TCONS_00023375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023375
Unique NameTCONS_00023375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023375 ID=TCONS_00023375|Name=TCONS_00023375|organism=Clytia hemisphaerica|type=transcript|length=533bp
GCCCGATATTTATGTATCACAAATTTTAATCGAGAAAGATCAAAACAGTA
CATATCGGGCCTGTTTACACTCATTTTCATTACCGGGCCAGTTTAGAAAG
GGTAAGTATATGGCTGAGATTCGGCTCAGAGGCACACCTCAGAATATCAA
GACTCTCGCAGGCATACGCCGGTGCTTCTACCCAAGCTTACGGCGGAGAA
GCGACACAGGCTTACGGAATTGGAGACGATGGTGAAGCCACGCAAGCTTA
AACTGGAGAAACATCGATCGGAACATTTTTAGATCTTTTGAAACCAATTC
TCTGTGACATTATGTCTCAACACTTTCTTTAACTGAGTTTGGAATTATGG
CAGTAAGTTGGGAAAtctctgaaaaattaaaaagtgcgaTGAATTATGAG
GTTTTTCGGGggttttcatttataaaaattcTGTTGCACGCTCTTTTCCA
GACATATTGTCTGCACAATTAATCGAGAAAACAAATGAAAGAGcgagtga
aataatagagcaaaaaattcatgatttgaaaac
Run BLAST on NCBI

transcript from alignment at sc0000452:55044..55576

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023375 ID=TCONS_00023375|Name=TCONS_00023375|organism=Clytia hemisphaerica|type=transcript|length=533bp|location=Sequence derived from alignment at sc0000452:55044..55576 (Clytia hemisphaerica)
gttttcaaatcatgaattttttgctctattatttcactcgCTCTTTCATT
TGTTTTCTCGATTAATTGTGCAGACAATATGTCTGGAAAAGAGCGTGCAA
CAgaatttttataaatgaaaaccCCCGAAAAACCTCATAATTCAtcgcac
tttttaatttttcagagaTTTCCCAACTTACTGCCATAATTCCAAACTCA
GTTAAAGAAAGTGTTGAGACATAATGTCACAGAGAATTGGTTTCAAAAGA
TCTAAAAATGTTCCGATCGATGTTTCTCCAGTTTAAGCTTGCGTGGCTTC
ACCATCGTCTCCAATTCCGTAAGCCTGTGTCGCTTCTCCGCCGTAAGCTT
GGGTAGAAGCACCGGCGTATGCCTGCGAGAGTCTTGATATTCTGAGGTGT
GCCTCTGAGCCGAATCTCAGCCATATACTTACCCTTTCTAAACTGGCCCG
GTAATGAAAATGAGTGTAAACAGGCCCGATATGTACTGTTTTGATCTTTC
TCGATTAAAATTTGTGATACATAAATATCGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013143XLOC_013143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023375-exon-sc0000452-1491911889:55044..55576TCONS_00023375-exon-sc0000452-1491911889:55044..55576Clytia hemisphaericaexon
TCONS_00023375-exon-sc0000452-1510915933:55044..55576TCONS_00023375-exon-sc0000452-1510915933:55044..55576Clytia hemisphaericaexon
TCONS_00023375-exon-sc0000452-1575043694:55044..55576TCONS_00023375-exon-sc0000452-1575043694:55044..55576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:55044..55576 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.320337	0	0.121296	0.738329	0.583437	0.140779	0.26359	0.184546	0	0.110937	0	0.145649	0.151258	0.186532	0.133451	0.411003	0.252759	0.582	0.121804	0.10587	0	0.12555	0.456571	0.235129	0.419694	0.30029	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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