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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023425 ID=TCONS_00023425|Name=TCONS_00023425|organism=Clytia hemisphaerica|type=transcript|length=867bp
NNAGTCTGTCAAGGATTGGGGGTCGGTGACTTTGGGAACTGGGCAAATTC
GACTAGTTTTCCATTCTTCTGGGAAGGTCGATGATTGGATACAATTATTG
ATGACATCGGTTAGAGATGATGTGAGATATTGGGATACTGGCTTGATGAA
TTTTGAAGGGATGTTGTCGGGTCCGGTGGAACAATCTGATCTAAGTTTCT
GGATAGCTCTCGAAACTTCATCGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGTGGAACAATCTGATCTAAGTTTCTGGATAGCTCTCGAAACTTCA
TCGTACGTAGCAGGACGGAGATGGAAGCTGTCTGGATGTTCGGGTAGTTC
TTCAATGAAAGATTTTGAGAGGTCTCCTGCATTTCTTCCTGTTGTCCTCA
TGGCAGTTGAGTTGAAAAACCTGTTAATTTCGTCTGGATCAACGTCCATG
CGTTTTTGTCTGGGATGTAgtaattttttgatgactttcCATGTTTCGGC
TGAGGATTTGTTAGCTAGGAGATTCTtgagaaatttctttttcgctCCTC
GGATGGTCGATTTGAGGTTGTTCCTCACGTTTCTTAGTTGGTCAAGTTGT
TCATTGTTGCGgttgtttttcaaatttagcCGTAGTTCATTTTTCTGCCG
TTGTAAATCTCGGACATCAAGATCTTTCATCCATTGGGACGAAGGACGGG
TCAGTTTGATCTTACGTACAGGTTCGTGACGATCGATGCACTCCGTGATA
AGTTTATTAAGTGCATTGACTTTGTCTGAGGTGTTATCGAAAGCATACAC
AATGTTTAATGGTAGNN Run BLAST on NCBI protein sequence of TCONS_00023425-protein >TCONS_00023425-protein ID=TCONS_00023425-protein|Name=TCONS_00023425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
LPLNIVYAFDNTSDKVNALNKLITECIDRHEPVRKIKLTRPSSQWMKDLD
VRDLQRQKNELRLNLKNNRNNEQLDQLRNVRNNLKSTIRGAKKKFLKNLL
ANKSSAETWKVIKKLLHPRQKRMDVDPDEINRFFNSTAMRTTGRNAGDLS
KSFIEELPEHPDSFHLRPATYDEVSRAIQKLRSDCSXXXXXXXXXXXXXX
XXXXXXXXXXXXXXR Run BLAST on NCBI transcript from alignment at sc0000453:71773..72639 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023425 ID=TCONS_00023425|Name=TCONS_00023425|organism=Clytia hemisphaerica|type=transcript|length=867bp|location=Sequence derived from alignment at sc0000453:71773..72639 (Clytia hemisphaerica)
NNCTACCATTAAACATTGTGTATGCTTTCGATAACACCTCAGACAAAGTC
AATGCACTTAATAAACTTATCACGGAGTGCATCGATCGTCACGAACCTGT
ACGTAAGATCAAACTGACCCGTCCTTCGTCCCAATGGATGAAAGATCTTG
ATGTCCGAGATTTACAACGGCAGAAAAATGAACTACGgctaaatttgaaa
aacaacCGCAACAATGAACAACTTGACCAACTAAGAAACGTGAGGAACAA
CCTCAAATCGACCATCCGAGGagcgaaaaagaaatttctcaAGAATCTCC
TAGCTAACAAATCCTCAGCCGAAACATGgaaagtcatcaaaaaattacTA
CATCCCAGACAAAAACGCATGGACGTTGATCCAGACGAAATTAACAGGTT
TTTCAACTCAACTGCCATGAGGACAACAGGAAGAAATGCAGGAGACCTCT
CAAAATCTTTCATTGAAGAACTACCCGAACATCCAGACAGCTTCCATCTC
CGTCCTGCTACGTACGATGAAGTTTCGAGAGCTATCCAGAAACTTAGATC
AGATTGTTCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATGA
AGTTTCGAGAGCTATCCAGAAACTTAGATCAGATTGTTCCACCGGACCCG
ACAACATCCCTTCAAAATTCATCAAGCCAGTATCCCAATATCTCACATCA
TCTCTAACCGATGTCATCAATAATTGTATCCAATCATCGACCTTCCCAGA
AGAATGGAAAACTAGTCGAATTTGCCCAGTTCCCAAAGTCACCGACCCCC
AATCCTTGACAGACTNN Coding sequence (CDS) from alignment at sc0000453:71773..72639 >TCONS_00023425 ID=TCONS_00023425|Name=TCONS_00023425|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000453:71773..72639 (Clytia hemisphaerica)
CTACCATTAAACATTGTGTATGCTTTCGATAACACCTCAGACAAAGTCAA
TGCACTTAATAAACTTATCACGGAGTGCATCGATCGTCACGAACCTGTAC
GTAAGATCAAACTGACCCGTCCTTCGTCCCAATGGATGAAAGATCTTGAT
GTCCGAGATTTACAACGGCAGAAAAATGAACTACGgctaaatttgaaaaa
caacCGCAACAATGAACAACTTGACCAACTAAGAAACGTGAGGAACAACC
TCAAATCGACCATCCGAGGagcgaaaaagaaatttctcaAGAATCTCCTA
GCTAACAAATCCTCAGCCGAAACATGgaaagtcatcaaaaaattacTACA
TCCCAGACAAAAACGCATGGACGTTGATCCAGACGAAATTAACAGGTTTT
TCAACTCAACTGCCATGAGGACAACAGGAAGAAATGCAGGAGACCTCTCA
AAATCTTTCATTGAAGAACTACCCGAACATCCAGACAGCTTCCATCTCCG
TCCTGCTACGTACGATGAAGTTTCGAGAGCTATCCAGAAACTTAGATCAG
ATTGTTCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023425-exon-sc0000453-1491911889:71773..72639 | TCONS_00023425-exon-sc0000453-1491911889:71773..72639 | Clytia hemisphaerica | exon |
| TCONS_00023425-exon-sc0000453-1510915933:71773..72639 | TCONS_00023425-exon-sc0000453-1510915933:71773..72639 | Clytia hemisphaerica | exon |
| TCONS_00023425-exon-sc0000453-1575043694:71773..72639 | TCONS_00023425-exon-sc0000453-1575043694:71773..72639 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000453 | supercontig | sc0000453:71773..72639 . |
Blast
The following BLAST results are available for this feature:
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