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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023294 ID=TCONS_00023294|Name=TCONS_00023294|organism=Clytia hemisphaerica|type=transcript|length=1790bp
cgctattaggtacccaagagtaacagtttgattgacattgcctggaatat
gagatttttttttttaattgagaatCTGAAGTTTACACTtggattaaatt
ttgtgaatcAGCCACATTATCACctaatttcctttgttttcctAGAGGCT
TTgagaaaatttcagattttttggaggaccaaattttgggaaaagggcca
aaatttgcaaaaatagcAAATATTGATCCACAAGAAATTCAATCCACTAG
AGATATGTGTGGAGGATGTTGGCTGAAACATCCAAGACTGAATGAGCATT
TTCTTCAGactgaaaatggttatttcttgTATTTCAGGTGTTACATCAGT
CGGAAAAATTTGAGTGCAGCTTGTGCTAATTTGGCAAAACAATATAACTT
TGTTGTCCAATTTAAGCCTTTTATTTTGGATCCCAATGTACCACCAGGAG
GGATACCATGGCACGATCAAGTGGCAATGAAACAAGGAGAAAAAGCTGCC
AAACAGGAAATGAAAGGAAATGGCCCAATTTCAAGAGCTGGAAAAAGCAT
TGGCATAAAGTTTGATCCAGAGAGGTATGTGGTTCATTCATTGAAAAGTC
ATTTATTATTACAATTTGCACGTGAATACCAGGGTCCACAGAAAGAGACC
GAACTTTACTATTTGATATGTCAACAATATTTTGAAGAAGCTTTGAATAT
CAACAGTGATAAAGTATTGCAAAGTCTTGCAGCTCAAGTTGGTCTCAACC
CAGAACACGCATTGAATTACTTTACAAGTGAAGATAACATTAAAAAACTT
TATGGTGAAATTCAGAAAACTAAGAAAAGAGGGTTGTTGGGAATCCCACT
TTTCCAGATTTCCATAGTTGGCTTCAATGATGCAAAACCATTGCAAATTG
GAGGTCAAGATAAATCTGGATTCACCGAAATCTTCAACAAAATGCTTAGA
GACTAcaataaacaaatgaaatctaAGAAATGAATAGATTTCAAGAATCG
CACTTTTGCACGGTCGAAATTTTTATTAATATATTACttatgaaattgat
ttttaaacaaatttatgcatctcattttgaattttagtagggtaaatatt
ttttaacgtTAGAGCAATTATTCATAACATGAAGAGGGCTCGATTTGCAT
GATAACAGGGTGCCCCGTTGCCATGGCACCTCACATGGCNGGGCTCGATT
TGCATGATAACAGGGTGCCCCATTGCCATGGCACCTCACATGGCCAAGAa
attctattttgaaattttcaagttctTTTTCAATTAATTACTTTCATATT
GATTCGGAATGGTTCTTAAAAAGTGACATTTCTAGCTACTCAAAAAGCTC
AGTGACTATCTCTGCTGCAAACGGAAATTAATTTTTAGAATAGGCTCTCC
ACTGCATACGTCAAGGGCCCTTTGTAAACCTTTGAATCACTTCGATAAAT
CTACCCAATTGGGCCTGCACATCCCAGGCTACTCAAGtgtttaaattatt
ttagtcaGGTTTACTCTCTGGGGCAAATATTTCGCACTACTGTTGTAGCC
ATTAATGAAAAGTCTTGCAATCTTACAAAAGTATTATTTCAATTAGATAT
TTTCTTTGCCAATTACGAGAAAGCTTCTCATTTTTAACTATTGTACTCAT
CCgtggaataaatatttttttgtttgtacatttttgttttaaagtttatt
tAGGGAACCTAGCACAATatcaaaaaatactttcaaGGAATGTTACGTAA
CTTTATGCACTGTTGTCAGGTCAATCGGGTGAAACTTTCA Run BLAST on NCBI protein sequence of TCONS_00023294-protein >TCONS_00023294-protein ID=TCONS_00023294-protein|Name=TCONS_00023294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MCGGCWLKHPRLNEHFLQTENGYFLYFRCYISRKNLSAACANLAKQYNFV
VQFKPFILDPNVPPGGIPWHDQVAMKQGEKAAKQEMKGNGPISRAGKSIG
IKFDPERYVVHSLKSHLLLQFAREYQGPQKETELYYLICQQYFEEALNIN
SDKVLQSLAAQVGLNPEHALNYFTSEDNIKKLYGEIQKTKKRGLLGIPLF
QISIVGFNDAKPLQIGGQDKSGFTEIFNKMLRDYNKQMKSKK Run BLAST on NCBI transcript from alignment at sc0000450:123712..126622+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023294 ID=TCONS_00023294|Name=TCONS_00023294|organism=Clytia hemisphaerica|type=transcript|length=2911bp|location=Sequence derived from alignment at sc0000450:123712..126622+ (Clytia hemisphaerica)
cgctattaggtacccaagagtaacagtttgattgacattgcctggaatat
gagatttttttttttaattgagaatCTGAAGTTTACACTtggattaaatt
ttgtgaatcAGCCACATTATCACctaatttcctttgttttcctAGAGGCT
TTgagaaaatttcagattttttggaggaccaaattttgggaaaagggcca
aaatttgcaaaaatagcAAATATTGATCCACAAGAAATTCAATCCACTAG
AGATATGTGTGGAGGATGTTGGCTGAAACATCCAAGACTGAATGAGCATT
TTCTTCAGactgaaaatggttatttcttgTATTTCAGGTGTTACATCAGT
CGGAAAAATTTGAGTGCAGCTTGTGCTAATTTGGCAAAACAATATAACTT
TGTTGTCCAATTTAAGCCTTTTATTTTGGATCCCAATGTACCACCAGGAG
GGATACCATGGCACGATCAAGTGGCAATGAAACAAGGAGAAAAAGCTGCC
AAACAGGAAATGAAAGGAAATGGCCCAATTTCAAGAGCTGGAAAAAGCAT
TGTGAGTGACCAAAAACTTCTCTGACTTCTTAGCTTTAAACAAAAACTCC
CTTTTTCAGCTCTTTACTTGAgttttgaatacttaaatttGCACTCGTTT
TAGATACTTGAAAGTGGTTtttatagaacaatagaaaGCAGGGAGGAGTa
cagaggcagggtactaacccatagggtactaacttgattttatactaaaa
aaatttttagtaCCATccacccatatttagtaccgggtactacttcattt
ttgcagtaaaaaataggaacaccacccctaaaatcttaaattttacagat
tagaccaagagaggggtactattgttagtttttcagactgaaaattgaca
gataattcaagcaaactatcaatgatgcaggctgcatcatttgaggcGTG
CGATAGCACGCGcgcgcacacctccacacacacctaaaatgtcTGAGGAG
TGCGATCAATCACACCCCTTAAAGTAAGTTTCACAACTGAAAGTTGtgca
tagcactccttatcacacgcctaaattactaaaattaaggttttaggagt
gtgattgaccacacgcctgaaattttcaaatgatgcagcctgatGATGGA
GTCAGAgaagcttttgtcctttgattttcatcacacactttttgaccatt
ttggaagttttgtctgtcaaaaaaatcaaaaaatttctcaaaagagtaaa
aaaaattgttgattaaaaaaatttcaaatcaaaaaaattaatatttgaaa
aaagtcaaaatattacaacaaactactttttttattgaaaaacagcaaaa
ttctgtgaaaaagtacccaTACTATACTAGATCCTGTACTTGCTTGAAGA
GTGAACAATACACACCCCCACCCCCaaagtagtaccgggtactaactttt
ttgaaatgcaaaaatagacaccaccacctggctatgggtcagtaccctgt
gtctgtacccccccccctgtagaAAGTGACCAAAACCAAATAGTAACGCC
TTTACTAGAAATTAATTGAAACGAATTAAACGAATTTTTAGAGGGGTTGC
GAATGCCCTGGAGTGCCCAAATTAAAGGACATAATCTGCTATAGAaagga
aacatttttttattatttctagGGCATAAAGTTTGATCCAGAGAGGTATG
TGGTTCATTCATTGAAAAGTCATTTATTATTACAATTTGCACGTGAATAC
CAGGGTCCACAGAAAGAGACCGAACTTTACTATTTGATATGTCAACAATA
TTTTGAAGAAGCTTTGAATATCAACAGTGATAAAGTATTGCAAAGTCTTG
CAGCTCAAGTTGGTCTCAACCCAGAACACGCATTGAATTACTTTACAAGT
GAAGATAACATTAAAAAACTTTATGGTGAAATTCAGAAAACTAAGAAAAG
AGGGTTGTTGGGAATCCCACTTTTCCAGATTTCCATAGTTGGCTTCAATG
ATGCAAAACCATTGCAAATTGGAGGTCAAGATAAATCTGGATTCACCGAA
ATCTTCAACAAAATGCTTAGAGACTAcaataaacaaatgaaatctaAGAA
ATGAATAGATTTCAAGAATCGCACTTTTGCACGGTCGAAATTTTTATTAA
TATATTACttatgaaattgatttttaaacaaatttatgcatctcattttg
aattttagtagggtaaatattttttaacgtTAGAGCAATTATTCATAACA
TGAAGAGGGCTCGATTTGCATGATAACAGGGTGCCCCGTTGCCATGGCAC
CTCACATGGCNGGGCTCGATTTGCATGATAACAGGGTGCCCCATTGCCAT
GGCACCTCACATGGCCAAGAaattctattttgaaattttcaagttctTTT
TCAATTAATTACTTTCATATTGATTCGGAATGGTTCTTAAAAAGTGACAT
TTCTAGCTACTCAAAAAGCTCAGTGACTATCTCTGCTGCAAACGGAAATT
AATTTTTAGAATAGGCTCTCCACTGCATACGTCAAGGGCCCTTTGTAAAC
CTTTGAATCACTTCGATAAATCTACCCAATTGGGCCTGCACATCCCAGGC
TACTCAAGtgtttaaattattttagtcaGGTTTACTCTCTGGGGCAAATA
TTTCGCACTACTGTTGTAGCCATTAATGAAAAGTCTTGCAATCTTACAAA
AGTATTATTTCAATTAGATATTTTCTTTGCCAATTACGAGAAAGCTTCTC
ATTTTTAACTATTGTACTCATCCgtggaataaatatttttttgtttgtac
atttttgttttaaagtttatttAGGGAACCTAGCACAATatcaaaaaata
ctttcaaGGAATGTTACGTAACTTTATGCACTGTTGTCAGGTCAATCGGG
TGAAACTTTCA Coding sequence (CDS) from alignment at sc0000450:123712..126622+ >TCONS_00023294 ID=TCONS_00023294|Name=TCONS_00023294|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0000450:123712..126622+ (Clytia hemisphaerica)
ATGTGTGGAGGATGTTGGCTGAAACATCCAAGACTGAATGAGCATTTTCT
TCAGactgaaaatggttatttcttgTATTTCAGGTGTTACATCAGTCGGA
AAAATTTGAGTGCAGCTTGTGCTAATTTGGCAAAACAATATAACTTTGTT
GTCCAATTTAAGCCTTTTATTTTGGATCCCAATGTACCACCAGGAGGGAT
ACCATGGCACGATCAAGTGGCAATGAAACAAGGAGAAAAAGCTGCCAAAC
AGGAAATGAAAGGAAATGGCCCAATTTCAAGAGCTGGAAAAAGCATTGGC
ATAAAGTTTGATCCAGAGAGGTATGTGGTTCATTCATTGAAAAGTCATTT
ATTATTACAATTTGCACGTGAATACCAGGGTCCACAGAAAGAGACCGAAC
TTTACTATTTGATATGTCAACAATATTTTGAAGAAGCTTTGAATATCAAC
AGTGATAAAGTATTGCAAAGTCTTGCAGCTCAAGTTGGTCTCAACCCAGA
ACACGCATTGAATTACTTTACAAGTGAAGATAACATTAAAAAACTTTATG
GTGAAATTCAGAAAACTAAGAAAAGAGGGTTGTTGGGAATCCCACTTTTC
CAGATTTCCATAGTTGGCTTCAATGATGCAAAACCATTGCAAATTGGAGG
TCAAGATAAATCTGGATTCACCGAAATCTTCAACAAAATGCTTAGAGACT
AcaataaacaaatgaaatctaAGAAATGAATGTGTGGAGGATGTTGGCTG
AAACATCCAAGACTGAATGAGCATTTTCTTCAGactgaaaatggttattt
cttgTATTTCAGGTGTTACATCAGTCGGAAAAATTTGAGTGCAGCTTGTG
CTAATTTGGCAAAACAATATAACTTTGTTGTCCAATTTAAGCCTTTTATT
TTGGATCCCAATGTACCACCAGGAGGGATACCATGGCACGATCAAGTGGC
AATGAAACAAGGAGAAAAAGCTGCCAAACAGGAAATGAAAGGAAATGGCC
CAATTTCAAGAGCTGGAAAAAGCATTGGCATAAAGTTTGATCCAGAGAGG
TATGTGGTTCATTCATTGAAAAGTCATTTATTATTACAATTTGCACGTGA
ATACCAGGGTCCACAGAAAGAGACCGAACTTTACTATTTGATATGTCAAC
AATATTTTGAAGAAGCTTTGAATATCAACAGTGATAAAGTATTGCAAAGT
CTTGCAGCTCAAGTTGGTCTCAACCCAGAACACGCATTGAATTACTTTAC
AAGTGAAGATAACATTAAAAAACTTTATGGTGAAATTCAGAAAACTAAGA
AAAGAGGGTTGTTGGGAATCCCACTTTTCCAGATTTCCATAGTTGGCTTC
AATGATGCAAAACCATTGCAAATTGGAGGTCAAGATAAATCTGGATTCAC
CGAAATCTTCAACAAAATGCTTAGAGACTAcaataaacaaatgaaatcta
AGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023294-exon-sc0000450-1491911889:123712..124262 | TCONS_00023294-exon-sc0000450-1491911889:123712..124262 | Clytia hemisphaerica | exon |
| TCONS_00023294-exon-sc0000450-1510915933:123712..124262 | TCONS_00023294-exon-sc0000450-1510915933:123712..124262 | Clytia hemisphaerica | exon |
| TCONS_00023294-exon-sc0000450-1575043694:123712..124262 | TCONS_00023294-exon-sc0000450-1575043694:123712..124262 | Clytia hemisphaerica | exon |
| TCONS_00023294-exon-sc0000450-1491911889:125384..126622 | TCONS_00023294-exon-sc0000450-1491911889:125384..126622 | Clytia hemisphaerica | exon |
| TCONS_00023294-exon-sc0000450-1510915933:125384..126622 | TCONS_00023294-exon-sc0000450-1510915933:125384..126622 | Clytia hemisphaerica | exon |
| TCONS_00023294-exon-sc0000450-1575043694:125384..126622 | TCONS_00023294-exon-sc0000450-1575043694:125384..126622 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000450 | supercontig | sc0000450:123712..126622 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001853 | DSBA-like_thioredoxin_dom |
| IPR012336 | Thioredoxin-like_fold |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0015035 | protein disulfide oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0015035 |
protein disulfide oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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