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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023393 ID=TCONS_00023393|Name=TCONS_00023393|organism=Clytia hemisphaerica|type=transcript|length=1820bp
ctcagcgcgggtatgactatttgagttaaaaaacttttcaataccgcccg
ccgattgaacctttaatggcttacttaatgaccgctatatggataataat
attCTATAAGATCACGAGGCACAAATgatccaaaaaataaaaatcaaatg
ttGATAACACAGCTAGGTCGAATATGAGCAAATTCTTTAAGCAAGGATCT
TATTTAAGTCCTGCAAACGGCATTTTCGCCGGACTAAAGCACGATAAAAA
TTTCACTTCACCAGCTCAGGTACATATTCACGCAAATCAATACACTGAGA
GTTCATCGGCCTAGAATCTGGAATTCGCCTAAGGTGATTCTTCATTCACA
AGcctatcaaaaacaaagcaaaacccctGCTAAAGTTAAGAAAAGGGAGA
AATTGCTCAGCCCAAAAGCACTGACACATCGAGCCTCCTACAAATCACCT
CAGGACCAACAAAAtattatttacaaaataaattGATTCAATACGAAATT
TTTAAATGCCCATATAATCAAATAGGATACGAGGTATATTTTGTCTTAAG
ATATAACTGTTTGAAAAATTAGTTAAGACTGCAAGAGCAGCTAAGTGTTT
CAGAGATTTGCTTTTAAAGATGTTCGTTTTTACCAGTTGGAAATAAAAAG
AATCTGTCATGTCCTTTATATATACAACCCCGATCTCTTCCAAGTTCCAA
TTCACAATTGACTTTTTTTGATCGTTTATAtatgttaaaaatccatgttg
AATTCCCTCATGTACAACCTCGCTTGTTTTTGCATCGATAAGGTGCAAAA
ATTCATCATTATCAATACGAAGTAGTTGTAACAATAACATTCCAAATCTT
CTTACAAGGTTATCAAACTCCAAATCAATggtttcaaatgttttgtttcG
GACTTTATATAGCTTTCTTGACATTCCGTCTTTTAATAAATACACATTTA
TTGATGGGGTATTATTCTCAAGATAGTCTGTCACACAAAGGAAAGGTAAA
TCATTTGCATTATATATCTCAACTGGATCAATAAATTCATCATCTATATC
TGATGCAGTGTATACGTGACACTCACTGGTCTCGTATTCATAGCTCCAGA
TCTTTAATGGATTATATCGGAtaatgaaaaatctttcacaaaaataacGA
GCCTCACAGAAATCGCTTATAGAGAGTGAATCTAAAGCTTCGGGAAAACA
CACATGTATGCGTTTGCTATGTCTAAGATTGTTCTTATCAGCGACTGCAA
AATCGATGTAATGTGTTTTTCCATAGCCAAACACAATCAATAAAAAAGTA
GTCTTTCCATGTCGATGGAAATGTTTAAGAAGATACTTTTGTGGTGTCTC
CTTTTCGTTATATGTTATCGTCATGTCTGGCTCAACGCTTGTTTCAAGCC
GGATTGTTTGGAAATTGACATCTATCATCTGAGATATATCAATAAAATGA
ATTAGAATATCGTTCTCTGATTTTCTTGCGCGAATAAATTTTTTGCCAAC
GAAATCAAAGTTCCAACAGGAATTCTGCTGGCTTGGGCTAGAAATTATGA
TACTTTtattttgtaatgtttttttattttgattgaatgaaacAACGCAA
ATCGTTATGTCTTCCGTTTTTCTTCCCCTAAATGTTATTAAATGGTATTT
CCCAGTGGCATCAAAGTTGTTTTCCAAGAAGCGGTTATGCCCATCGTCAA
TAAACAAAGGCTCGATCTTTTCAATGTCTGTACTAGGTGGCACAAAATAA
CTTCGTTTTTCGCTGTccattatattttgattttactaaaatttaaaGCA
TGATTGTCAATTTCAGAAAG Run BLAST on NCBI protein sequence of TCONS_00023393-protein >TCONS_00023393-protein ID=TCONS_00023393-protein|Name=TCONS_00023393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
MDSEKRSYFVPPSTDIEKIEPLFIDDGHNRFLENNFDATGKYHLITFRGR
KTEDITICVVSFNQNKKTLQNKSIIISSPSQQNSCWNFDFVGKKFIRARK
SENDILIHFIDISQMIDVNFQTIRLETSVEPDMTITYNEKETPQKYLLKH
FHRHGKTTFLLIVFGYGKTHYIDFAVADKNNLRHSKRIHVCFPEALDSLS
ISDFCEARYFCERFFIIRYNPLKIWSYEYETSECHVYTASDIDDEFIDPV
EIYNANDLPFLCVTDYLENNTPSINVYLLKDGMSRKLYKVRNKTFETIDL
EFDNLVRRFGMLLLQLLRIDNDEFLHLIDAKTSEVVHEGIQHGFLTYIND
QKKSIVNWNLEEIGVVYIKDMTDSFYFQLVKTNIFKSKSLKHLAALAVLT
NFSNSYILRQNIPRILFDYMGI Run BLAST on NCBI transcript from alignment at sc0000452:230496..232315 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023393 ID=TCONS_00023393|Name=TCONS_00023393|organism=Clytia hemisphaerica|type=transcript|length=1820bp|location=Sequence derived from alignment at sc0000452:230496..232315 (Clytia hemisphaerica)
CTTTCTGAAATTGACAATCATGCtttaaattttagtaaaatcaaaatata
atggACAGCGAAAAACGAAGTTATTTTGTGCCACCTAGTACAGACATTGA
AAAGATCGAGCCTTTGTTTATTGACGATGGGCATAACCGCTTCTTGGAAA
ACAACTTTGATGCCACTGGGAAATACCATTTAATAACATTTAGGGGAAGA
AAAACGGAAGACATAACGATTTGCGTTgtttcattcaatcaaaataaaaa
aacattacaaaataAAAGTATCATAATTTCTAGCCCAAGCCAGCAGAATT
CCTGTTGGAACTTTGATTTCGTTGGCAAAAAATTTATTCGCGCAAGAAAA
TCAGAGAACGATATTCTAATTCATTTTATTGATATATCTCAGATGATAGA
TGTCAATTTCCAAACAATCCGGCTTGAAACAAGCGTTGAGCCAGACATGA
CGATAACATATAACGAAAAGGAGACACCACAAAAGTATCTTCTTAAACAT
TTCCATCGACATGGAAAGACTACTTTTTTATTGATTGTGTTTGGCTATGG
AAAAACACATTACATCGATTTTGCAGTCGCTGATAAGAACAATCTTAGAC
ATAGCAAACGCATACATGTGTGTTTTCCCGAAGCTTTAGATTCACTCTCT
ATAAGCGATTTCTGTGAGGCTCgttatttttgtgaaagatttttcattaT
CCGATATAATCCATTAAAGATCTGGAGCTATGAATACGAGACCAGTGAGT
GTCACGTATACACTGCATCAGATATAGATGATGAATTTATTGATCCAGTT
GAGATATATAATGCAAATGATTTACCTTTCCTTTGTGTGACAGACTATCT
TGAGAATAATACCCCATCAATAAATGTGTATTTATTAAAAGACGGAATGT
CAAGAAAGCTATATAAAGTCCgaaacaaaacatttgaaaccATTGATTTG
GAGTTTGATAACCTTGTAAGAAGATTTGGAATGTTATTGTTACAACTACT
TCGTATTGATAATGATGAATTTTTGCACCTTATCGATGCAAAAACAAGCG
AGGTTGTACATGAGGGAATTcaacatggatttttaacataTATAAACGAT
CAAAAAAAGTCAATTGTGAATTGGAACTTGGAAGAGATCGGGGTTGTATA
TATAAAGGACATGACAGATTCTTTTTATTTCCAACTGGTAAAAACGAACA
TCTTTAAAAGCAAATCTCTGAAACACTTAGCTGCTCTTGCAGTCTTAACT
AATTTTTCAAACAGTTATATCTTAAGACAAAATATACCTCGTATCCTATT
TGATTATATGGGCATTTAAAAATTTCGTATTGAATCaatttattttgtaa
ataataTTTTGTTGGTCCTGAGGTGATTTGTAGGAGGCTCGATGTGTCAG
TGCTTTTGGGCTGAGCAATTTCTCCCTTTTCTTAACTTTAGCaggggttt
tgctttgtttttgataggCTTGTGAATGAAGAATCACCTTAGGCGAATTC
CAGATTCTAGGCCGATGAACTCTCAGTGTATTGATTTGCGTGAATATGTA
CCTGAGCTGGTGAAGTGAAATTTTTATCGTGCTTTAGTCCGGCGAAAATG
CCGTTTGCAGGACTTAAATAAGATCCTTGCTTAAAGAATTTGCTCATATT
CGACCTAGCTGTGTTATCaacatttgatttttattttttggatcATTTGT
GCCTCGTGATCTTATAGaatattattatccatatagcggtcattaagtaa
gccattaaaggttcaatcggcgggcggtattgaaaagttttttaactcaa
atagtcatacccgcgctgag Coding sequence (CDS) from alignment at sc0000452:230496..232315 >TCONS_00023393 ID=TCONS_00023393|Name=TCONS_00023393|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at sc0000452:230496..232315 (Clytia hemisphaerica)
atggACAGCGAAAAACGAAGTTATTTTGTGCCACCTAGTACAGACATTGA
AAAGATCGAGCCTTTGTTTATTGACGATGGGCATAACCGCTTCTTGGAAA
ACAACTTTGATGCCACTGGGAAATACCATTTAATAACATTTAGGGGAAGA
AAAACGGAAGACATAACGATTTGCGTTgtttcattcaatcaaaataaaaa
aacattacaaaataAAAGTATCATAATTTCTAGCCCAAGCCAGCAGAATT
CCTGTTGGAACTTTGATTTCGTTGGCAAAAAATTTATTCGCGCAAGAAAA
TCAGAGAACGATATTCTAATTCATTTTATTGATATATCTCAGATGATAGA
TGTCAATTTCCAAACAATCCGGCTTGAAACAAGCGTTGAGCCAGACATGA
CGATAACATATAACGAAAAGGAGACACCACAAAAGTATCTTCTTAAACAT
TTCCATCGACATGGAAAGACTACTTTTTTATTGATTGTGTTTGGCTATGG
AAAAACACATTACATCGATTTTGCAGTCGCTGATAAGAACAATCTTAGAC
ATAGCAAACGCATACATGTGTGTTTTCCCGAAGCTTTAGATTCACTCTCT
ATAAGCGATTTCTGTGAGGCTCgttatttttgtgaaagatttttcattaT
CCGATATAATCCATTAAAGATCTGGAGCTATGAATACGAGACCAGTGAGT
GTCACGTATACACTGCATCAGATATAGATGATGAATTTATTGATCCAGTT
GAGATATATAATGCAAATGATTTACCTTTCCTTTGTGTGACAGACTATCT
TGAGAATAATACCCCATCAATAAATGTGTATTTATTAAAAGACGGAATGT
CAAGAAAGCTATATAAAGTCCgaaacaaaacatttgaaaccATTGATTTG
GAGTTTGATAACCTTGTAAGAAGATTTGGAATGTTATTGTTACAACTACT
TCGTATTGATAATGATGAATTTTTGCACCTTATCGATGCAAAAACAAGCG
AGGTTGTACATGAGGGAATTcaacatggatttttaacataTATAAACGAT
CAAAAAAAGTCAATTGTGAATTGGAACTTGGAAGAGATCGGGGTTGTATA
TATAAAGGACATGACAGATTCTTTTTATTTCCAACTGGTAAAAACGAACA
TCTTTAAAAGCAAATCTCTGAAACACTTAGCTGCTCTTGCAGTCTTAACT
AATTTTTCAAACAGTTATATCTTAAGACAAAATATACCTCGTATCCTATT
TGATTATATGGGCATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023393-exon-sc0000452-1491911889:230496..232315 | TCONS_00023393-exon-sc0000452-1491911889:230496..232315 | Clytia hemisphaerica | exon |
| TCONS_00023393-exon-sc0000452-1510915933:230496..232315 | TCONS_00023393-exon-sc0000452-1510915933:230496..232315 | Clytia hemisphaerica | exon |
| TCONS_00023393-exon-sc0000452-1575043694:230496..232315 | TCONS_00023393-exon-sc0000452-1575043694:230496..232315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000452 | supercontig | sc0000452:230496..232315 . |
Blast
The following BLAST results are available for this feature:
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