGCCCGAAAGAGAGCTAAGCAACATCTAAAAT
CACAAACACCAGAGCCGGTAGATGGTAGGAAACATATTGATGTACAGACT
GAATTATACTTAGAAGAATTAACTGATCGTGTTGAAGAGGCAGATATTTC
AACTCAAACAGATGCCTTCCTGGATCGACCACCGACACCTTTGTTTATTC
CAGCTAAGACTGGTATTGATGTTGCTACTCAAATCCTACAAGGAGAAGGA
AAACCAAGCACAGTCTATGTATGGTAATATTATGTATGATAGGAGAATTG
TAAGAGGAAATACTTATGCCCAACATATTTTGCCAGTGATGGCAGCACCA
GCTGTCCAGAAGCGTGATGGAAGTGGTACGTACACATTTTCCAGTAGGCC
ACATGCAATCCAACAACGAAAGAAATATAGGGACCCATATGAAAAGTATC
ATTCGTGACACTGTTACTAATCGTTTTGAAGTTTACAATAAACTTGACGA
AGAAGCTGAACAAAAAATTCGTGCTGTCATTGCGGCTGCAACACAAGCAA
TGCAGCCAATAACGCCCTTACCTGACAAGGAAAGCGGTGAATCTGAAGAG
GTCACCAAAGATGAAGGAAGTGCTGGAGATGATAAACCACAACAACCAGA
ATCAGAATCTACTAACCAAGAAGATACTGGAGCTGAAGAACCTACACCGC
CAGATTCACCACCAAAACAAGATGGTGGTGATACTGCTGAATAAATGTTG
AAACACAATTCATGCCATGGTTAATGGAATCTGTGACAGTTGAACTGAAC
AAAGCTCGTGTGGCACGTGCTGTACTTGACAAGTTACTTACAAGACTTGG
TACCATCAGTCTTTGGTACATTACACGATCATGGATACTTCTATGACCCA
GTGGAAAGAGCTTTTCGACTTTGACCTTGAAGTTAAACCCATATTGGAGG
TACTTGTTGGTAAAACAGTTGAACAATCTCTTCTGGAAGTCATGGAAGAG
GAAGAACTAGCCAATCTACGTGCACAACAACGTAGATTCGAAGAATTGCG
TAATGCTGAGCTGGTTGAAACTCAACGTCTTGAAGAACAAGAGAGGAGAC
ACCGTGAAGAAAAAGAACGTAGAATGAGACAACAAATGGAAGTCTTGAAA
AAAGAAAAAGAAACTACAGATAAATTGGCTGCCAGAGCTTTTGCACAGAG
CTCACAACCTGACCCTATTGAAATCCAGAAACAACAGGAAGCTCGTAGGA
GGGCAATAGCCCGAAAGAGAGCTAAGCAACATCTAAAATCACAAACACCA
GAGCCGGTAGATGGTAGGAAACATATTGATGTACAGACTGAATTATACTT
AGAAGAATTAACTGATCGTGTTGAAGAGGCAGATATTTCAACTCAAACAG
ATGCCTTCCTGGATCGACCACCGACACCTTTGTTTATTCCAGCTAAGACT
GGTATTGATGTTGCTACTCAAATCCTACAAGGAGAAGGAAAACCAAGCAC
AGTCTATGTATGGTAATATTATGTATGATAGGAGAATTGTAAGAGGAAAT
ACTTATGCCCAACATATTTTGCCAGTGATGGCAGCACCAGCTGTCCAGAA
GCGTGATGGAAGTGGTACGTACACATTTTCCAGTAGGCCACATGCAATCC
AACAACGAAAGAAATATAGGGACCCATATGAAAAGTATCATTCGTGACAC
TGTTACTAATCGTTTTGAAGTTTACAATAAACTTGACGAAGAAGCTGAAC
AAAAAATTCGTGCTGTCATTGCGGCTGCAACACAAGCAATGCAGCCAATA
ACGCCCTTACCTGACAAGGAAAGCGGTGAATCTGAAGAGGTCACCAAAGA
TGAAGGAAGTGCTGGAGATGATAAACCACAACAACCAGAATCAGAATCTA
CTAACCAAGAAGATACTGGAGCTGAAGAACCTACACCGCCAGATTCACCA
CCAAAACAAGATGGTGGTGATACTGCTGAATAAATGTTGAAACACAATTC
ATGCCATGGTTAATGGAATCTGTGACAGTTGAACTGAACAAAGCTCGTGT
GGCACGTGCTGTACTTGACAAGTTACTTACAAGACTTGGTACCATCAGTC
TTTGGTACATTACACGATCATGGATACTTCTATGACCCAGTGGAAAGAGC
TTTTCGACTTTGACCTTGAAGTTAAACCCATATTGGAGGTACTTGTTGGT
AAAACAGTTGAACAATCTCTTCTGGAAGTCATGGAAGAGGAAGAACTAGC
CAATCTACGTGCACAACAACGTAGATTCGAAGAATTGCGTAATGCTGAGC
TGGTTGAAACTCAACGTCTTGAAGAACAAGAGAGGAGACACCGTGAAGAA
AAAGAACGTAGAATGAGACAACAAATGGAAGTCTTGAAAAAAGAAAAAGA
AACTACAGATAAATTGGCTGCCAGAGCTTTTGCACAGAGCTCACAACCTG
ACCCTATTGAAATCCAGAAACAACAGGAAGCTCGTAGGAGGGCAATAGCC
CGAAAGAGAGCTAAGCAACATCTAAAATCACAAACACCAGAGCCGGTAGA
TGGTAGGAAACATATTGATGTACAGACTGAATTATACTTAGAAGAATTAA
CTGATCGTGTTGAAGAGGCAGATATTTCAACTCAAACAGATGCCTTCCTG
GATCGACCACCGACACCTTTGTTTATTCCAGCTAAGACTGGTATTGATGT
TGCTACTCAAATCCTACAAGGAGAAGGAAAACCAAGCACAGTCTATGTAT
GGTAATATTATGTATGATAGGAGAATTGTAAGAGGAAATACTTATGCCCA
ACATATTTTGCCAGTGATGGCAGCACCAGCTGTCCAGAAGCGTGATGGAA
GTGGTACGTACACATTTTCCAGTAGGCCACATGCAATCCAACAACGAAAG
AAATATAGGGACCCATATGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023274-exon-sc0000449-1575043694:185017..185464 | TCONS_00023274-exon-sc0000449-1575043694:185017..185464 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1575043694:184340..184430 | TCONS_00023274-exon-sc0000449-1575043694:184340..184430 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1575043694:183833..184120 | TCONS_00023274-exon-sc0000449-1575043694:183833..184120 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1575043694:183095..183382 | TCONS_00023274-exon-sc0000449-1575043694:183095..183382 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1575043694:182669..182747 | TCONS_00023274-exon-sc0000449-1575043694:182669..182747 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1575043694:182038..182124 | TCONS_00023274-exon-sc0000449-1575043694:182038..182124 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1575043694:180826..181687 | TCONS_00023274-exon-sc0000449-1575043694:180826..181687 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1510915933:185017..185464 | TCONS_00023274-exon-sc0000449-1510915933:185017..185464 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1510915933:184340..184430 | TCONS_00023274-exon-sc0000449-1510915933:184340..184430 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1510915933:183833..184120 | TCONS_00023274-exon-sc0000449-1510915933:183833..184120 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1510915933:183095..183382 | TCONS_00023274-exon-sc0000449-1510915933:183095..183382 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1510915933:182669..182747 | TCONS_00023274-exon-sc0000449-1510915933:182669..182747 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1510915933:182038..182124 | TCONS_00023274-exon-sc0000449-1510915933:182038..182124 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1510915933:180826..181687 | TCONS_00023274-exon-sc0000449-1510915933:180826..181687 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1491911889:185017..185464 | TCONS_00023274-exon-sc0000449-1491911889:185017..185464 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1491911889:184340..184430 | TCONS_00023274-exon-sc0000449-1491911889:184340..184430 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1491911889:183833..184120 | TCONS_00023274-exon-sc0000449-1491911889:183833..184120 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1491911889:183095..183382 | TCONS_00023274-exon-sc0000449-1491911889:183095..183382 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1491911889:182669..182747 | TCONS_00023274-exon-sc0000449-1491911889:182669..182747 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1491911889:182038..182124 | TCONS_00023274-exon-sc0000449-1491911889:182038..182124 | Clytia hemisphaerica | exon |
| TCONS_00023274-exon-sc0000449-1491911889:180826..181687 | TCONS_00023274-exon-sc0000449-1491911889:180826..181687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000449 | supercontig | sc0000449:180826..185464 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009290 | Radial_spoke_3 |
Blast
BLAST of TCONS_00023274 vs. Swiss-Prot (Human)
Match: RSPH3 (Radial spoke head protein 3 homolog OS=Homo sapiens GN=RSPH3 PE=1 SV=1) HSP 1 Score: 320.087 bits (819), Expect = 2.918e-99 Identity = 209/315 (66.35%), Postives = 255/315 (80.95%), Query Frame = 3
Query: 381 TYTFSSRPHAI-QQRKKYRDPYEKENQAQSMYGNIMYDRRIVRGNTYAQHILPVSSQPDPXXXXXXXXXXXXXXXXXXXXXHLKSQTPEPVDGRKHIDVQTELYLEELTDRVEEADISTQTDAFLDRPPTPLFIPAKTGIDVATQILQGELFDFDLEVKPILEVLVGKTVXXXXXXXXXXXXXXXXRAQQRRFEELRNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKKEKETTDKLAARAFAQSYLQDLVPSVFGTLHDHGYFYDPVERDVETQFMPWLMESVTVELNKARVARAVLDSIIRDTVTNRFEVY 1322
TYT++SRP A+ QR +YRD + ++ YGNIMYDRR++RGNTYA P+ +PD +E+Q+Q+EAR+RA+ARK+A++ L+ QTPEPV+GRKH+DVQTELYLEE+ DR+ E D+ QTDAFLDRPPTPLFIPAKTG DVATQIL+GELFDFDLEVKP+LEVLVGKT+EQSLLEVMEEEELANLRA QR +EELRN+E E QRLEEQERRHREEKERR +QQ E++ K ET+ K+AARAFAQ YL DL+PSVFG+L D GYFYDP+ERD+E F+PWLM V + + V R VLD +IR+ V R +Y
Sbjct: 157 TYTYTSRPRALPCQRSRYRDSLTQPDEEPMHYGNIMYDRRVIRGNTYALQTGPLLGRPDSLELQRQREARKRALARKQAQEQLRPQTPEPVEGRKHVDVQTELYLEEIADRIIEVDMECQTDAFLDRPPTPLFIPAKTGKDVATQILEGELFDFDLEVKPVLEVLVGKTIEQSLLEVMEEEELANLRASQREYEELRNSERAEVQRLEEQERRHREEKERRKKQQWEIMHKHNETSQKIAARAFAQRYLADLLPSVFGSLRDSGYFYDPIERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMY 471
The following BLAST results are available for this feature:
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