TCONS_00023386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023386
Unique NameTCONS_00023386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023386 ID=TCONS_00023386|Name=TCONS_00023386|organism=Clytia hemisphaerica|type=transcript|length=516bp
gtgcacacctatcgtgaacagactttagaaagttctttctaaaaagtata
aaaatctTGAGTCGATCGATTTTCCAATCAGTCATCAACTTCGAAAACAG
TGCTAAAAAATACACCgtgtttatttaaaaaaatactatttatCTAACTA
TCAAAAGCaggttgaaaaataagaatatcaaCTAGTAAAAAGTACAATAA
ACCTAACTACAAATAAACTGACCTCGAAACAAGCTGAGTTGaagcacttt
gaaaaaataCGTCTATTCAATAGCAGCAAATCCACTGGACTCGATGTCCA
AAGCTTGATTCAtgtgtttgaaaaaattattcttgCTTGAGTGGACGACG
GGAAGTTTTAAAATTTGGAAGCACGTTTCTGATATTGGGAATATATGTGA
CTCATGTTCCTTGCGAAATTCAATTTTGATCGGCTTTCGGAGTCCATATG
AAGGGATgtgggttagggttagggttagggttagggttagggttagggtt
agggttagggttaggg
Run BLAST on NCBI

transcript from alignment at sc0000452:130542..131057

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023386 ID=TCONS_00023386|Name=TCONS_00023386|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at sc0000452:130542..131057 (Clytia hemisphaerica)
ccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaacc
ctaacccacATCCCTTCATATGGACTCCGAAAGCCGATCAAAATTGAATT
TCGCAAGGAACATGAGTCACATATATTCCCAATATCAGAAACGTGCTTCC
AAATTTTAAAACTTCCCGTCGTCCACTCAAGcaagaataattttttcaaa
cacaTGAATCAAGCTTTGGACATCGAGTCCAGTGGATTTGCTGCTATTGA
ATAGACGtattttttcaaagtgcttCAACTCAGCTTGTTTCGAGGTCAGT
TTATTTGTAGTTAGGTTTATTGTACTTTTTACTAGttgatattcttattt
ttcaacctGCTTTTGATAGTTAGataaatagtatttttttaaataaacac
GGTGTATTTTTTAGCACTGTTTTCGAAGTTGATGACTGATTGGAAAATCG
ATCGACTCAagatttttatactttttagaaagaactttctaaagtctgtt
cacgataggtgtgcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013154XLOC_013154Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023386-exon-sc0000452-1491911889:130542..131057TCONS_00023386-exon-sc0000452-1491911889:130542..131057Clytia hemisphaericaexon
TCONS_00023386-exon-sc0000452-1510915933:130542..131057TCONS_00023386-exon-sc0000452-1510915933:130542..131057Clytia hemisphaericaexon
TCONS_00023386-exon-sc0000452-1575043694:130542..131057TCONS_00023386-exon-sc0000452-1575043694:130542..131057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:130542..131057 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.924501	1.80307	0.65423	0.256025	0.467528	0.862065	0.148574	0.695466	0.38953	0.603551	0	0.769641	0.538	0.478901	1.37803	1.83094	0.954277	1.51202	0.368537	0.514197	2.01211	1.14503	1.46132	1.08417	0	0	1.26857	0	0.128266	0.392047
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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