TCONS_00023388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023388
Unique NameTCONS_00023388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023388 ID=TCONS_00023388|Name=TCONS_00023388|organism=Clytia hemisphaerica|type=transcript|length=385bp
AAGTTCAACAGCATAAGTTCAATCAATAAATGTTTCATTAAATTTCCAAT
CAAATCCATAAATCAGTGTCCAATAAGTTCAGGTTCAGCAGCACAAGTTC
aataattatttattcaaaTCAATTCCAAATCATTCCAAGTCGGTCAAGTT
CAACAACGATAATTCaataaaagttctttaaaaaaacttttataccAGAT
TCATATCCGGTTCGGTGGACCAAATGTCCGAAACGAAATAAGTGGGAGGA
CTGTATATGTCTATTAGATGTTTCTTCTTCTCTGTCTAGTTTCGTACTAA
TCATAAATTACAAATGTCGCGCTATTTATATATCCACGTGACCCTACTGG
TCACGTGGTCAAACTGTCAATCATAAATTCTATTC
Run BLAST on NCBI

transcript from alignment at sc0000452:136744..137128

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023388 ID=TCONS_00023388|Name=TCONS_00023388|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at sc0000452:136744..137128 (Clytia hemisphaerica)
GAATAGAATTTATGATTGACAGTTTGACCACGTGACCAGTAGGGTCACGT
GGATATATAAATAGCGCGACATTTGTAATTTATGATTAGTACGAAACTAG
ACAGAGAAGAAGAAACATCTAATAGACATATACAGTCCTCCCACTTATTT
CGTTTCGGACATTTGGTCCACCGAACCGGATATGAATCTggtataaaagt
ttttttaaagaacttttattGAATTATCGTTGTTGAACTTGACCGACTTG
GAATGATTTGGAATTGAtttgaataaataattattGAACTTGTGCTGCTG
AACCTGAACTTATTGGACACTGATTTATGGATTTGATTGGAAATTTAATG
AAACATTTATTGATTGAACTTATGCTGTTGAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013156XLOC_013156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023388-exon-sc0000452-1491911889:136744..137128TCONS_00023388-exon-sc0000452-1491911889:136744..137128Clytia hemisphaericaexon
TCONS_00023388-exon-sc0000452-1510915933:136744..137128TCONS_00023388-exon-sc0000452-1510915933:136744..137128Clytia hemisphaericaexon
TCONS_00023388-exon-sc0000452-1575043694:136744..137128TCONS_00023388-exon-sc0000452-1575043694:136744..137128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:136744..137128 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.6912	0	0.575367	0	9.64708	7.42254	7.71976	12.5932	2.92962	8.018	11.5782	4.46071	7.00659	9.29693	18.0078	21.9872	8.60252	3.98858	8.71252	5.61852	19.7821	7.63602	6.89583	10.0879	3.34876	5.72431	25.1787	21.5664	16.8909	15.2729
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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