TCONS_00023392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023392
Unique NameTCONS_00023392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023392 ID=TCONS_00023392|Name=TCONS_00023392|organism=Clytia hemisphaerica|type=transcript|length=447bp
ttttttactaaagttttgtttagtaccacccacccatatttagtaccggg
taTTACTTCATTTGTAAAgtgacttttatcaaaatatatttcaaaaacaa
aaataaaaagtacaaaatttaatttataaatcatgaaacaaaaaaattgt
tgcACCTTGGAAATAGTGTTTATTTATTATATACTTACTGTAACTTATCT
CATTTGTGTGCCATTAGGCTAGGCTAGCTAGACTAGGCtatatttattca
ttcattttattttagtacGTTAGGCACACATGGTTTCCAAGGCCTCATTT
TCAGTATCATGTCACAGTGTGAACTCAGTCTATTTAAGGCCTCACTTCAG
TCACACCTCAGAGCTACTATTTTGTGTCATGTCATGCTGACTGACCATAA
TGGCATCATAATTCATAAGGCTCTAACTTTAAAGTAATTCAATGTGT
Run BLAST on NCBI

transcript from alignment at sc0000452:215898..216344

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023392 ID=TCONS_00023392|Name=TCONS_00023392|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0000452:215898..216344 (Clytia hemisphaerica)
ACACATTGAATTACTTTAAAGTTAGAGCCTTATGAATTATGATGCCATTA
TGGTCAGTCAGCATGACATGACACAAAATAGTAGCTCTGAGGTGTGACTG
AAGTGAGGCCTTAAATAGACTGAGTTCACACTGTGACATGATACTGAAAA
TGAGGCCTTGGAAACCATGTGTGCCTAACgtactaaaataaaatgaatga
ataaatataGCCTAGTCTAGCTAGCCTAGCCTAATGGCACACAAATGAGA
TAAGTTACAGTAAGTATATAATAAATAAACACTATTTCCAAGGTgcaaca
atttttttgtttcatgatttataaattaaattttgtactttttatttttg
tttttgaaatatattttgataaaagtcacTTTACAAATGAAGTAAtaccc
ggtactaaatatgggtgggtggtactaaacaaaactttagtaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013160XLOC_013160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023392-exon-sc0000452-1491911889:215898..216344TCONS_00023392-exon-sc0000452-1491911889:215898..216344Clytia hemisphaericaexon
TCONS_00023392-exon-sc0000452-1510915933:215898..216344TCONS_00023392-exon-sc0000452-1510915933:215898..216344Clytia hemisphaericaexon
TCONS_00023392-exon-sc0000452-1575043694:215898..216344TCONS_00023392-exon-sc0000452-1575043694:215898..216344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:215898..216344 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63469	1.72469	2.79156	2.20611	0	0.158852	0.574944	0.538256	0.879306	0.336747	0	0.436874	0.315024	0.110886	0.0901659	0.397887	0.116824	0.719663	0.170504	0.362693	0.180276	0.47405	1.10432	1.14336	0.363665	0.428511	1.08108	1.17066	3.7938	1.69616
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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