TCONS_00023286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023286
Unique NameTCONS_00023286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023286 ID=TCONS_00023286|Name=TCONS_00023286|organism=Clytia hemisphaerica|type=transcript|length=793bp
GATGATGtttaaaaacactgcaaaaattaagtttcatTTTAGGTCTGTGA
CATATGTTATATGTGTatttgttttcaagaaaattgacaagctaacgaaa
tgaaaaagtttaattaagatttgattgatactaaaccttttcaacattat
aataaattttcaataattaatgGCAACCTGTTAAATATGAGACTACTTAA
TTGAAATCAATTTCGGCAATTTCTATCTTTGGAGTCTTTCCTTGTACGca
actaaattttaaatcaactaACAATGATAATTTCAACCATGCAAATACGT
ACATAAAAAGGAAAGGGGTCAGCGGTGGGTCtaaattattgaaattcaaa
acatatatttaatgatgagaaaaaatttattaggataacattttcaaata
aatccatttcgaaattaacattatataaacTAATTGAAAACCAATATAAT
GCGTTCAGCATCCTTTAATAAGTCTGTTCCTTTGTTTCTAAATGTATTTT
ATGTTTGCCACAAAGATGGTGTTTTATTCTAATTATCTTGTAATACTgta
acattttcacaaaatttaagattggcttttgaatgtccagttcctctttt
ttagagaaaaagttATGTTATTACTCACTTAATGTAACAATCGCATTTTA
GTTTAGGTTACGACTCTAGATTGTTTTATGAATGCCAGAAAATATTGGGT
CAAGAAGACGAGAGTGACATGTATATGCTGTCAAGTTTTTAGAAGCTTGT
CACTGTAGGTTTGCAGCTTCTTAATACACTTTCAACAGTAGTT
Run BLAST on NCBI

transcript from alignment at sc0000449:251807..252599

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023286 ID=TCONS_00023286|Name=TCONS_00023286|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at sc0000449:251807..252599 (Clytia hemisphaerica)
AACTACTGTTGAAAGTGTATTAAGAAGCTGCAAACCTACAGTGACAAGCT
TCTAAAAACTTGACAGCATATACATGTCACTCTCGTCTTCTTGACCCAAT
ATTTTCTGGCATTCATAAAACAATCTAGAGTCGTAACCTAAACTAAAATG
CGATTGTTACATTAAGTGAGTAATAACATaactttttctctaaaaaagag
gaactggacattcaaaagccaatcttaaattttgtgaaaatgttacAGTA
TTACAAGATAATTAGAATAAAACACCATCTTTGTGGCAAACATAAAATAC
ATTTAGAAACAAAGGAACAGACTTATTAAAGGATGCTGAACGCATTATAT
TGGTTTTCAATTAgtttatataatgttaatttcgaaatggatttatttga
aaatgttatcctaataaattttttctcatcattaaatatatgttttgaat
ttcaataatttaGACCCACCGCTGACCCCTTTCCTTTTTATGTACGTATT
TGCATGGTTGAAATTATCATTGTtagttgatttaaaatttagttgCGTAC
AAGGAAAGACTCCAAAGATAGAAATTGCCGAAATTGATTTCAATTAAGTA
GTCTCATATTTAACAGGTTGCcattaattattgaaaatttattataatgt
tgaaaaggtttagtatcaatcaaatcttaattaaactttttcatttcgtt
agcttgtcaattttcttgaaaacaaatACACATATAACATATGTCACAGA
CCTAAAatgaaacttaatttttgcagtgtttttaaaCATCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013096XLOC_013096Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023286-exon-sc0000449-1491911889:251807..252599TCONS_00023286-exon-sc0000449-1491911889:251807..252599Clytia hemisphaericaexon
TCONS_00023286-exon-sc0000449-1510915933:251807..252599TCONS_00023286-exon-sc0000449-1510915933:251807..252599Clytia hemisphaericaexon
TCONS_00023286-exon-sc0000449-1575043694:251807..252599TCONS_00023286-exon-sc0000449-1575043694:251807..252599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000449supercontigsc0000449:251807..252599 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0781031	0.0731192	0.0511925	0.507281	0	0.387145	1.47166	0.419585	0	0	0	0	0.129156	0.299817	0.176208	0.12181	0	0	0.456569	0.886877	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top