TCONS_00023394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023394
Unique NameTCONS_00023394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023394 ID=TCONS_00023394|Name=TCONS_00023394|organism=Clytia hemisphaerica|type=transcript|length=509bp
TAAGCCAACACAAAGGTTGTAAaatttgtaattaaattttCGTTTCACTT
CCGTCTGCCTGCAAACAATTAATAGCTACACGTTAATTAATGTCACGAGG
CCAATGTTAATTACTTtcaattgaaacaaaaaaattgaaacgaaACATAA
AGAATAAAACATTAAAGTAGGTTTTAATCAATACTTCAGCCAGTGCAACT
ATATGCTGGTAGTAAACCCCTGAAACAAATCTTAAGCAATGCTGAGAGAC
TCCTTTAGCCCCAAGTGCCCAAACTTCAGTGATTGGTGAGCCCCAGAGAG
CCAAATCCAACCATTCAAGCTTGGGTAGGGGTTTGtgcaataaaaaaaca
aaaaatactttgaaagcACGGTTTATTACTAACTATTTCAAGGCTGATTG
TGAGAGAGAATGTGATGTGGTTGGGGGGACTTGTAGCTCTTTGAGCTACC
TTTGCCCAGTGAGGTTTGTGAGTGtgtgatttttgtttattttttatgtt
tctgtATCC
Run BLAST on NCBI

transcript from alignment at sc0000452:237632..238140

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023394 ID=TCONS_00023394|Name=TCONS_00023394|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at sc0000452:237632..238140 (Clytia hemisphaerica)
GGATacagaaacataaaaaataaacaaaaatcacaCACTCACAAACCTCA
CTGGGCAAAGGTAGCTCAAAGAGCTACAAGTCCCCCCAACCACATCACAT
TCTCTCTCACAATCAGCCTTGAAATAGTTAGTAATAAACCGTgctttcaa
agtattttttgtttttttattgcaCAAACCCCTACCCAAGCTTGAATGGT
TGGATTTGGCTCTCTGGGGCTCACCAATCACTGAAGTTTGGGCACTTGGG
GCTAAAGGAGTCTCTCAGCATTGCTTAAGATTTGTTTCAGGGGTTTACTA
CCAGCATATAGTTGCACTGGCTGAAGTATTGATTAAAACCTACTTTAATG
TTTTATTCTTTATGTttcgtttcaatttttttgtttcaattgaAAGTAAT
TAACATTGGCCTCGTGACATTAATTAACGTGTAGCTATTAATTGTTTGCA
GGCAGACGGAAGTGAAACGaaaatttaattacaaattTTACAACCTTTGT
GTTGGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013162XLOC_013162Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023394-exon-sc0000452-1491911889:237632..238140TCONS_00023394-exon-sc0000452-1491911889:237632..238140Clytia hemisphaericaexon
TCONS_00023394-exon-sc0000452-1510915933:237632..238140TCONS_00023394-exon-sc0000452-1510915933:237632..238140Clytia hemisphaericaexon
TCONS_00023394-exon-sc0000452-1575043694:237632..238140TCONS_00023394-exon-sc0000452-1575043694:237632..238140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:237632..238140 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118259	0	0.133899	0	0.159479	0	0.152041	0.142339	0.199309	0	0	0	2.91007	3.43053	0.872969	2.81049	6.92458	4.27668	0.754273	1.18394	0.11434	0.167313	0	0	0.888787	0.453269	0	0.173058	0.131258	0.267463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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