TCONS_00023326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023326
Unique NameTCONS_00023326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023326 ID=TCONS_00023326|Name=TCONS_00023326|organism=Clytia hemisphaerica|type=transcript|length=477bp
CTCTTATATTCTATTTCTCTTCTCTATTATATGGCGGTGGAAGGAGAGGC
GGAGAGCAAAGTGGATGTGCTAAAACCTGGTGAAATGAAATCATTTAGAA
TAGAATGGAATGGTGCTTCTTACTCCTTTACTTGATATCTGCTCCTATGC
CAATATGTCAAAAGTAACTATTGCCTCACTCCGAATATATTTGGCGTACT
GTGCACCATTTCCAGACTGGCTCAAACACAATCAAATGTTATCAAATGCA
TACGAATCTCAATTAAACACAATTAGATGTCAATCAAATATCAAATCTAA
TGGGAATATCGGTAATATTCCATTCAGATTTGATCCCCTTCGCTGGTGTA
GTGTGTAGCTAGTCTAGTCTAGTGTAGCTGGGAGACCCGGCTACAATGTC
CGTGTGGTTTTGAGGTATAGCATTTAGTTCGAGCAGAAAATATCAGAGTT
TTGACATAGTAGCCGGGAATTATTGAA
Run BLAST on NCBI

transcript from alignment at sc0000450:4085..4561

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023326 ID=TCONS_00023326|Name=TCONS_00023326|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at sc0000450:4085..4561 (Clytia hemisphaerica)
TTCAATAATTCCCGGCTACTATGTCAAAACTCTGATATTTTCTGCTCGAA
CTAAATGCTATACCTCAAAACCACACGGACATTGTAGCCGGGTCTCCCAG
CTACACTAGACTAGACTAGCTACACACTACACCAGCGAAGGGGATCAAAT
CTGAATGGAATATTACCGATATTCCCATTAGATTTGATATTTGATTGACA
TCTAATTGTGTTTAATTGAGATTCGTATGCATTTGATAACATTTGATTGT
GTTTGAGCCAGTCTGGAAATGGTGCACAGTACGCCAAATATATTCGGAGT
GAGGCAATAGTTACTTTTGACATATTGGCATAGGAGCAGATATCAAGTAA
AGGAGTAAGAAGCACCATTCCATTCTATTCTAAATGATTTCATTTCACCA
GGTTTTAGCACATCCACTTTGCTCTCCGCCTCTCCTTCCACCGCCATATA
ATAGAGAAGAGAAATAGAATATAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013113XLOC_013113Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023326-exon-sc0000450-1491911889:4085..4561TCONS_00023326-exon-sc0000450-1491911889:4085..4561Clytia hemisphaericaexon
TCONS_00023326-exon-sc0000450-1510915933:4085..4561TCONS_00023326-exon-sc0000450-1510915933:4085..4561Clytia hemisphaericaexon
TCONS_00023326-exon-sc0000450-1575043694:4085..4561TCONS_00023326-exon-sc0000450-1575043694:4085..4561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000450supercontigsc0000450:4085..4561 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264759	0.645455	0.899322	1.31977	2.4993	1.69284	1.02117	1.75268	1.33865	0.414532	0.134118	1.32246	0.968457	1.46291	0.225509	0.322674	0.397508	0.509291	0	0.147256	0.127992	0.37458	0.303568	0	3.12686	2.53696	0	0.193722	0.587724	0.1497
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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