TCONS_00023391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023391
Unique NameTCONS_00023391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023391 ID=TCONS_00023391|Name=TCONS_00023391|organism=Clytia hemisphaerica|type=transcript|length=751bp
CTGAATGTTGACGAAATTCCAACATCGATTGCAACCCTGAGAGGTGTCGA
CCTCAAAAATGTCTCCATATTTCGATACCTTGGAGCTTACATTAATTGCT
GCGAGCCTAGTACAGGAGACAGTGAAATAAATCAACGAATCCAACTCGCT
TGTCAAAAATTTGCAGAACTATCAAACCTCTTGCAAAATTTCCATATCAA
CTTGAGAACACGCATTTCATTTCTGAACTGTTTTGTGCGTAGCCGTCTTA
CCTACGCCTGTCAAAATTGGTGTCTGACTACGAATCAACTAAACAGACTA
GACATCACATACAGAACATTCTTGAGAAGAATGATATGCAATGGGTTTAA
ACAAATTGACAGAGAAAACAATGACTATCAACTAGTCATCACGAATGAGA
ATTTGCATGCACTTTATGGAACTCGTGACGTCACTGACTTTATCAAAAGT
CAACAAGCGAGCTATGTGGCACATGTAATAAGAATGCCTAACGAACGGTC
GTTGAAACAATTAATGTTTAACGATGACACAAATCGTAAACGTGGTCGAC
CTTCCAAGACACTGTTAGACCAAGTTGTTTCTGATAAAGATGTTTCAATT
GATGTATTTTGTAATAGATCATTAAATGAGAGGGTGTGAGATTGCTCTAG
GGTTCCCAACAACACACACAATAATCGTCCAGTGTCTTTGGTAGCCCCAC
AGCCAATCCATCCTTATATAGGGattagattgtaaaattttattattatt
a
Run BLAST on NCBI

protein sequence of TCONS_00023391-protein

>TCONS_00023391-protein ID=TCONS_00023391-protein|Name=TCONS_00023391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
LNVDEIPTSIATLRGVDLKNVSIFRYLGAYINCCEPSTGDSEINQRIQLA
CQKFAELSNLLQNFHINLRTRISFLNCFVRSRLTYACQNWCLTTNQLNRL
DITYRTFLRRMICNGFKQIDRENNDYQLVITNENLHALYGTRDVTDFIKS
QQASYVAHVIRMPNERSLKQLMFNDDTNRKRGRPSKTLLDQVVSDKDVSI
DVFCNRSLNERV
Run BLAST on NCBI

transcript from alignment at sc0000452:181959..182709

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023391 ID=TCONS_00023391|Name=TCONS_00023391|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at sc0000452:181959..182709 (Clytia hemisphaerica)
taataataataaaattttacaatctaatCCCTATATAAGGATGGATTGGC
TGTGGGGCTACCAAAGACACTGGACGATTATTGTGTGTGTTGTTGGGAAC
CCTAGAGCAATCTCACACCCTCTCATTTAATGATCTATTACAAAATACAT
CAATTGAAACATCTTTATCAGAAACAACTTGGTCTAACAGTGTCTTGGAA
GGTCGACCACGTTTACGATTTGTGTCATCGTTAAACATTAATTGTTTCAA
CGACCGTTCGTTAGGCATTCTTATTACATGTGCCACATAGCTCGCTTGTT
GACTTTTGATAAAGTCAGTGACGTCACGAGTTCCATAAAGTGCATGCAAA
TTCTCATTCGTGATGACTAGTTGATAGTCATTGTTTTCTCTGTCAATTTG
TTTAAACCCATTGCATATCATTCTTCTCAAGAATGTTCTGTATGTGATGT
CTAGTCTGTTTAGTTGATTCGTAGTCAGACACCAATTTTGACAGGCGTAG
GTAAGACGGCTACGCACAAAACAGTTCAGAAATGAAATGCGTGTTCTCAA
GTTGATATGGAAATTTTGCAAGAGGTTTGATAGTTCTGCAAATTTTTGAC
AAGCGAGTTGGATTCGTTGATTTATTTCACTGTCTCCTGTACTAGGCTCG
CAGCAATTAATGTAAGCTCCAAGGTATCGAAATATGGAGACATTTTTGAG
GTCGACACCTCTCAGGGTTGCAATCGATGTTGGAATTTCGTCAACATTCA
G

Coding sequence (CDS) from alignment at sc0000452:181959..182709

>TCONS_00023391 ID=TCONS_00023391|Name=TCONS_00023391|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0000452:181959..182709 (Clytia hemisphaerica)
TCACACCCTCTCATTTAATGATCTATTACAAAATACATCAATTGAAACAT
CTTTATCAGAAACAACTTGGTCTAACAGTGTCTTGGAAGGTCGACCACGT
TTACGATTTGTGTCATCGTTAAACATTAATTGTTTCAACGACCGTTCGTT
AGGCATTCTTATTACATGTGCCACATAGCTCGCTTGTTGACTTTTGATAA
AGTCAGTGACGTCACGAGTTCCATAAAGTGCATGCAAATTCTCATTCGTG
ATGACTAGTTGATAGTCATTGTTTTCTCTGTCAATTTGTTTAAACCCATT
GCATATCATTCTTCTCAAGAATGTTCTGTATGTGATGTCTAGTCTGTTTA
GTTGATTCGTAGTCAGACACCAATTTTGACAGGCGTAGGTAAGACGGCTA
CGCACAAAACAGTTCAGAAATGAAATGCGTGTTCTCAAGTTGATATGGAA
ATTTTGCAAGAGGTTTGATAGTTCTGCAAATTTTTGACAAGCGAGTTGGA
TTCGTTGATTTATTTCACTGTCTCCTGTACTAGGCTCGCAGCAATTAATG
TAAGCTCCAAGGTATCGAAATATGGAGACATTTTTGAGGTCGACACCTCT
CAGGGTTGCAATCGATGTTGGAATTTCGTCAACATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013159XLOC_013159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023391-exon-sc0000452-1491911889:181959..182709TCONS_00023391-exon-sc0000452-1491911889:181959..182709Clytia hemisphaericaexon
TCONS_00023391-exon-sc0000452-1510915933:181959..182709TCONS_00023391-exon-sc0000452-1510915933:181959..182709Clytia hemisphaericaexon
TCONS_00023391-exon-sc0000452-1575043694:181959..182709TCONS_00023391-exon-sc0000452-1575043694:181959..182709Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023391-proteinTCONS_00023391-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:181959..182709 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44006	1.46811	2.44576	2.03025	1.67718	1.04631	1.34649	1.33935	1.70994	1.77642	2.45372	2.09251	2.26374	2.03445	0.892049	1.03708	2.26037	3.6263	2.99204	2.69408	1.70877	2.12999	1.27588	3.47988	2.31919	2.50887	1.9746	1.34104	0.871827	0.962275
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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