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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023290 ID=TCONS_00023290|Name=TCONS_00023290|organism=Clytia hemisphaerica|type=transcript|length=2086bpRun BLAST on NCBI protein sequence of TCONS_00023290-protein >TCONS_00023290-protein ID=TCONS_00023290-protein|Name=TCONS_00023290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp SVGYTILVVVGLNRLCQKFPQFKNTFYFTFGMAVVLFTSKTISYNRVWKTRun BLAST on NCBI transcript from alignment at sc0000450:33410..47899+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023290 ID=TCONS_00023290|Name=TCONS_00023290|organism=Clytia hemisphaerica|type=transcript|length=14490bp|location=Sequence derived from alignment at sc0000450:33410..47899+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000450:33410..47899+ >TCONS_00023290 ID=TCONS_00023290|Name=TCONS_00023290|organism=Clytia hemisphaerica|type=CDS|length=23730bp|location=Sequence derived from alignment at sc0000450:33410..47899+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023290 vs. Swiss-Prot (Human)
Match: TMTC1 (Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens GN=TMTC1 PE=1 SV=3) HSP 1 Score: 230.72 bits (587), Expect = 2.389e-64 Identity = 140/424 (33.02%), Postives = 236/424 (55.66%), Query Frame = 3
Query: 3 SVGYTILVVVGLNRLCQKFPQ-FKNTFYFTFGMAVVLFTSKTISYNRVWKTRETLFRAGVHTLPHNAKAHYNYANFLKDENRTEQAVYHYKKAVELYPPHSSSHNNLGTLLQNDQPGVAEYHFNEAIKHTPGHYRAMFNIAHIYRSRGEYEKACDILKTCLSLKPTYFDAKLLLADSLNELGRAAESIKLYQMLHKEHQDNYQVNHNFAAILQKQGYQKEAINIYSNLLTKDPKNENILNKLATVYKKAGNNEMAVTLYQRAI-LAHPKSSKAYQNLALLYYERREFQKSRDLYEKLMQISPNAEHKR-NYAIVLFALREHREAIRLVDGNIQEQPSDMQSHHLLINFLVDTQEYQKGKVAIERALKISPGDQRVL--LF--KANILRNTKSYAEAIKIYRHLIHKNGRNMDALINLGTIYHIQ 1253
S+GY IL V GL++LC + T + + ++LF+ KT+ N +W +RE+LFR+GV TLPHNAK HYNYANFLKD+ R ++A+YHY+ A++LYP H+S+ NNLGTL ++ A+ ++ A++ P H RA+FN+ ++ +S+ + E+A +LK + P + DA LA L E R E+ ++YQ K D+ +++N+ L G ++A+ Y + P + + L +Y+ G N MA Y+RA+ +AH ++ L LYY ++++ +Y++ + P+ R A VL + + +EA ++ + + E+ ++ + LL + + K AI++AL++ P D +V+ LF K N LR +A + YR + N A +N+G I HI+
Sbjct: 417 SMGYCILFVHGLSKLCTWLNRCGATTLIVSTVLLLLLFSWKTVKQNEIWLSRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDT--AEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAH--KAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIK 836 The following BLAST results are available for this feature:
BLAST of TCONS_00023290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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