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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023292 ID=TCONS_00023292|Name=TCONS_00023292|organism=Clytia hemisphaerica|type=transcript|length=1627bpRun BLAST on NCBI transcript from alignment at sc0000450:33414..43288+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023292 ID=TCONS_00023292|Name=TCONS_00023292|organism=Clytia hemisphaerica|type=transcript|length=9875bp|location=Sequence derived from alignment at sc0000450:33414..43288+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023292 vs. Swiss-Prot (Human)
Match: TMTC1 (Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens GN=TMTC1 PE=1 SV=3) HSP 1 Score: 178.333 bits (451), Expect = 1.524e-47 Identity = 127/456 (27.85%), Postives = 228/456 (50.00%), Query Frame = 2
Query: 2 VGYTILVVVGLNRLCQKFPQF-KNTFYFTFGMAVVLFTSKTISYNRVWKTRETLFR--------------------------------------LYPPHSSSHNNLGTLLQNDQPGVAEYHFNEAIKHTPGHYRAMFNIAHIYRSRGEYEKACDILKTCLSLKPTYFDAKLLLADSLNELGRAAESIKLYQMLHKEHQDNYQVNHNFAAILQKQGYQKEAINIYSNLLTKDPKNENILNKLATVYKKAGNNEMAVTLYQRAI-LAHPKSSKAYQNLALLYYERREFQKSRDLYEKLMQISPNAEHKR-NYAIVLFALREHREAIRLVDGNIQEQPSDMQSHHLLINFLVDTQEYQKGKVAIERALKISPGDQRVL--LF--KANILRNTKSYAEAIKIYRHLIHKNGRNMDALINLGTIYHIQGEYESAMLQYQDALRIEPSNQIVRDNISKLERL 1234
+GY IL V GL++LC + T + + ++LF+ KT+ N +W +RE+LFR LYP H+S+ NNLGTL ++ A+ ++ A++ P H RA+FN+ ++ +S+ + E+A +LK + P + DA LA L E R E+ ++YQ K D+ +++N+ L G ++A+ Y + P + + L +Y+ G N MA Y+RA+ +AH ++ L LYY ++++ +Y++ + P+ R A VL + + +EA ++ + + E+ ++ + LL + + K AI++AL++ P D +V+ LF K N LR +A + YR + N A +N+G I HI+G+Y SA Y+ AL++ P ++++++N++KL+RL
Sbjct: 418 MGYCILFVHGLSKLCTWLNRCGATTLIVSTVLLLLLFSWKTVKQNEIWLSRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDT--AEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAH--KAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRL 869 HSP 2 Score: 83.9593 bits (206), Expect = 7.676e-17 Identity = 79/312 (25.32%), Postives = 148/312 (47.44%), Query Frame = 2
Query: 335 KACDILKTCLSLKPTYFDAKLLLADSL-----NELGRAAESIKLYQMLHKEHQDNYQVNHNFAAILQKQGYQKEAINIYSNLLTKDPKNENILNKLATVYKKAGNNEMAVTLYQRAILAHPKSSKAYQNLALLYYERREFQKSRDLYEKLMQISPN-AEHKRNYAIVLFALREHREAIRLVDGNIQEQPSDMQSHHLLINFLVDTQEYQKGKVAIERALKISPGDQRVLLFKANILRNTKSYAEAIKIYRHLIHKNGRNMDALINLGTIYHIQGEYESAMLQYQDALRIEPSNQIVRDNISKLERLINKSRK 1252
K C L C + LLL S NE+ + ES L++ + N +V++N+A L+ QG KEAI Y L P++ + LN L T+ + +M YQRA+ HP+ ++A NL L + + +++ L + ++ P A+ + A +L +EA + I+ P H+ FLVDT +K ++A+K+SP ++ + R+ + A + Y+ + + + L LG +Y+ G YE A+ YQ+A ++PS + +R ++++ ++ ++++
Sbjct: 430 KLCTWLNRCGATTLIVSTVLLLLLFSWKTVKQNEIWLSRES--LFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDTAEAKM---YYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRAL-QVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKE 735 The following BLAST results are available for this feature:
BLAST of TCONS_00023292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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