TCONS_00023433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023433
Unique NameTCONS_00023433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023433 ID=TCONS_00023433|Name=TCONS_00023433|organism=Clytia hemisphaerica|type=transcript|length=308bp
ATCGAATTCAATATTTAATCGAGTGTTTAATTTAAAGTGCTGGACTATAA
TTAAAATCATCAATCATAATAAACATTATATTATCATAATATGTTTATAA
TGTTTTAGAATCGATATCGAAAAAACGATGAAGAAGTATAACATCAGTAT
AATGCACCTTTAACaaaatattataaagaaaataaaagataatCAAAAAT
GGATTTTGCTTATATAACAAATCATAAGAGTTTGTAAAAATTCACATTTT
GTGGTCACAGTTAGCCATCAAACCTTATACTTTTTTCGAAGGAATAGACG
GAAAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000453:171985..172292

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023433 ID=TCONS_00023433|Name=TCONS_00023433|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at sc0000453:171985..172292 (Clytia hemisphaerica)
CTTTTTTCCGTCTATTCCTTCGAAAAAAGTATAAGGTTTGATGGCTAACT
GTGACCACAAAATGTGAATTTTTACAAACTCTTATGATTTGTTATATAAG
CAAAATCCATTTTTGattatcttttattttctttataatattttGTTAAA
GGTGCATTATACTGATGTTATACTTCTTCATCGTTTTTTCGATATCGATT
CTAAAACATTATAAACATATTATGATAATATAATGTTTATTATGATTGAT
GATTTTAATTATAGTCCAGCACTTTAAATTAAACACTCGATTAAATATTG
AATTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013184XLOC_013184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023433-exon-sc0000453-1491911889:171985..172292TCONS_00023433-exon-sc0000453-1491911889:171985..172292Clytia hemisphaericaexon
TCONS_00023433-exon-sc0000453-1510915933:171985..172292TCONS_00023433-exon-sc0000453-1510915933:171985..172292Clytia hemisphaericaexon
TCONS_00023433-exon-sc0000453-1575043694:171985..172292TCONS_00023433-exon-sc0000453-1575043694:171985..172292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000453supercontigsc0000453:171985..172292 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.9398	3.14339	3.24425	4.76099	2.89802	3.05341	6.44666	4.74201	1.50909	5.2339	0.362868	4.05509	1.66742	0	1.83039	1.09127	3.22646	3.30702	0.761472	1.19524	3.80922	3.04037	8.21326	10.8272	2.30727	3.08877	0.982227	1.57239	8.34821	6.07536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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