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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023329 ID=TCONS_00023329|Name=TCONS_00023329|organism=Clytia hemisphaerica|type=transcript|length=1021bp
TCACTTCCGACAGATTGGTTACACGCGTTTATTGTTCCTGTTTATAAAGG
TGGAAACAAGGACAAAAATCAGGCTGAAAACTAACGGCCTGTGTCTCTCA
CATCGATTTGTTGTAAATGTTTAGAACATATCATATACAGTAACATCATG
ACCCATTTGAACAAGAATAAAGTGTTAAGTGACTACCAGCATGGATTTAG
AGAAAACCGATCATGTGTAAGCCAACTATTGACCACTGTAAATGACTTTG
CTAAAAAcctaaacaacaaacaacaaactgATTCAATATTATTAGACTTT
AGCAAAGCCTTCGATAAGTTTAACCATTTTAAGCTTTGTCGTAAAGTTTC
TCACTATGGTATTCGTGGCTCCACACTGAAATGGATCGAGGCTTTCCTTA
GTAATCGCACTCAACAGGTTATCTTAAATggcaaacattcgaaaaaggcC
AATGTTTTGTCAGGAGTACCACAAGGCACCGTGCTTGGGCCACTGCTATT
TTTGATATACATTTTAATGATATGCCTTCTTATGTCCAATCAAATATCCG
TTTATTCGCTGATGTGATGATGCTTATTTATATCGTACCATAGAAAGCAT
GGCTGACCCTCTCATTCTCCAAGAGGATCTTACAGCTCTACAAGAATGGG
AAACACTCTGGGACTTCTTCCATGTCATGGAATTCCACCCACAAAAATGC
AAGCATCTCACCTTCACGAACAAAACCAAACCCATAGAGAATCTGTTTAT
TCAATCCATAACGAGAACCTTGAGAAAGTATTAAATGCCAAATATCTCGG
GATGACTTTAAACAAGAAGCTTAAGTGGAATACACACATCGATGCTATTT
GTAAGAAAGCCAACCAAAAACGATCGTTCTTACAAAGAAATTTGCGAGGA
TGTTCTCGTAAAATAAAGGAGAAAGCGTTCAACATTTATGTCCGACCAAT
CGCATCGTATGCTTCACCAGTTTGGAATCCTATATCAAATCAATCACTTT
GCGATCAACTTGAAATGGTCC Run BLAST on NCBI protein sequence of TCONS_00023329-protein >TCONS_00023329-protein ID=TCONS_00023329-protein|Name=TCONS_00023329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MTHLNKNKVLSDYQHGFRENRSCVSQLLTTVNDFAKNLNNKQQTDSILLD
FSKAFDKFNHFKLCRKVSHYGIRGSTLKWIEAFLSNRTQQVILNGKHSKK
ANVLSGVPQGTVLGPLLFLIYILMICLLMSNQISVYSLM Run BLAST on NCBI transcript from alignment at sc0000450:10646..11666 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023329 ID=TCONS_00023329|Name=TCONS_00023329|organism=Clytia hemisphaerica|type=transcript|length=1021bp|location=Sequence derived from alignment at sc0000450:10646..11666 (Clytia hemisphaerica)
GGACCATTTCAAGTTGATCGCAAAGTGATTGATTTGATATAGGATTCCAA
ACTGGTGAAGCATACGATGCGATTGGTCGGACATAAATGTTGAACGCTTT
CTCCTTTATTTTACGAGAACATCCTCGCAAATTTCTTTGTAAGAACGATC
GTTTTTGGTTGGCTTTCTTACAAATAGCATCGATGTGTGTATTCCACTTA
AGCTTCTTGTTTAAAGTCATCCCGAGATATTTGGCATTTAATACTTTCTC
AAGGTTCTCGTTATGGATTGAATAAACAGATTCTCTATGGGTTTGGTTTT
GTTCGTGAAGGTGAGATGCTTGCATTTTTGTGGGTGGAATTCCATGACAT
GGAAGAAGTCCCAGAGTGTTTCCCATTCTTGTAGAGCTGTAAGATCCTCT
TGGAGAATGAGAGGGTCAGCCATGCTTTCTATGGTACGATATAAATAAGC
ATCATCACATCAGCGAATAAACGGATATTTGATTGGACATAAGAAGGCAT
ATCATTAAAATGTATATCAAAAATAGCAGTGGCCCAAGCACGGTGCCTTG
TGGTACTCCTGACAAAACATTGgcctttttcgaatgtttgccATTTAAGA
TAACCTGTTGAGTGCGATTACTAAGGAAAGCCTCGATCCATTTCAGTGTG
GAGCCACGAATACCATAGTGAGAAACTTTACGACAAAGCTTAAAATGGTT
AAACTTATCGAAGGCTTTGCTAAAGTCTAATAATATTGAATcagtttgtt
gtttgttgtttaggTTTTTAGCAAAGTCATTTACAGTGGTCAATAGTTGG
CTTACACATGATCGGTTTTCTCTAAATCCATGCTGGTAGTCACTTAACAC
TTTATTCTTGTTCAAATGGGTCATGATGTTACTGTATATGATATGTTCTA
AACATTTACAACAAATCGATGTGAGAGACACAGGCCGTTAGTTTTCAGCC
TGATTTTTGTCCTTGTTTCCACCTTTATAAACAGGAACAATAAACGCGTG
TAACCAATCTGTCGGAAGTGA Coding sequence (CDS) from alignment at sc0000450:10646..11666 >TCONS_00023329 ID=TCONS_00023329|Name=TCONS_00023329|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000450:10646..11666 (Clytia hemisphaerica)
TCACATCAGCGAATAAACGGATATTTGATTGGACATAAGAAGGCATATCA
TTAAAATGTATATCAAAAATAGCAGTGGCCCAAGCACGGTGCCTTGTGGT
ACTCCTGACAAAACATTGgcctttttcgaatgtttgccATTTAAGATAAC
CTGTTGAGTGCGATTACTAAGGAAAGCCTCGATCCATTTCAGTGTGGAGC
CACGAATACCATAGTGAGAAACTTTACGACAAAGCTTAAAATGGTTAAAC
TTATCGAAGGCTTTGCTAAAGTCTAATAATATTGAATcagtttgttgttt
gttgtttaggTTTTTAGCAAAGTCATTTACAGTGGTCAATAGTTGGCTTA
CACATGATCGGTTTTCTCTAAATCCATGCTGGTAGTCACTTAACACTTTA
TTCTTGTTCAAATGGGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023329-exon-sc0000450-1491911889:10646..11666 | TCONS_00023329-exon-sc0000450-1491911889:10646..11666 | Clytia hemisphaerica | exon |
| TCONS_00023329-exon-sc0000450-1510915933:10646..11666 | TCONS_00023329-exon-sc0000450-1510915933:10646..11666 | Clytia hemisphaerica | exon |
| TCONS_00023329-exon-sc0000450-1575043694:10646..11666 | TCONS_00023329-exon-sc0000450-1575043694:10646..11666 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000450 | supercontig | sc0000450:10646..11666 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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