|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023381 ID=TCONS_00023381|Name=TCONS_00023381|organism=Clytia hemisphaerica|type=transcript|length=1612bp
AGGcaataaatataaacaaattttCCGATTAGTTTCGGCTGATCGCCGTT
CTCAAGGTGTATTTCTTgctaaaaaaactcgattttatacattaaaaaaa
gtatttaacgtcaattaatgacgtcattttctacTAGAATTAAAAGCCAT
CTGGAGGTGACGTCGAATTTGGGTACTAAGGGTCAATAGATTTTGGCGCT
TGGGGTGGTTCAGACGTTGTTCAGTTCTTGGTTCAATCCGAGGGGTTTCA
AGGTCTTTGGTTTGGTGATCCAAATGTTCTCGCGTTTTAATAGGATGTTG
TCTTTTTCTTCGATCAGTTTTGACTTTCGCTTTATCTCTTCAATGATGGT
GAATTTCGCATCGTTTAGGAAGTTGTGCTGGGGGTTAGCGAAGTGTAGAT
CGGCTGGTATGGAGGTTGGTGTTGGGTGTGCTGTTGCCGAGCGGTGTTTG
TTCAGTCTTACGTTGAATGTAGTTTTCGTTTTACCTACGTATTGTATTTT
ACATTTACGGCATTCCATCAAGTAGATAACACAGATGCTACGGCAATATG
TTTTATGGTATATTTTATACTCTTTGCTGGTGGTGTTGCTGGtgaatgtt
tttgtttcttttaccTGTTTGCAGCATAGACTCCTTTGGGGTGTGAGGCA
TGGGGTACATTTACCTAGGGTTGTTTTATTAAGGTTCCTGCGGACTTTGT
CATTGATGATTGTTGTCTGTCCTATTATATCTCTTAGAAGAGTTTCGACG
GTATGCAATGAAAGATTCTTCGGAGAATGACTTTTTGATTTCATCATTAA
TTTGTAATATATTCCACGTTTTGTTGATCGCTTGTCTTATGTTGGGTAGG
GCGTCGTTGTAGGTAGTTATAAAGGGTACTCTGTCCGGTTTTATTTTCGG
GTCTTTCTTTTTGAGTAGATCGTTCCTATCTTTGGTCGATGCTCTATGGA
AATGTTCTGTGATTTCTTTCTCTTTATAACCTCTTTTCCTGAAggatatt
tttaagttttcgaTCGATTTGTCGTATTCTTGTTGTTTCGTGTTGATTTG
TTTCATTATTAAGGCTTGTCCGTAGGGAATGttcttttttaaggaaaagg
ggTGGTAAGATGTGTGATGGAGATAAGATGCTCTGCCTGATGGTTTTTTA
TACGTTTTGGTGTAGAGACGGTTGTTCTTTATTTATACTGTAGTGTCGAG
GAAGTTAATTTCGGTCTTTGATGTTCCGGTCGTAAATTTGATGGAGTTAT
GAATTTGGTTGATATCACGTAGAAAGGTTTCTAGTTCGCTTGTCGAAGAT
GTTGATATCAGGAAAATATCATCGATAAATCTGTGGTACAGTAGTGACTT
GTCTTTTATTTTAGGGAATGTGTTCGTTCCCATAATAAAGTTTTCTGAAG
ATTATTCTTTTTGCAGGCTTTTCATTCAATCACAGTTGGGTCACATTTTT
CGAGTGGCCCAAAAACAGGGTTCAGCAAAATATCTACATCAAAAACATAG
TACCGTCATATTTCTAACATTGCGTTTTATGAGAACGTACTACAAtgtga
aaaaatagaaataaacgTGTCACTTTATCTTCATATGAATCGTTGTCAAA
ATAGAGGTTGGG Run BLAST on NCBI protein sequence of TCONS_00023381-protein >TCONS_00023381-protein ID=TCONS_00023381-protein|Name=TCONS_00023381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MMKSKSHSPKNLSLHTVETLLRDIIGQTTIINDKVRRNLNKTTLGKCTPC
LTPQRSLCCKQVKETKTFTSNTTSKEYKIYHKTYCRSICVIYLMECRKCK
IQYVGKTKTTFNVRLNKHRSATAHPTPTSIPADLHFANPQHNFLNDAKFT
IIEEIKRKSKLIEEKDNILLKRENIWITKPKTLKPLGLNQELNNV Run BLAST on NCBI transcript from alignment at sc0000452:82362..83973 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023381 ID=TCONS_00023381|Name=TCONS_00023381|organism=Clytia hemisphaerica|type=transcript|length=1612bp|location=Sequence derived from alignment at sc0000452:82362..83973 (Clytia hemisphaerica)
CCCAACCTCTATTTTGACAACGATTCATATGAAGATAAAGTGACAcgttt
atttctattttttcacaTTGTAGTACGTTCTCATAAAACGCAATGTTAGA
AATATGACGGTACTATGTTTTTGATGTAGATATTTTGCTGAACCCTGTTT
TTGGGCCACTCGAAAAATGTGACCCAACTGTGATTGAATGAAAAGCCTGC
AAAAAGAATAATCTTCAGAAAACTTTATTATGGGAACGAACACATTCCCT
AAAATAAAAGACAAGTCACTACTGTACCACAGATTTATCGATGATATTTT
CCTGATATCAACATCTTCGACAAGCGAACTAGAAACCTTTCTACGTGATA
TCAACCAAATTCATAACTCCATCAAATTTACGACCGGAACATCAAAGACC
GAAATTAACTTCCTCGACACTACAGTATAAATAAAGAACAACCGTCTCTA
CACCAAAACGTATAAAAAACCATCAGGCAGAGCATCTTATCTCCATCACA
CATCTTACCAccccttttccttaaaaaagaaCATTCCCTACGGACAAGCC
TTAATAATGAAACAAATCAACACGAAACAACAAGAATACGACAAATCGAt
cgaaaacttaaaaatatccTTCAGGAAAAGAGGTTATAAAGAGAAAGAAA
TCACAGAACATTTCCATAGAGCATCGACCAAAGATAGGAACGATCTACTC
AAAAAGAAAGACCCGAAAATAAAACCGGACAGAGTACCCTTTATAACTAC
CTACAACGACGCCCTACCCAACATAAGACAAGCGATCAACAAAACGTGGA
ATATATTACAAATTAATGATGAAATCAAAAAGTCATTCTCCGAAGAATCT
TTCATTGCATACCGTCGAAACTCTTCTAAGAGATATAATAGGACAGACAA
CAATCATCAATGACAAAGTCCGCAGGAACCTTAATAAAACAACCCTAGGT
AAATGTACCCCATGCCTCACACCCCAAAGGAGTCTATGCTGCAAACAggt
aaaagaaacaaaaacattcaCCAGCAACACCACCAGCAAAGAGTATAAAA
TATACCATAAAACATATTGCCGTAGCATCTGTGTTATCTACTTGATGGAA
TGCCGTAAATGTAAAATACAATACGTAGGTAAAACGAAAACTACATTCAA
CGTAAGACTGAACAAACACCGCTCGGCAACAGCACACCCAACACCAACCT
CCATACCAGCCGATCTACACTTCGCTAACCCCCAGCACAACTTCCTAAAC
GATGCGAAATTCACCATCATTGAAGAGATAAAGCGAAAGTCAAAACTGAT
CGAAGAAAAAGACAACATCCTATTAAAACGCGAGAACATTTGGATCACCA
AACCAAAGACCTTGAAACCCCTCGGATTGAACCAAGAACTGAACAACGTC
TGAACCACCCCAAGCGCCAAAATCTATTGACCCTTAGTACCCAAATTCGA
CGTCACCTCCAGATGGCTTTTAATTCTAgtagaaaatgacgtcattaatt
gacgttaaatactttttttaatgtataaaatcgagtttttttagcAAGAA
ATACACCTTGAGAACGGCGATCAGCCGAAACTAATCGGaaaatttgttta
tatttattgCCT Coding sequence (CDS) from alignment at sc0000452:82362..83973 >TCONS_00023381 ID=TCONS_00023381|Name=TCONS_00023381|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0000452:82362..83973 (Clytia hemisphaerica)
ATGATGAAATCAAAAAGTCATTCTCCGAAGAATCTTTCATTGCATACCGT
CGAAACTCTTCTAAGAGATATAATAGGACAGACAACAATCATCAATGACA
AAGTCCGCAGGAACCTTAATAAAACAACCCTAGGTAAATGTACCCCATGC
CTCACACCCCAAAGGAGTCTATGCTGCAAACAggtaaaagaaacaaaaac
attcaCCAGCAACACCACCAGCAAAGAGTATAAAATATACCATAAAACAT
ATTGCCGTAGCATCTGTGTTATCTACTTGATGGAATGCCGTAAATGTAAA
ATACAATACGTAGGTAAAACGAAAACTACATTCAACGTAAGACTGAACAA
ACACCGCTCGGCAACAGCACACCCAACACCAACCTCCATACCAGCCGATC
TACACTTCGCTAACCCCCAGCACAACTTCCTAAACGATGCGAAATTCACC
ATCATTGAAGAGATAAAGCGAAAGTCAAAACTGATCGAAGAAAAAGACAA
CATCCTATTAAAACGCGAGAACATTTGGATCACCAAACCAAAGACCTTGA
AACCCCTCGGATTGAACCAAGAACTGAACAACGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023381-exon-sc0000452-1491911889:82362..83973 | TCONS_00023381-exon-sc0000452-1491911889:82362..83973 | Clytia hemisphaerica | exon |
| TCONS_00023381-exon-sc0000452-1510915933:82362..83973 | TCONS_00023381-exon-sc0000452-1510915933:82362..83973 | Clytia hemisphaerica | exon |
| TCONS_00023381-exon-sc0000452-1575043694:82362..83973 | TCONS_00023381-exon-sc0000452-1575043694:82362..83973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000452 | supercontig | sc0000452:82362..83973 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
|
