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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023298 ID=TCONS_00023298|Name=TCONS_00023298|organism=Clytia hemisphaerica|type=transcript|length=1585bp
ATAATGGAAATATTAATGTAATAATTCTGATGGTGTTACTCAAAGAAGAA
GTTAATTacttcaatcattttttttgcTCCAGGAAAGCAATGGATACGTC
AAATGATAGTCAGTGCATCATTCATCCCTGGTCTTGTATGTGGATCAACC
TTCCTTATCAATTTCGTTGCCATGTATTACAAAGCTTCTCGCGCCATTCC
CTTTGGTACTATGGTTGCCATAGCAgctatttgtttgtttgtcatcTTAC
CTTTGACACTGGTGGGTACCGTTCTTGGTCGCAACATCATGGGTCAACCG
AACAACCCATGCCGCGTCAACCCAGTAGCTCGTCCCATTCCAGAAAAGAA
ATGGTTTATGGAGCCAAGTGTGATTATTTTCTTGGGTGGTATTCTACCTT
TTGGTTCCATCTTCATTGAGATGTATTTCATTTTCACATCGTTCTGGGCG
TACAAAATTTATTATGTGTATGGATTTATGTTGTTGGTGTTTTTGATCCT
GGCTACTGTGACCGTTTGTGTAACCATTGTCTGCTCATATTTCCTTCTCA
ATGCTGAAGACTACAGATGgCAATGGACGAGTTTCTTATCAGCTGCATCC
ACCGCTATTTATGTTTATATGTATTCCTTCTATTATTTCTTCTTCAAAAC
TAAAATGTTTGGTTTCTTTCAAACGGTCTTTTACTTCGGTTACATGGCTT
TGTTTAGTGCAGCTCTGGGTATCATGTGTGGAACCTTTGGTTATATTGGA
ACCAGTTTATTCGTATGGAAAATCTACTCCACTGTGAAAATCGATTAAGA
CCTTGATGACTTAAATGCAAGTAATcgaaagaaaaactaaattcaACAAT
GAACGTTTAGTGCTTTTTCAATGACATTCAATATATGAACGCTCTTTGAG
ATGGTGTGGATATGTTCATGAAAAGCCGCCCGTCATCGCCCTTCACATGG
CGACCAAGCACAAACGAAATCAGTTAGATATTACACCATTATACTCCAAT
ACCACTCCAAAGAATAACAATCGATATTTTTTTACGTTTACTCTATCAGA
TGAATTCTTTCTtttaatgttatattttttatttgatcattttATTTATA
ATATTATCGCAGTGAGTGTTTTTATTATTCGGATAAATTCTgcgtttttc
tgtttttgtttcttcataaCAAGGCTATGTAGCTTTTTCACTCGACTATC
GGAAAGTGTAGAGATCGTAGTCCACGTCATCAGACTGCTCAaggtttttt
gaatgaaaaaaatgtcagattttggacaaaaaaattGCCAAAGTTATTCT
CCCCGCGATATCAAAATTATACTGTATTTGTTTAGTTAGTATTTTTTGAG
GTTGGTTGGGGATGATTTAAGTTATTTTTAGGcccctgaaatatttttta
ggtGTTCATTTTTTGTAAACGTACAGTACAGTAATGATAAAATTATcagt
catttttctttttgttcgggaaaatatttttactgaTATTTTCAACAAGA
TTTATTTTTTGTCTGTTGATTTTTATTCCTGTTCGACGGTTGCGataaca
atttttgaatttctttacttttttcgtAATTCGag Run BLAST on NCBI protein sequence of TCONS_00023298-protein >TCONS_00023298-protein ID=TCONS_00023298-protein|Name=TCONS_00023298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MIVSASFIPGLVCGSTFLINFVAMYYKASRAIPFGTMVAIAAICLFVILP
LTLVGTVLGRNIMGQPNNPCRVNPVARPIPEKKWFMEPSVIIFLGGILPF
GSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILATVTVCVTIVCSYFLLN
AEDYRWQWTSFLSAASTAIYVYMYSFYYFFFKTKMFGFFQTVFYFGYMAL
FSAALGIMCGTFGYIGTSLFVWKIYSTVKID Run BLAST on NCBI transcript from alignment at sc0000450:50186..52808- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023298 ID=TCONS_00023298|Name=TCONS_00023298|organism=Clytia hemisphaerica|type=transcript|length=2623bp|location=Sequence derived from alignment at sc0000450:50186..52808- (Clytia hemisphaerica)
ATAATGGAAATATTAATGTAATAATTCTGATGGTGTTACTCAAAGAAGAA
GTTAATTACTTCAATCATTTTTTTTGCTCCAGGAAAGCAATGGATACGTC
AAATGATAGTCAGTGCATCATTCATCCCTGGTCTTGTATGTGGATCAACC
TTCCTTATCAATTTCGTTGCCATGTATTACAAAGCTTCTCGCGCCATTCC
CTTTGGTACTATGGTTGCCATAGCAGCTATTTGTTTGTTTGTCATCTTAC
CTTTGACACTGGTGGGTACCGTTCTTGGTCGCAACATCATGGGTCAACCG
AACAACCCATGCCGCGTCAACCCAGTAGCTCGTCCCATTCCAGAAAAGAA
ATGGTTTATGGAGCCAAGTGTGATTATTTTCTTGGGTGGTATTCTACCTT
TTGGTTCCATCTTCATTGAGATGTATTTCATTTTCACATCGTTCTGGGCG
TACAAAATTTATTATGTGTATGGATTTATGTTGTTGGTGTTTTTGATCCT
GGCTACTGTGACCGTTTGTGTAACCATTGTCTGCTCATATTTCCTTCTCA
ATGCTGAAGACTACAGATGGTAAGCTGTTTTTTTTTTTTTGACAATGTTA
TTTTAGATTCGCAAACCTTTAAAATGTACAATAAATACTCTTTTCTCGAG
ATGCATAAATTTATTGTTGTCCTCGTTTTCAAGCATAAAATTACATATTC
ACAATGATAATTGTGTTGTTTACACCTCATGAGACATTTTGAATTTCAAG
TACTTTTGTTTTAGAGTTAATGTTTGCCTTTTGGGAATTTAAATTTGTTT
AAATGTATAATTTCATAGCAATGAAATCTGTTTGAAAACGAAGATAACAA
TAAATTTATGCATCTCGAGAAGAGTGTATTGGTTTTTATGCTGTGGAAAG
CTGTTTCATCCCATAAGAATTAACTACTGTACCTTAAAATAAACTTTCTC
AATAATAACAATTTATTTTCATTTTATTTCAGGCAATGGACGAGTTTCTT
ATCAGCTGCATCCACCGCTATTTATGTTTATATGTATTCCTTCTATTATT
TCTTCTTCAAAACTAAGTAAGTTCATCGTTTCTTGATTACCGTATTACTT
CGAATAAACGCCAATTTGTCGGTTTATAGGAGGAGCGTTTATTCGAGGAG
GGGGGGGGACGTTTATTCGAATTAAAACGGTAATATTCATATTTTGCATT
TAAGTGTTAAACGTAAACTAATAGCTATTGAATTCAGAGTAGTAGCAGCT
CCACAATAAAATACCCTCTTAATTTGGGCTGAGTTCAAAAATGGTAATAT
TTATCTTTTTACATACTTCTCTTGATCATTTCAGAATGTTTGGTTTCTTT
CAAACGGTCTTTTACTTCGGTTACATGGCTTTGTTTAGTGCAGCTCTGGG
TATCATGTGTGGTAAGTTTCTCGTTGATTTGTTTCACTGGTGTACTGCTT
ATAGGGATGCCAAAGCTGCTCTTATCATTTCGCTGCCATCGAGGCAAATA
TAAGAGAATGATCTATCTGTAAGAGAAAAGAGAAAAGGAAAACCTGTTTT
CTAAGACACTGATTTTGAGATAAGACGGTTTGCCACGTTGGCATCGATTT
ATTTATTTAGTTATTGTTCTGAGTAAATTTCCTAGCTTGCTTCTCCTTTG
GTAGGGTATCTGTTTTTTCAGGTAATTAATTTCAATCATATTCGATTCTC
TTTAAAAGTGAAATGCCTTGCAATGCTCAAAAGGATCATTAATAATCAAA
ACTGTTGTCATGTTTTAGGAACCTTTGGTTATATTGGAACCAGTTTATTC
GTATGGAAAATCTACTCCACTGTGAAAATCGATTAAGACCTTGATGACTT
AAATGCAAGTAATCGAAAGAAAAACTAAATTCAACAATGAACGTTTAGTG
CTTTTTCAATGACATTCAATATATGAACGCTCTTTGAGATGGTGTGGATA
TGTTCATGAAAAGCCGCCCGTCATCGCCCTTCACATGGCGACCAAGCACA
AACGAAATCAGTTAGATATTACACCATTATACTCCAATACCACTCCAAAG
AATAACAATCGATATTTTTTTACGTTTACTCTATCAGATGAATTCTTTCT
TTTAATGTTATATTTTTTATTTGATCATTTTATTTATAATATTATCGCAG
TGAGTGTTTTTATTATTCGGATAAATTCTGCGTTTTTCTGTTTTTGTTTC
TTCATAACAAGGCTATGTAGCTTTTTCACTCGACTATCGGAAAGTGTAGA
GATCGTAGTCCACGTCATCAGACTGCTCAAGGTTTTTTGAATGAAAAAAA
TGTCAGATTTTGGACAAAAAAATTGCCAAAGTTATTCTCCCCGCGATATC
AAAATTATACTGTATTTGTTTAGTTAGTATTTTTTGAGGTTGGTTGGGGA
TGATTTAAGTTATTTTTAGGCCCCTGAAATATTTTTTAGGTGTTCATTTT
TTGTAAACGTACAGTACAGTAATGATAAAATTATCAGTCATTTTTCTTTT
TGTTCGGGAAAATATTTTTACTGATATTTTCAACAAGATTTATTTTTTGT
CTGTTGATTTTTATTCCTGTTCGACGGTTGCGATAACAATTTTTGAATTT
CTTTACTTTTTTCGTAATTCGAG Coding sequence (CDS) from alignment at sc0000450:50186..52808- >TCONS_00023298 ID=TCONS_00023298|Name=TCONS_00023298|organism=Clytia hemisphaerica|type=CDS|length=2784bp|location=Sequence derived from alignment at sc0000450:50186..52808- (Clytia hemisphaerica)
GAACCTTTGGTTATATTGGAACCAGTTTATTCGTATGGAAAATCTACTCC
ACTGTGAAAATCGATTAAAATGTTTGGTTTCTTTCAAACGGTCTTTTACT
TCGGTTACATGGCTTTGTTTAGTGCAGCTCTGGGTATCATGTGTGGCAAT
GGACGAGTTTCTTATCAGCTGCATCCACCGCTATTTATGTTTATATGTAT
TCCTTCTATTATTTCTTCTTCAAAACTAAATGATAGTCAGTGCATCATTC
ATCCCTGGTCTTGTATGTGGATCAACCTTCCTTATCAATTTCGTTGCCAT
GTATTACAAAGCTTCTCGCGCCATTCCCTTTGGTACTATGGTTGCCATAG
CAGCTATTTGTTTGTTTGTCATCTTACCTTTGACACTGGTGGGTACCGTT
CTTGGTCGCAACATCATGGGTCAACCGAACAACCCATGCCGCGTCAACCC
AGTAGCTCGTCCCATTCCAGAAAAGAAATGGTTTATGGAGCCAAGTGTGA
TTATTTTCTTGGGTGGTATTCTACCTTTTGGTTCCATCTTCATTGAGATG
TATTTCATTTTCACATCGTTCTGGGCGTACAAAATTTATTATGTGTATGG
ATTTATGTTGTTGGTGTTTTTGATCCTGGCTACTGTGACCGTTTGTGTAA
CCATTGTCTGCTCATATTTCCTTCTCAATGCTGAAGACTACAGATGGAAC
CTTTGGTTATATTGGAACCAGTTTATTCGTATGGAAAATCTACTCCACTG
TGAAAATCGATTAAAATGTTTGGTTTCTTTCAAACGGTCTTTTACTTCGG
TTACATGGCTTTGTTTAGTGCAGCTCTGGGTATCATGTGTGGCAATGGAC
GAGTTTCTTATCAGCTGCATCCACCGCTATTTATGTTTATATGTATTCCT
TCTATTATTTCTTCTTCAAAACTAAATGATAGTCAGTGCATCATTCATCC
CTGGTCTTGTATGTGGATCAACCTTCCTTATCAATTTCGTTGCCATGTAT
TACAAAGCTTCTCGCGCCATTCCCTTTGGTACTATGGTTGCCATAGCAGC
TATTTGTTTGTTTGTCATCTTACCTTTGACACTGGTGGGTACCGTTCTTG
GTCGCAACATCATGGGTCAACCGAACAACCCATGCCGCGTCAACCCAGTA
GCTCGTCCCATTCCAGAAAAGAAATGGTTTATGGAGCCAAGTGTGATTAT
TTTCTTGGGTGGTATTCTACCTTTTGGTTCCATCTTCATTGAGATGTATT
TCATTTTCACATCGTTCTGGGCGTACAAAATTTATTATGTGTATGGATTT
ATGTTGTTGGTGTTTTTGATCCTGGCTACTGTGACCGTTTGTGTAACCAT
TGTCTGCTCATATTTCCTTCTCAATGCTGAAGACTACAGATGGAACCTTT
GGTTATATTGGAACCAGTTTATTCGTATGGAAAATCTACTCCACTGTGAA
AATCGATTAAAATGTTTGGTTTCTTTCAAACGGTCTTTTACTTCGGTTAC
ATGGCTTTGTTTAGTGCAGCTCTGGGTATCATGTGTGGCAATGGACGAGT
TTCTTATCAGCTGCATCCACCGCTATTTATGTTTATATGTATTCCTTCTA
TTATTTCTTCTTCAAAACTAAATGATAGTCAGTGCATCATTCATCCCTGG
TCTTGTATGTGGATCAACCTTCCTTATCAATTTCGTTGCCATGTATTACA
AAGCTTCTCGCGCCATTCCCTTTGGTACTATGGTTGCCATAGCAGCTATT
TGTTTGTTTGTCATCTTACCTTTGACACTGGTGGGTACCGTTCTTGGTCG
CAACATCATGGGTCAACCGAACAACCCATGCCGCGTCAACCCAGTAGCTC
GTCCCATTCCAGAAAAGAAATGGTTTATGGAGCCAAGTGTGATTATTTTC
TTGGGTGGTATTCTACCTTTTGGTTCCATCTTCATTGAGATGTATTTCAT
TTTCACATCGTTCTGGGCGTACAAAATTTATTATGTGTATGGATTTATGT
TGTTGGTGTTTTTGATCCTGGCTACTGTGACCGTTTGTGTAACCATTGTC
TGCTCATATTTCCTTCTCAATGCTGAAGACTACAGATGGAACCTTTGGTT
ATATTGGAACCAGTTTATTCGTATGGAAAATCTACTCCACTGTGAAAATC
GATTAAAATGTTTGGTTTCTTTCAAACGGTCTTTTACTTCGGTTACATGG
CTTTGTTTAGTGCAGCTCTGGGTATCATGTGTGGCAATGGACGAGTTTCT
TATCAGCTGCATCCACCGCTATTTATGTTTATATGTATTCCTTCTATTAT
TTCTTCTTCAAAACTAAATGATAGTCAGTGCATCATTCATCCCTGGTCTT
GTATGTGGATCAACCTTCCTTATCAATTTCGTTGCCATGTATTACAAAGC
TTCTCGCGCCATTCCCTTTGGTACTATGGTTGCCATAGCAGCTATTTGTT
TGTTTGTCATCTTACCTTTGACACTGGTGGGTACCGTTCTTGGTCGCAAC
ATCATGGGTCAACCGAACAACCCATGCCGCGTCAACCCAGTAGCTCGTCC
CATTCCAGAAAAGAAATGGTTTATGGAGCCAAGTGTGATTATTTTCTTGG
GTGGTATTCTACCTTTTGGTTCCATCTTCATTGAGATGTATTTCATTTTC
ACATCGTTCTGGGCGTACAAAATTTATTATGTGTATGGATTTATGTTGTT
GGTGTTTTTGATCCTGGCTACTGTGACCGTTTGTGTAACCATTGTCTGCT
CATATTTCCTTCTCAATGCTGAAGACTACAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023298-exon-sc0000450-1575043694:52240..52808 | TCONS_00023298-exon-sc0000450-1575043694:52240..52808 | Clytia hemisphaerica | exon |
| TCONS_00023298-exon-sc0000450-1575043694:51743..51826 | TCONS_00023298-exon-sc0000450-1575043694:51743..51826 | Clytia hemisphaerica | exon |
| TCONS_00023298-exon-sc0000450-1575043694:51398..51474 | TCONS_00023298-exon-sc0000450-1575043694:51398..51474 | Clytia hemisphaerica | exon |
| TCONS_00023298-exon-sc0000450-1575043694:50186..51040 | TCONS_00023298-exon-sc0000450-1575043694:50186..51040 | Clytia hemisphaerica | exon |
| TCONS_00023298-exon-sc0000450-1510915933:52240..52808 | TCONS_00023298-exon-sc0000450-1510915933:52240..52808 | Clytia hemisphaerica | exon |
| TCONS_00023298-exon-sc0000450-1510915933:51743..51826 | TCONS_00023298-exon-sc0000450-1510915933:51743..51826 | Clytia hemisphaerica | exon |
| TCONS_00023298-exon-sc0000450-1510915933:51398..51474 | TCONS_00023298-exon-sc0000450-1510915933:51398..51474 | Clytia hemisphaerica | exon |
| TCONS_00023298-exon-sc0000450-1510915933:50186..51040 | TCONS_00023298-exon-sc0000450-1510915933:50186..51040 | Clytia hemisphaerica | exon |
| TCONS_00023298-exon-sc0000450-1491911889:52240..52808 | TCONS_00023298-exon-sc0000450-1491911889:52240..52808 | Clytia hemisphaerica | exon |
| TCONS_00023298-exon-sc0000450-1491911889:51743..51826 | TCONS_00023298-exon-sc0000450-1491911889:51743..51826 | Clytia hemisphaerica | exon |
| TCONS_00023298-exon-sc0000450-1491911889:51398..51474 | TCONS_00023298-exon-sc0000450-1491911889:51398..51474 | Clytia hemisphaerica | exon |
| TCONS_00023298-exon-sc0000450-1491911889:50186..51040 | TCONS_00023298-exon-sc0000450-1491911889:50186..51040 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000450 | supercontig | sc0000450:50186..52808 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004240 | EMP70 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00023298 vs. Swiss-Prot (Human)
Match: TM9S3 (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2) HSP 1 Score: 354.755 bits (909), Expect = 2.267e-114 Identity = 189/238 (79.41%), Postives = 210/238 (88.24%), Query Frame = 1
Query: 82 GKQWIRQMIVSASFIPGLVCGSTFLINFVAMYYKASRAIPFGTMVAIAAICLFVILPLTLVGTVLGRNIMGQPNNPCRVNPVARPIPEKKWFMEPSVIIFLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILATVTVCVTIVCSYFLLNAEDYRWQWTSFLSAASTAIXXXXXXXXXXXXXXXXXXXXQTVFYFGYMALFSAALGIMCGTFGYIGTSLFVWKIYSTVKID 795
G++WI+QM + A IP +VCG+ F INF+A+YY ASRAIPFGTMVA+ IC FVILPL LVGT+LGRN+ GQPN PCRVN V RPIPEKKWFMEP+VI+ LGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFM+LV +IL VTVCVTIVC+YFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYY+FFKTKM+G FQT FYFGYMA+FS ALGIMCG GY+GTS FV KIY+ VKID
Sbjct: 352 GRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589
The following BLAST results are available for this feature:
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