TCONS_00023340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023340
Unique NameTCONS_00023340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1226

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023340 ID=TCONS_00023340|Name=TCONS_00023340|organism=Clytia hemisphaerica|type=transcript|length=1226bp
GAAAGATGGACATTTCTCCACAAGCGGGACGACAGCGACTGTAGTGAATT
TACGCCAAAACAAAGTATAAGTAGCACATGTTGGTGATTCTGCAGCTGTA
CATTGCCAcgatttaaaacttttttcaactttgTATGGAATTTTTAAAGG
CGTCCAGGTAGAAATAATGAGTTTGCTAGACAAGAAGCCGAAAGATTTAC
ACGAAAAATAAAGAACGATaagaaaaagcaaacaaaaagaaaacacaaat
cAAAGAAACAAGATCTATCGAATATGCATTATTACCCGATAAATGAAAGC
AATACGTTACCCCTAAAGAACACAAGAAGCTGTACACGACCTGTCCTTAC
CGAGGTTGCCCTACTGGGTTCAATGGAGTAAATATTGCTACCTACCTCAC
GAGCAAGCACCACTTGTGGGATAAGGAAATGGCTCAGATGGAGCAAAAAT
ATCGCCACAGGATGTACAATTGGTGCACGCGATTAAAGGCCTATGGTAGC
TCAAGACCGAAGTTGTGCCGGAGCTGCAAAACGTTTTACCACCGTCTAGA
TACTCATTTACGAAGCAAAATACATAAAATCAAGGAAGCAGCCCAGATTA
ACATTGAAACCCAAGCCTGCCAACGCACGATGAAGGATTTCCTCAACTTT
CGTGATTCATTTCAAAGTATGAAACACAACACGTTACCACCAACTCTATC
TTCAATCGAAACAAGTACGTCTAGGCGTAGATCAATTTCAACGGCAAACG
AACATATCAAGtccaaagaaaagaaagacTGGGTGCAGATTAATATGGAT
AATGAATCAAGAGATACTGAAGAAAAGTCGTAAAATCACATACACATCAT
TGAAGTTTTCATCATGTCAGAAACGAGATGACTCACTAGATTAACTGCAA
AACATCATCTTCAAATAAATTGGGAATTTATCATAGCTTGGATCACCAGA
TTTATATCTGGTTACATTTCGAGAGATACTTTTCCCATCATCGAGTAAAT
AGGAGGGTGATGAAAATGCAATTGAAGGATGATTGTAACGCAGGTGTAAG
TTTGCAAGGCTTATGAAAGCAAACTCCATATTTCAAGATCATTTGTCCTG
CTGATGTTGGTCGTAAAATTGGTTTCATTTTGTCTTATGTTTCAGTTCAT
GGCATATgaaaaagaaCAAAATGTTGTGCATGTTATTACTATTGATGTAA
TTTTCATAATGGAATTCATCTTGCGG
Run BLAST on NCBI

protein sequence of TCONS_00023340-protein

>TCONS_00023340-protein ID=TCONS_00023340-protein|Name=TCONS_00023340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MAQMEQKYRHRMYNWCTRLKAYGSSRPKLCRSCKTFYHRLDTHLRSKIHK
IKEAAQINIETQACQRTMKDFLNFRDSFQSMKHNTLPPTLSSIETSTSRR
RSISTANEHIKSKEKKDWVQINMDNESRDTEEKS
Run BLAST on NCBI

transcript from alignment at sc0000452:44891..50262+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023340 ID=TCONS_00023340|Name=TCONS_00023340|organism=Clytia hemisphaerica|type=transcript|length=5372bp|location=Sequence derived from alignment at sc0000452:44891..50262+ (Clytia hemisphaerica)
GAAAGATGGACATTTCTCCACAAGCGGGACGACAGCGACTGTAGTGAATT
TACGCCAAAACAAAGTATAAGTAGCACATGTTGGTGATTCTGCAGCTGTA
CATTGCCAcgatttaaaacttttttcaactttgTATGGAATTTTTAAAGG
CGTCCAGGTAGAAATAATGAGTTTGCTAGACAAGAAGCCGAAAGATTTAC
ACGAAAAATAAAGAACGATaagaaaaagcaaacaaaaagaaaacacaaat
cAAAGAAACAAGATCTATCGAATATGCATTATTACCCGATAAATGAAAGG
TATGTAACGGTTTACCTACTGACCTTCGAAAAATTAAATCCAAAGAAAAG
GGTAAAACTTAACAACAATAGCTTATTATTCTTTCTTCGTCTTGAATACT
GTTCTCGTTCTGTTGATAATGGCCCTTTGTGGAAACAATATTTCAGGTTT
CTTAAAGGCTGTAGAGTTTTGTTCCAGCATGCCACCAAAAGTTCATGTTA
TTAATTTTATATATATAGATTCTCAAAGAAAGTTGACTTTTCCGAATCTA
AAAAATTGTCTCTGATAGAAAAAGTGAACGAGAGACTAATGAAGGAGTTT
GGGAGTATGATCCCGTGAAGGTAAGGGATAAGGTCTTGCTTTCACCCTTT
TCgttttcactttcatgtcatCCTTGCATAAtctaatttctaattttatc
TTGTCACTTCCGTTCTAGTTTtcagtttgtttgtttatttatttttttca
tttatttatttgtcaTCTTTCGCAGTGAACTGGATGAGACCGTGACTGAG
TTGCTCAAAAAGAATAGTTCGTATTCCATGGCAGGTcactttaaatttaa
aatcttgttattattgttattacagCAATACGTTACCCCTAAAGAACACA
AGAAGCTGTACACGACCTGTCCTTACCGAGGTTGCCCTACTGGGTTCAAT
GGAGTAAATATTGCTACCTACCTCACGAGCAAGCACCACTTGTGGGATAA
GGAAATGGCTCAGATGGAGCAAAAATATCGCCACAGGTacttcattttaa
tttaatcgaaaacAGACACACGTGGTATCGAGATAACTGTAACTTCTATT
ACTAATGTACTCATAACATTGGCGCCTCAGAAGTGAGCTCAGCgctaata
tttttatttatacaaagaAAGAATGTAATCTCGATCTCCTTTGTAGGATA
AGTATTTCATATTACTGTATAAgatcattttttttcaagatataTTTCAT
TCTTTACACAGGATGTACAATTGGTGCACGCGATTAAAGGCCTATGGTAG
CTCAAGACCGAAGTTGTGCCGGAGCTGCAAAACGTTTTACCACCGTCTAG
ATACTCATTTACGAAGCAAAATACATAAAATCAAGGAAGCAGCCCAGATT
AACATTGAAACCCAAGCCTGCCAACGCACGATGAAGGATTTCCTCAACTT
TCGTGATTCATTTCAAAGTATGAAACACAACACGTAAGTGTatgaatttt
cttcattttctgttTCGCAAAACTTGTAAATAAACTTTTAAGAGTGCAGA
TGGGCTTGGTTTAGCTATTAttactttttttcctttttccaatGGAAAGT
ATTGAGTTAGTAACTGACCTAATATATTCATTGATCTTATTGGAAAGAAA
cacattttgtatttttaatctTTATATAGGTTACCACCAACTCTATCTTC
AATCGAAACAAGTACGTCTAGGCGTAGATCAATTTCAACGGCAAACGAAC
ATATCAAGtccaaagaaaagaaagacTGGGTATGTCATAATTTAAGGGTC
ACTGCTTTCTTCTTATACAGTTAATTGAAATCTTTATCGACGGTAACATC
AAGTTCGCGGTCATATCATCAACAAAAAAGCACGTCTCCATCTCCAAGAT
GTGGTTCAGCCTCACCAGAGTAAATGAAAAATggaatggaaaataaaaaa
cacaTTCAGAATAAGTGCATCTTCTCaagtttaaaattcaaattatcaCT
TAAAGTTTCTTCTGGaagatttgaattttaaagTTGAAAAGATGCACTTA
TTCGGAATTTGCTTTTTGTTTtatatcttgaatttttttggctGCAAAAA
AGGATTTTGGTTGTATCTGTTAAAAGTCAACTTTGTTTCTATACTTCTAG
ACTTTTTTCTGTATTGGTTCTTGTtttatatcatattttcaactCTGTac
caaaatattgcaaaaaaaaatttggacttTGACCGGTTCcaccattatga
aattttggatttttaggAAATGTTTTTTCCCGACACTAAATACATACCTA
TTTGTGAGTAATTACAGAAAACAGAAGTCAAAAAGCTTATTTTTACAAAG
TTCTATGCCTTTTTGAAAATACCGCCTATTTTCCTCGATTTCGATCaatt
tttcggcattttcgaaTTTGTGTGTGACGTCATCACCCGAATAAagggaa
atttggaaaaaaaattatgcaaacttcTTTCCCTTTATACAAAGTCTCta
tgtaccaaatttcatgcaaaaaatccaAACCAGTCTTGAGTTATGGGGCA
ACTCCAGACCCCTAATACCCCGGGGCGGATAGGGTTAAAGAACTTGATGG
TTCCTACTACTTCTTTTTACATGATGATTTTATTATCAACTTGCGAAgta
aaatttgagcaaaattttctttttattaaaaacatttttgatgtaaagac
aaacaaattatttttcatactCTCTGTTAGGTGCAGATTAATATGGATAA
TGAATCAAGAGATACTGAAGAAAAGTCGTAAAATCACATACACATCATTG
AAGTTTTCATCATGTCAGAAACGAGATGACTCACTAGATTAACTGCAAAA
CATCATCTTCAAATAAATTGGGAATTTATCATAGCTTGGATCACCAGATT
TATATCTGGTTACATTTCGAGAGATACTTTTCCCATCATCGAGTAAATAG
GAGGGTGATGAAAATGCAATTGAAGGATGATTGTAACGCAGGTGTAAGGT
AAATTTacattttgatgttatgtgaTTACTCATTATCTTTGTTTTTGTCT
TGCATGTCTGTTCGAACGTTCAATATTCATCATTTTCAACCTTTGCTCAA
CCCTATTTACTTTTTGTACTGGGGCTTAACGTTTGACCAGCTGAACTGAA
ATCTTCGAGATTATAACCAGGTTGTGATCTGacttttgtcttttattttG
TACAGCAtaggaaaaatatctttaagtCAATTTCATACCGTTAGGTagat
cttttattttttcaactgaaaactatgaattttttttttagattagaAGA
TTTTCCGCTTTTATAATGTTTTTTAATGTCTTCATAATCAATTGATTAAa
catatcaaaagaaaaagccATTCAATTAGTTAACAAGGTTTTTACATAAG
GATTTCAGATTATTTTACATTCTGAtgttaatttttcctttttatgaAAC
AGTTTGCAAGGCTTATGAAAGCAAACTCCATATTTCAAGATCATTTGTCC
TGCTGATGTTGGTCGTAAAATTGGTTTCATTTTGTCTTATGTTTCAGTTC
ATGGCATATgaaaaaggtaaataaaaaagCTTCTGCAGAAAATGAATGTT
GAGTACAAATATTGGAAAATGGTTCTGTGCAATTTCCTATGTAGTCTAGG
GGCTAGCTCAGGTCCCGTCGGGGTTTTTATGTATAGTTATTTTGATACCT
TGGAATTGATAGTAGGGGTCTGTaggagtaaaaaaaaaaacataggtGAG
CATTTTTGGCGGAATTTAGCTTTCACCGCCTGCTGGAGCCCCCCTAGCCA
AACGTAAAATATTTTTGGCTACATACATAAGCTTATTATACATCAATCGA
TCAGAAANAAATAGGTGAGCATTTTTGGCTCATGGTCatttttccataat
ggcggaatttAGCTTTCACTGCCTGCTGGAGGCCCCCTAGCCAAACGTAA
AATATTTTTGGCTTCATACATCAGCTTATTATACatcaatcgatcagaaa
tttcacgctgattaagaaaaaggtccgAAAGatggtttgaaaattttcca
atctcCAGATAcgaagcactttcgttttcacacGCCTGTAACTTCAAAAC
ACGAATAGGTACATACCTGAAATTTTCTGCAGACCTAAACAGCGCAGTGc
tcttttaaaataaaatgttctgAATATATTGACGGCGTCAATCGTGGGCT
TGATTTAATGAAGTGGAACGGGAAATCTTTTTTACATTAGTAGGGTGTGG
CGTCAAAATCCAAAGtctgaaaattcaagatgtagcattttttaaatgaa
atttaagctattgtaagacattttgcacaatttaaaaggtcagaagtcca
aaattggttgaccccccctgggggtacttttatcaaaaatacatcCTCAA
TCAATGATATAATAAAACAAAGATATttaactaaagtctgttcagatata
attggcagtggaagcAATAATGTCTGTAACTTTTCATAGTCAAATACAAA
TGCAGACAaatgagaaaactttttttgttcgttttaaAGAATCTAATGGT
TCATATAGCATTAATAGAAAAAAGCTCAATTCTTttaatcgcaaatttaa
ccgctaaataTTAGAAATCTTTCAAAGAAGAATACATTCCAATGTAGCAC
TCTTGATTctttaaaacaagcaaaaaaatatttcacaattgtatttgact
atcaaTAAATACAGGCGTTCTTgcttccactgccaattatatctgaacag
actttagttgaCGATATCTTGACTTTATACCGTGTTTATTATATACAGTG
CCTTATAGTCGGggtttaaaaagaaagaaaggaagaaaaatgttgaaata
agGGGTTATTGATTTATTATTTTGGTACATGTCACTTACCGGAAATCTTT
ATTTAGCGCCAATCCCAAATAAGTGCCTACCTACATTCAGGATTTTGAAA
TAAATGCCGGCCTTTATTAAGCCCTCTAATAAGTGCCACATTTAGAATAA
AGACAAAATGAGAATTAAAtgccttaactcgaacaagggAAATGTAACAG
ATCATGGGATTCTATTTGCACAGTACAAAACCACGGTAGGACCCCAAATT
TCCAAGTGAGAAATGCCTCCTATGAATCAATGAATCGATCTAATTTTTAG
AACAGGTTAAAACTTCAGAATCTTCAAATCTTAGGTCTGAAAATAAGCGC
CGCCCTCTTAAAGTGCCGCACCTAAAATCACGAAAGTTAAATGCGTCGCT
TATTTGAGGACATACCGTAATATATCTGttaattattacttttattttga
ttatttttagaaCAAAATGTTGTGCATGTTATTACTATTGATGTAATTTT
CATAATGGAATTCATCTTGCGG

Coding sequence (CDS) from alignment at sc0000452:44891..50262+

>TCONS_00023340 ID=TCONS_00023340|Name=TCONS_00023340|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000452:44891..50262+ (Clytia hemisphaerica)
ATGGCTCAGATGGAGCAAAAATATCGCCACAGGATGTACAATTGGTGCAC
GCGATTAAAGGCCTATGGTAGCTCAAGACCGAAGTTGTGCCGGAGCTGCA
AAACGTTTTACCACCGTCTAGATACTCATTTACGAAGCAAAATACATAAA
ATCAAGGAAGCAGCCCAGATTAACATTGAAACCCAAGCCTGCCAACGCAC
GATGAAGGATTTCCTCAACTTTCGTGATTCATTTCAAAGTATGAAACACA
ACACGTTACCACCAACTCTATCTTCAATCGAAACAAGTACGTCTAGGCGT
AGATCAATTTCAACGGCAAACGAACATATCAAGtccaaagaaaagaaaga
cTGGGTGCAGATTAATATGGATAATGAATCAAGAGATACTGAAGAAAAGT
CGTAAATGGCTCAGATGGAGCAAAAATATCGCCACAGGATGTACAATTGG
TGCACGCGATTAAAGGCCTATGGTAGCTCAAGACCGAAGTTGTGCCGGAG
CTGCAAAACGTTTTACCACCGTCTAGATACTCATTTACGAAGCAAAATAC
ATAAAATCAAGGAAGCAGCCCAGATTAACATTGAAACCCAAGCCTGCCAA
CGCACGATGAAGGATTTCCTCAACTTTCGTGATTCATTTCAAAGTATGAA
ACACAACACGTTACCACCAACTCTATCTTCAATCGAAACAAGTACGTCTA
GGCGTAGATCAATTTCAACGGCAAACGAACATATCAAGtccaaagaaaag
aaagacTGGGTGCAGATTAATATGGATAATGAATCAAGAGATACTGAAGA
AAAGTCGTAAATGGCTCAGATGGAGCAAAAATATCGCCACAGGATGTACA
ATTGGTGCACGCGATTAAAGGCCTATGGTAGCTCAAGACCGAAGTTGTGC
CGGAGCTGCAAAACGTTTTACCACCGTCTAGATACTCATTTACGAAGCAA
AATACATAAAATCAAGGAAGCAGCCCAGATTAACATTGAAACCCAAGCCT
GCCAACGCACGATGAAGGATTTCCTCAACTTTCGTGATTCATTTCAAAGT
ATGAAACACAACACGTTACCACCAACTCTATCTTCAATCGAAACAAGTAC
GTCTAGGCGTAGATCAATTTCAACGGCAAACGAACATATCAAGtccaaag
aaaagaaagacTGGGTGCAGATTAATATGGATAATGAATCAAGAGATACT
GAAGAAAAGTCGTAAATGGCTCAGATGGAGCAAAAATATCGCCACAGGAT
GTACAATTGGTGCACGCGATTAAAGGCCTATGGTAGCTCAAGACCGAAGT
TGTGCCGGAGCTGCAAAACGTTTTACCACCGTCTAGATACTCATTTACGA
AGCAAAATACATAAAATCAAGGAAGCAGCCCAGATTAACATTGAAACCCA
AGCCTGCCAACGCACGATGAAGGATTTCCTCAACTTTCGTGATTCATTTC
AAAGTATGAAACACAACACGTTACCACCAACTCTATCTTCAATCGAAACA
AGTACGTCTAGGCGTAGATCAATTTCAACGGCAAACGAACATATCAAGtc
caaagaaaagaaagacTGGGTGCAGATTAATATGGATAATGAATCAAGAG
ATACTGAAGAAAAGTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013127XLOC_013127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023340-exon-sc0000452-1491911889:44891..45189TCONS_00023340-exon-sc0000452-1491911889:44891..45189Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1510915933:44891..45189TCONS_00023340-exon-sc0000452-1510915933:44891..45189Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1575043694:44891..45189TCONS_00023340-exon-sc0000452-1575043694:44891..45189Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1491911889:45766..45926TCONS_00023340-exon-sc0000452-1491911889:45766..45926Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1510915933:45766..45926TCONS_00023340-exon-sc0000452-1510915933:45766..45926Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1575043694:45766..45926TCONS_00023340-exon-sc0000452-1575043694:45766..45926Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1491911889:46152..46373TCONS_00023340-exon-sc0000452-1491911889:46152..46373Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1510915933:46152..46373TCONS_00023340-exon-sc0000452-1510915933:46152..46373Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1575043694:46152..46373TCONS_00023340-exon-sc0000452-1575043694:46152..46373Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1491911889:46570..46669TCONS_00023340-exon-sc0000452-1491911889:46570..46669Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1510915933:46570..46669TCONS_00023340-exon-sc0000452-1510915933:46570..46669Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1575043694:46570..46669TCONS_00023340-exon-sc0000452-1575043694:46570..46669Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1491911889:47621..47888TCONS_00023340-exon-sc0000452-1491911889:47621..47888Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1510915933:47621..47888TCONS_00023340-exon-sc0000452-1510915933:47621..47888Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1575043694:47621..47888TCONS_00023340-exon-sc0000452-1575043694:47621..47888Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1491911889:48343..48456TCONS_00023340-exon-sc0000452-1491911889:48343..48456Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1510915933:48343..48456TCONS_00023340-exon-sc0000452-1510915933:48343..48456Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1575043694:48343..48456TCONS_00023340-exon-sc0000452-1575043694:48343..48456Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1491911889:50201..50262TCONS_00023340-exon-sc0000452-1491911889:50201..50262Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1510915933:50201..50262TCONS_00023340-exon-sc0000452-1510915933:50201..50262Clytia hemisphaericaexon
TCONS_00023340-exon-sc0000452-1575043694:50201..50262TCONS_00023340-exon-sc0000452-1575043694:50201..50262Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023340-proteinTCONS_00023340-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:44891..50262 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.298132	0.145363	0.0603912	0	1.31723	1.26394	0.269099	0.545842	0.117587	0.327713	0.106029	0.023233	0.116004	0	0.198087	0.127547	0.419005	0.241575	0	0.15522	0.371014	0.197419	0	0.239086	0	0.200562	0.0478339	0.255248	0.232316	0.118347
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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