TCONS_00023299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023299
Unique NameTCONS_00023299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023299 ID=TCONS_00023299|Name=TCONS_00023299|organism=Clytia hemisphaerica|type=transcript|length=628bp
caggaATTGTTGGTGAAAAGAATGAAGACGATGTATTATATATGTGGACA
CACAAGAAATTCGAAATAGGGTACAATGGTGACCAAATTGTAGAAATCAA
TTTGACGAGTGAAAATAAAGTGAAGGTCGAGGAAGGTGGTGATCTTCCAT
TTACTTATCAAGTCACTTGGAAACAATCACAAATGACTTACGAAAAACGT
TATGAAAAATACTTGGACCCAGGCTTTTTCCAGCACAGGATTCATTGGTT
TTCCATCTTCAATTCCTTCATGATGGTCATCTTTTTGGTTGGTTTGGTCA
GTATGATCTTGATGAGAACTTTACGAAAAGATTACGCAAGATACAGCAAA
GAAGATGACCTAGATGATATGGAACGTGATTTGGGAGATGAATATGGTTG
GAAGCAAGTTCACGGAGATGTCTTTCGAATGCCATCCTACCCCACAATCC
TTTGCTCTTTAATTGGAAGCGGATATCATTTAGCGGCTGTCACCATGTGT
GTCATTGGTTTTGTTATCATGGGAGATTTATACATGGGGTAAGTATCAGT
TAATATTACAGACTATCATTCTAAAGTTGGAAGTAAACATTATAATAGAT
GAACCAAAATAAACAAGTTGCAAAATGA
Run BLAST on NCBI

protein sequence of TCONS_00023299-protein

>TCONS_00023299-protein ID=TCONS_00023299-protein|Name=TCONS_00023299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
GIVGEKNEDDVLYMWTHKKFEIGYNGDQIVEINLTSENKVKVEEGGDLPF
TYQVTWKQSQMTYEKRYEKYLDPGFFQHRIHWFSIFNSFMMVIFLVGLVS
MILMRTLRKDYARYSKEDDLDDMERDLGDEYGWKQVHGDVFRMPSYPTIL
CSLIGSGYHLAAVTMCVIGFVIMGDLYMG
Run BLAST on NCBI

transcript from alignment at sc0000450:57026..60061-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023299 ID=TCONS_00023299|Name=TCONS_00023299|organism=Clytia hemisphaerica|type=transcript|length=3036bp|location=Sequence derived from alignment at sc0000450:57026..60061- (Clytia hemisphaerica)
CAGGAATTGTTGGTGAAAAGAATGAAGACGATGTATTATATATGTGGACA
CACAAGAAATTCGAAATAGGGTACAATGGTGACCAAGTAAGATATTAATT
ATGCTGCAACTAAATTTTTCTGTTGTAAATCTTAAAGGACAGTGTCTGGC
TATTGTTATATTGTGCTAAATAAACAAAGAAAAGTTTTGTCTTTCCTCGT
TCTGACCAATCTTGCTCCACACCACAACACACTCCACAACACAAAAGATT
TATTTTTTGCTATTTTTGATAACTTAAGATCATTGAAATAGATAACTTTT
ATGTACAAACAGTATGAAGTAAGCATTGAATACTAATGTATCAACTACTA
ACTACTAAATCAACTACTAAAGTCTGCGGCTGGGTCAGAAAATTTTTTTT
CACCTGGTCGGTTTCCGGAAACACTACATTTTTTTATTTTTGCGTAAGGC
TGAGAATATAGCCTGGAGGCCACTTAAACCCTCCCAAATTGAAAAATCTG
ATGAAGCAAAGTGGAAATACTGCAACTGCAATCCTCGCTTCAACCTTTAA
ATTTTGAAAAACGTTAAAATTCCCAAAATTGCCAACATATTTCGGTGCTG
ATTGTAGAAGGAGTAATAGTTTATAGTTCATTGAATAGCTTAGGCGTTAG
AGTCTCTTCTTTCTCCGCTGCTCGGACCTACCTGAATGATAGAAAGGTTC
CCAGTAGTAAAACTTCAAATTAATTCGCTGGAGGACAGAATCAAGTAAAG
CAGGGCCAAATCTGGAGGTTCTAGAATCACTCGTTGACCAAAAATGGTCA
AAAACGATCAAAATCTTAAAAAAGTGTATTTTCGTCAAATGTTTGCATTT
TTTCACTTGAACTTTGACCATGAAGCCCAATCCAATTCCTATGTGTTAGA
CCAAAAATGACGATTTATAACTCAAACTGGCATTACAGGAGGGCTTCTCA
CTTCAAGGGTTATAATACAAAAATTGTGAAAATTTAAACTGAATTGATTA
AAAAGAATTCAGTATCCAAATACTTTTTACTTATATCAAGAAAAATAATT
GACCCTTTCATGGTGCCTTCATAATAAATACTGTTTTATTAATTTTTACA
GATTGTAGAAATCAATTTGACGAGTGAAAATAAAGTGAAGGTCGAGGAAG
GTGGTGATCTTCCATTTACTTATCAAGTAAGTATTTCAAATCAAGAATGG
TACCTGTTTTTTGACTACACTCTTCTCGAAATGCATAAAATAATTACGAG
CCTCGTTTTCAAAGTAATGTTGTCAAGATACTTCAACGCTATCAGACATA
ATTAATGTTTACGCTTGTTTGAAGTTTCATATCAAAATTGGAAGCGTTTT
TTAGAAAGGATATCTTCTGTCTTATACCTTGATAAATCCTTCACTCTCAC
CTTAATTAGAAAAGTTTTATCAATTTCATTTGCTTTACAGGTCACTTGGA
AACAATCACAAATGACTTACGAAAAACGTTATGAAAAATACTTGGACCCA
GGCTTTTTCCAGCACAGGGTACGTAGAGACGGATTGTTTTAAACCCATTG
GGATGTTATTGATATTTTGGCCATATAGTGTACAGAGGGATCTAAACCCC
CCTATATGTGTATCCCCCTTTTAAAAAAAATTTCGATCCCACAGTATTTA
CATCAGCAGTCCACTAGTCATTCAAAACCAAAAACATTTGTATTAATAAA
AGTTATATGAAAAAAAACAGTTTATGGCGCTGCAGGCAAAAATTTAGCTA
TTTACACTTGTTTTTTAGTTGTCCCACACCAAATATCTAAATCAATATAA
ATACGATAGATATCTTGACGAAAAGTTGTTATCCCCTCTATTTTTACTTG
ACCCCCCCCCCCAAAATCTTAAACTCGTATTTTCTTCGGAAAATCTCCTA
TCCCCCCTATAAAGCATTTTTGGAAAAGTTGAATCCCCAAATATATAGTA
AACCTTTCTGGGCGATTGGTTGGGCGATTCTCTACTTAGAATGATAGGAT
TTTAAAATATAAATTTCTTGCTAAAAATCTGTTATTGTTTTTTAAATCAT
TTGCAGATTCATTGGTTTTCCATCTTCAATTCCTTCATGATGGTCATCTT
TTTGGTTGGTTTGGTCAGTATGATCTTGATGAGAACTTTACGAAAAGATT
ACGCAAGATACAGCAAAGAAGATGACCTAGATGATATGGTATGTTCGTAT
GATCAATTTCCGCAAAATTTGTTATCATTAAGCTTTACTAGCGGATGTTT
TCGTGTTCATATTCACAATATGCGCCATTAACGAGTTTATTTATTCGAGA
TAAACGGAGGGGGACGGTATAAAGCAAAGTTGACATGTCTCCAAAATCAC
CGTCCACTTTGCTCGACGACGGTAAAAACACTAAGATACCGTCTATCTGC
AAAGGCGATATATAGCCGTACATCAACTATCGACTTTGTTTTTTATCATT
TCTCTTACCGTCGCCCTCGATATCCTCCGATACATAAACTCGGTATTGCA
ATGTCTTTCACGGACCCAACAGTTGGTTAATTGTAAGTGACGTATTGACT
GATTTTACGTCACTCGCAACCAATCAGCTGTTGGGTCCGTGATGTTGATG
TAATGTCAGAAGACATTGCAATGGCGCATATCATGAATACTCAACAAGCT
AGCTCCAAAAGCAGACGATTAGATAGATTTTATTGGTAATGAATAATAGT
ATTTGGTTCGTTTTGGTTTATCAAAGTTCTTCACTTCATGAATAGATGGG
AAATGTAATCGATTTCTTTTTCATTGAAGGAACGTGATTTGGGAGATGAA
TATGGTTGGAAGCAAGTTCACGGAGATGTCTTTCGAATGCCATCCTACCC
CACAATCCTTTGCTCTTTAATTGGAAGCGGATATCATTTAGCGGCTGTCA
CCATGTGTGTCATTGGTTTTGTTATCATGGGAGATTTATACATGGGGTAA
GTATCAGTTAATATTACAGACTATCATTCTAAAGTTGGAAGTAAACATTA
TAATAGATGAACCAAAATAAACAAGTTGCAAAATGA

Coding sequence (CDS) from alignment at sc0000450:57026..60061-

>TCONS_00023299 ID=TCONS_00023299|Name=TCONS_00023299|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at sc0000450:57026..60061- (Clytia hemisphaerica)
GAACGTGATTTGGGAGATGAATATGGTTGGAAGCAAGTTCACGGAGATGT
CTTTCGAATGCCATCCTACCCCACAATCCTTTGCTCTTTAATTGGAAGCG
GATATCATTTAGCGGCTGTCACCATGTGTGTCATTGGTTTTGTTATCATG
GGAGATTTATACATGGGGTAAATTCATTGGTTTTCCATCTTCAATTCCTT
CATGATGGTCATCTTTTTGGTTGGTTTGGTCAGTATGATCTTGATGAGAA
CTTTACGAAAAGATTACGCAAGATACAGCAAAGAAGATGACCTAGATGAT
ATGGTCACTTGGAAACAATCACAAATGACTTACGAAAAACGTTATGAAAA
ATACTTGGACCCAGGCTTTTTCCAGCACAGGATTGTAGAAATCAATTTGA
CGAGTGAAAATAAAGTGAAGGTCGAGGAAGGTGGTGATCTTCCATTTACT
TATCAAGGAATTGTTGGTGAAAAGAATGAAGACGATGTATTATATATGTG
GACACACAAGAAATTCGAAATAGGGTACAATGGTGACCAAGAACGTGATT
TGGGAGATGAATATGGTTGGAAGCAAGTTCACGGAGATGTCTTTCGAATG
CCATCCTACCCCACAATCCTTTGCTCTTTAATTGGAAGCGGATATCATTT
AGCGGCTGTCACCATGTGTGTCATTGGTTTTGTTATCATGGGAGATTTAT
ACATGGGGTAAATTCATTGGTTTTCCATCTTCAATTCCTTCATGATGGTC
ATCTTTTTGGTTGGTTTGGTCAGTATGATCTTGATGAGAACTTTACGAAA
AGATTACGCAAGATACAGCAAAGAAGATGACCTAGATGATATGGTCACTT
GGAAACAATCACAAATGACTTACGAAAAACGTTATGAAAAATACTTGGAC
CCAGGCTTTTTCCAGCACAGGATTGTAGAAATCAATTTGACGAGTGAAAA
TAAAGTGAAGGTCGAGGAAGGTGGTGATCTTCCATTTACTTATCAAGGAA
TTGTTGGTGAAAAGAATGAAGACGATGTATTATATATGTGGACACACAAG
AAATTCGAAATAGGGTACAATGGTGACCAAGAACGTGATTTGGGAGATGA
ATATGGTTGGAAGCAAGTTCACGGAGATGTCTTTCGAATGCCATCCTACC
CCACAATCCTTTGCTCTTTAATTGGAAGCGGATATCATTTAGCGGCTGTC
ACCATGTGTGTCATTGGTTTTGTTATCATGGGAGATTTATACATGGGGTA
AATTCATTGGTTTTCCATCTTCAATTCCTTCATGATGGTCATCTTTTTGG
TTGGTTTGGTCAGTATGATCTTGATGAGAACTTTACGAAAAGATTACGCA
AGATACAGCAAAGAAGATGACCTAGATGATATGGTCACTTGGAAACAATC
ACAAATGACTTACGAAAAACGTTATGAAAAATACTTGGACCCAGGCTTTT
TCCAGCACAGGATTGTAGAAATCAATTTGACGAGTGAAAATAAAGTGAAG
GTCGAGGAAGGTGGTGATCTTCCATTTACTTATCAAGGAATTGTTGGTGA
AAAGAATGAAGACGATGTATTATATATGTGGACACACAAGAAATTCGAAA
TAGGGTACAATGGTGACCAAGAACGTGATTTGGGAGATGAATATGGTTGG
AAGCAAGTTCACGGAGATGTCTTTCGAATGCCATCCTACCCCACAATCCT
TTGCTCTTTAATTGGAAGCGGATATCATTTAGCGGCTGTCACCATGTGTG
TCATTGGTTTTGTTATCATGGGAGATTTATACATGGGGTAAATTCATTGG
TTTTCCATCTTCAATTCCTTCATGATGGTCATCTTTTTGGTTGGTTTGGT
CAGTATGATCTTGATGAGAACTTTACGAAAAGATTACGCAAGATACAGCA
AAGAAGATGACCTAGATGATATGGTCACTTGGAAACAATCACAAATGACT
TACGAAAAACGTTATGAAAAATACTTGGACCCAGGCTTTTTCCAGCACAG
GATTGTAGAAATCAATTTGACGAGTGAAAATAAAGTGAAGGTCGAGGAAG
GTGGTGATCTTCCATTTACTTATCAAGGAATTGTTGGTGAAAAGAATGAA
GACGATGTATTATATATGTGGACACACAAGAAATTCGAAATAGGGTACAA
TGGTGACCAAGAACGTGATTTGGGAGATGAATATGGTTGGAAGCAAGTTC
ACGGAGATGTCTTTCGAATGCCATCCTACCCCACAATCCTTTGCTCTTTA
ATTGGAAGCGGATATCATTTAGCGGCTGTCACCATGTGTGTCATTGGTTT
TGTTATCATGGGAGATTTATACATGGGGTAAATTCATTGGTTTTCCATCT
TCAATTCCTTCATGATGGTCATCTTTTTGGTTGGTTTGGTCAGTATGATC
TTGATGAGAACTTTACGAAAAGATTACGCAAGATACAGCAAAGAAGATGA
CCTAGATGATATGGTCACTTGGAAACAATCACAAATGACTTACGAAAAAC
GTTATGAAAAATACTTGGACCCAGGCTTTTTCCAGCACAGGATTGTAGAA
ATCAATTTGACGAGTGAAAATAAAGTGAAGGTCGAGGAAGGTGGTGATCT
TCCATTTACTTATCAAGGAATTGTTGGTGAAAAGAATGAAGACGATGTAT
TATATATGTGGACACACAAGAAATTCGAAATAGGGTACAATGGTGACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013103XLOC_013103Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023299-exon-sc0000450-1575043694:59976..60061TCONS_00023299-exon-sc0000450-1575043694:59976..60061Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1575043694:58886..58960TCONS_00023299-exon-sc0000450-1575043694:58886..58960Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1575043694:58544..58621TCONS_00023299-exon-sc0000450-1575043694:58544..58621Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1575043694:57874..58005TCONS_00023299-exon-sc0000450-1575043694:57874..58005Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1575043694:57026..57282TCONS_00023299-exon-sc0000450-1575043694:57026..57282Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1510915933:59976..60061TCONS_00023299-exon-sc0000450-1510915933:59976..60061Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1510915933:58886..58960TCONS_00023299-exon-sc0000450-1510915933:58886..58960Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1510915933:58544..58621TCONS_00023299-exon-sc0000450-1510915933:58544..58621Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1510915933:57874..58005TCONS_00023299-exon-sc0000450-1510915933:57874..58005Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1510915933:57026..57282TCONS_00023299-exon-sc0000450-1510915933:57026..57282Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1491911889:59976..60061TCONS_00023299-exon-sc0000450-1491911889:59976..60061Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1491911889:58886..58960TCONS_00023299-exon-sc0000450-1491911889:58886..58960Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1491911889:58544..58621TCONS_00023299-exon-sc0000450-1491911889:58544..58621Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1491911889:57874..58005TCONS_00023299-exon-sc0000450-1491911889:57874..58005Clytia hemisphaericaexon
TCONS_00023299-exon-sc0000450-1491911889:57026..57282TCONS_00023299-exon-sc0000450-1491911889:57026..57282Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023299-proteinTCONS_00023299-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000450supercontigsc0000450:57026..60061 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
107.619	112.707	81.5858	78.2244	101.739	79.4032	136.946	157.864	118.515	118.695	91.7894	91.354	64.8725	57.4874	58.9458	66.5601	82.7594	88.7999	39.5138	56.3242	41.6698	44.9228	58.6386	62.9317	70.6363	68.3149	52.3623	37.7919	70.8608	61.9506
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004240EMP70
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00023299 vs. Swiss-Prot (Human)
Match: TM9S3 (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 2.149e-66
Identity = 118/178 (66.29%), Postives = 146/178 (82.02%), Query Frame = 3 
Query:    3 GIVGEKNED-DVLYMWTHKKFEIGYNGDQIVEINLTSENKVKVEEGGDLPFTYQVTWKQSQMTYEKRYEKYLDPGFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKXXXXXXXXXXXXXXYGWKQVHGDVFRMPSYPTILCSLIGSGYHLAAVTMCVIGFVIMGDLY 533
            GIVGE +E+ +  Y+WT+KK EIG+NG++IV++NLTSE KVK+     +  +Y V WK+S + +E R++KYLDP FFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKE+++DDM+RDLGDEYGWKQVHGDVFR  S+P I  SLIGSG  + AV++ VI   ++ DLY
Sbjct:  141 GIVGEADENGEDYYLWTYKKLEIGFNGNRIVDVNLTSEGKVKLVPNTKIQMSYSVKWKKSDVKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY 318
The following BLAST results are available for this feature:
BLAST of TCONS_00023299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM9S32.149e-6666.29Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
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