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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023362 ID=TCONS_00023362|Name=TCONS_00023362|organism=Clytia hemisphaerica|type=transcript|length=2330bp
TTGCACTAAAAGGGGAAATGACGGAGCTGAAGATGAGGCCTGGTATCGCG
TTGGGAAAATAAACCGAAACTTGGTTAAATTACATATCGGTCGTTTTTTC
AAACCAAGCAAAAAAGTAGTATTCATTAATCTTTACGATTTCATTCTCGT
TCAGATTTAGTGAAAGATTGGTCATTGGTTTTACAAAAAGATTACCGCGA
AGAATTGTAGTTAATTGCCCTTGATTTCCGTTTTAAAGGTCTTGGAGATT
CTTCTAATCATTGGTTGCCATCGCACCTCGCATCTCGCTGTCAATTGATC
AAATTTAAAGACAGAAAATAATCCCTTTACCCCGAAATGATGAAAGAAAA
TCCAACATAAAAGCTTTTGTCTTCTGGAAAAGGCTGGTTTTACCGGAAGT
CCCATATTATGTGGACGATGAACAATTATGAAATTTTAGACTCGAATCTT
CTCTAAACATGGCATTGAACAAGGAAGAAGGATAAGTTGGCTGTAATTAA
TTGATTATGAAATAATTAGTGATGAGCAAAATAATGAAACCCAGGAGTTC
CGAGTGGAGGGGGTACTTAGCGAAAATGGGTGCTGAGTATGTGCAGACGA
TAAGGGCTGGTTTTTCACCTTTGAAAGCCCCCGAAGGAACCTTGCCTTCT
atctttatgaaaaaaaaaaaaatccaaaaaactctatttttaggcagttt
taggcctaaatttacccaaaatatggtTTTCAAAAACCGGTCTCCGTCAC
TTTTGGGTACTGTCATTTCCCATAACTATGCAatgaatcagaaaaaaact
aatgaagtaaaaagctggtaacagacgaacggacggacggaaaaACGAAC
ATAGGTTAATtcaaaggacctccgaggtaggtccaataagtCCAAAGCTA
TTTAACATACCGGCTAAATGCGCATTATATTAGCTCTTCTCGATTAAGAC
AGTACCAAAGGCTAGTATATTTTGGGGCAAAGTATATGAAAGTTTTCAAA
GACATATTCGAACATTACCTGGACAACTGTATGTAAAAGAGTTGTTAGCT
TACTCCGCAGTaatgaaaaagttcaaaatcgAATCGCCAACATGTTcagc
aataaaaacaacaagCGACAACAACATATGGAATACAAGTACTAAAGAGG
CTCGAAATTCAAATCACAGATAATAAGTCCAAAAACCATTTAACATACCG
GCTAAAGGCTCATTGTATTAGCCCTTCTCGATTAAGGCAGTACTAAAGGc
tagtattttttaaatttcaatgtttGATAATCTATGTGTGGATTGTGAAA
TAATGTAACCAATTCTTGTCAAAGATATAAAAGTTATGACAATGACCTAC
ACCATATGGAGGGATTTGATTCaacatgaaaatatttcttcGTTATGTGC
AAAAAAAGGAGACAGCGAGAGATGGTGCTATAACACTAAAGAATCTTTTC
TTTAACGAGGCAACAATgaagtttgaaaagaaaaagtgaCATTGACATTG
ACATTGAATAAGCCAAAAGAACCTGGTAAAGAGAAATATATCATTGACTA
AGTGGGGAGAGAAACAGTTTTCGTGAGAAATTACGAGAAATGTTTTGCTA
AAATTATTGAGCTTTATCATTTCAATTTAGACGGAATAGTTGATTGTGGT
TTAGGCCAACAGCCTATTACTGTGggttacgagaaagaagaatttGATGG
attataaataaagattttttgacaaaaagtttcaaaattacacTTCTAAA
CTTGGTTGATTTCAATTATATTTTCAGATTCTTCATTTCTTTCTTGGGTG
AAAAATTAAAGCTTCCCCTTTCTtggatttttaactttttgaattNGACA
AGAGCCTATTACTGTGGGTTATGAGAAATAAGAATTTGATGGAtaataaa
taaagattttttgacaaaaagtttcaaaattacacTTTTAAACTTAGTTG
ATTTCTATTATATTTTCAGAttcttcatttctttctttGGTGAAAAATTA
AAGCTTCCCCTTTCTTGgatttttaacttttcgaattcATCCAACAAATC
TTTCCCCTTTTTTCCTTCAATTTATCTATATGTGTCAAggacattttaag
aaaaattatacgACCGAAAGAAATATGTCAGTCAAAAGAAACTTAAACTT
TATTCCAAGTGATGTGGATTATATAGAACCAATTATTGTAAAAGACATCC
TAAGTTATCANTTCCAAGTGATGTGGATTATATAGAACCAATTATTGTAA
AAGACATCCTAAGTTATCAAAACTACTCACACCATATTGAAGAATTTGAT
GCAACAGGAAAATATTTCTTCATCATGTGT Run BLAST on NCBI transcript from alignment at sc0000452:198074..201187+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023362 ID=TCONS_00023362|Name=TCONS_00023362|organism=Clytia hemisphaerica|type=transcript|length=3114bp|location=Sequence derived from alignment at sc0000452:198074..201187+ (Clytia hemisphaerica)
TTGCACTAAAAGGGGAAATGACGGAGCTGAAGATGAGGCCTGGTATCGCG
TTGGGAAAATAAACCGAAACTTGGTTAAATTACATATCGGTCGTTTTTTC
AAACCAAGCAAAAAAGTAGTATTCATTAATCTTTACGATTTCATTCTCGT
TCAGATTTAGTGAAAGATTGGTCATTGGTTTTACAAAAAGATTACCGCGA
AGAATTGTAGTTAATTGCCCTTGATTTCCGTTTTAAAGGTCTTGGAGATT
CTTCTAATCATTGGTTGCCATCGCACCTCGCATCTCGCTGTCAATTGATC
AAATTTAAAGACAGAAAATAATCCCTTTACCCCGAAATGATGAAAGAAAA
TCCAACATAAAAGCTTTTGTCTTCTGGAAAAGGCTGGTTTTACCGGAAGT
CCCATATTATGTGGACGATGAACAATTATGAAATTTTAGACTCGAATCTT
CTCTAAACATGGCATTGAACAAGGAAGAAGGATAAGTTGGCTGTAATTAA
TTGATTATGAAATAATTAGTGATGAGCAAAATAATGAAACCCAGGAGTTC
CGAGTGGAGGGGGTACTTAGCGAAAATGGGTGCTGAGTATGTGCAGACGA
TAAGGGCTGGTTTTTCACCTTTGAAAGCCCCCGAAGGAACCTTGCCTTCT
atctttatgaaaaaaaaaaaaatccaaaaaactctatttttaggcagttt
taggcctaaatttacccaaaatatggtTTTCAAAAACCGGTCTCCGTCAC
TTTTGGGTACTGTCATTTCCCATAACTATGCAatgaatcagaaaaaaact
aatgaagtaaaaagctggtaacagacgaacggacggacggaaaaACGAAC
ATAGGTTAATtcaaaggacctccgaggtaggtccaataagtCCAAAGCTA
TTTAACATACCGGCTAAATGCGCATTATATTAGCTCTTCTCGATTAAGAC
AGTACCAAAGGCTAGTATATTTTGGGGCAAAGTATATGAAAGTTTTCAAA
GACATATTCGAACATTACCTGGACAACTGTATGTAAAAGAGTTGTTAGCT
TACTCCGCAGTaatgaaaaagttcaaaatcgAATCGCCAACATGTTcagc
aataaaaacaacaagCGACAACAACATATGGAATACAAGTACTAAAGAGG
CTCGAAATTCAAATCACAGATAATAAGTCCAAAAACCATTTAACATACCG
GCTAAAGGCTCATTGTATTAGCCCTTCTCGATTAAGGCAGTACTAAAGGc
tagtattttttaaatttcaatgtttGATAATCTATGTGTGGATTGTGAAA
TAATGTAACCAATTCTTGTCAAAGATATAAAAGTTATGACAATGACCTAC
ACCATATGGAGGGATTTGATTCaacatgaaaatatttcttcGTTATGTGC
AAAAAAAGGAGACAGCGAGAGATGGTGCTATAACACTAAAGAATCTTTTC
TTTAACGAGGCAACAATgaagtttgaaaagaaaaagtgaCATTGACATTG
AATAAGCCAAAAGAACCTGGTAAAGAGAAATATATCATTGACTAAGTGGG
GAGAGAAACAGTTTTCGTGAGAAATTACGAAAAGTGTCTTGCTAAAATTA
TTGAGCTTTATCATTTCAATTTAGACGGAATAGTTGATTGTGGTTTAGGC
CAAGAGCCTATTACTGTGGGTTAGGAGAAAGAATTTGATGGAtaataaat
aaagattttttgacaaaaagtttcaaaattacacTTCTAAACTTAGTTGA
TTTCAATTATATTTTcagattcttcatttttttcttgggTGAAAAATTAA
GGCTTCCCCTTTCTtggatttttaactttttgaattcatccaaaaaaatc
tttcccctTTTTTCCTTCAATTTATCTATATGTGTCAAGCACATTTTAAG
ATAAATGATACAACCGAAAGAAATATGTCAGTCAAAAGAAACTTAAACTT
TATTCCAAGTGATGTGGACTATATAAAACCAATTATTGTAAAAGACATCC
TAAGTTATCAAAACTACTCACACCATATGGAAGAATTTGATGCGACAGGA
AAATATTTCTTCGTTATGTGCAAAAAAAAGGAGACAGCGAGAGATGGTGC
TATAAcactaaataattttttctttaacaaaGCAACAATGAAGTTTGAAA
AGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAGTGACATTGACATTGAATAAGCCAA
AAGAACCTGGTAAAGAGAAATATATCATTGACTAAGTGGGGAGAGAAACA
GTTTTCGTGAGAAATTACGAGAAATGTTTTGCTAAAATTATTGAGCTTTA
TCATTTCAATTTAGACGGAATAGTTGATTGTGGTTTAGGCCAACAGCCTA
TTACTGTGggttacgagaaagaagaatttGATGGattataaataaagatt
ttttgacaaaaagtttcaaaattacacTTCTAAACTTGGTTGATTTCAAT
TATATTTTCAGATTCTTCATTTCTTTCTTGGGTGAAAAATTAAAGCTTCC
CCTTTCTtggatttttaactttttgaattNGACAAGAGCCTATTACTGTG
GGTTATGAGAAATAAGAATTTGATGGAtaataaataaagattttttgaca
aaaagtttcaaaattacacTTTTAAACTTAGTTGATTTCTATTATATTTT
CAGAttcttcatttctttctttGGTGAAAAATTAAAGCTTCCCCTTTCTT
GgatttttaacttttcgaattcATCCAACAAATCTTTCCCCTTTTTTCCT
TCAATTTATCTATATGTGTCAAggacattttaagaaaaattatacgACCG
AAAGAAATATGTCAGTCAAAAGAAACTTAAACTTTATTCCAAGTGATGTG
GATTATATAGAACCAATTATTGTAAAAGACATCCTAAGTTATCANTTCCA
AGTGATGTGGATTATATAGAACCAATTATTGTAAAAGACATCCTAAGTTA
TCAAAACTACTCACACCATATTGAAGAATTTGATGCAACAGGAAAATATT
TCTTCATCATGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023362-exon-sc0000452-1491911889:198074..199569 | TCONS_00023362-exon-sc0000452-1491911889:198074..199569 | Clytia hemisphaerica | exon |
| TCONS_00023362-exon-sc0000452-1510915933:198074..199569 | TCONS_00023362-exon-sc0000452-1510915933:198074..199569 | Clytia hemisphaerica | exon |
| TCONS_00023362-exon-sc0000452-1575043694:198074..199569 | TCONS_00023362-exon-sc0000452-1575043694:198074..199569 | Clytia hemisphaerica | exon |
| TCONS_00023362-exon-sc0000452-1491911889:200354..201187 | TCONS_00023362-exon-sc0000452-1491911889:200354..201187 | Clytia hemisphaerica | exon |
| TCONS_00023362-exon-sc0000452-1510915933:200354..201187 | TCONS_00023362-exon-sc0000452-1510915933:200354..201187 | Clytia hemisphaerica | exon |
| TCONS_00023362-exon-sc0000452-1575043694:200354..201187 | TCONS_00023362-exon-sc0000452-1575043694:200354..201187 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000452 | supercontig | sc0000452:198074..201187 + |
Blast
The following BLAST results are available for this feature:
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