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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023445 ID=TCONS_00023445|Name=TCONS_00023445|organism=Clytia hemisphaerica|type=transcript|length=3819bpRun BLAST on NCBI transcript from alignment at sc0000454:113528..140152+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023445 ID=TCONS_00023445|Name=TCONS_00023445|organism=Clytia hemisphaerica|type=transcript|length=26625bp|location=Sequence derived from alignment at sc0000454:113528..140152+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023445 vs. Swiss-Prot (Human)
Match: HERC1 (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2) HSP 1 Score: 913.294 bits (2359), Expect = 0.000e+0 Identity = 474/997 (47.54%), Postives = 646/997 (64.79%), Query Frame = 1
Query: 289 IIGRQFKYEQTITSNSTHLVYSNYMQSLFNIAVLLKAGQLV-SPPLPS----------------------FESTILSGLALRHRTPLPRDF-VDSLENVMQSS----KDNSYWTLQQDQQIISWYNSNPKDWEPKISQSIYAWGSGCHGQLAELKLGRLEPDLVTTITSVRSIVCGQNCTFILQTNGTVKACGEGSYGRLGQGTSDDEPTPTTIAELQGYVIVQLATSLGGDGHSLAVADTGEVFSWGDGDYGKLGHGNSDRQRKPKQIAGLQSFHVIQVACGYKHSAVVTSCGKLFTFXXXXXXXXXXXXXSPKKIPQQVQALKDEHIGQVACGRSHTLALSSDGNRLYTWGDGEFGKLGLGSTTSKPTPNIIDSLRNVGLKKIACGTTFSVVLGNNGLVYTFGHGNFIGNQDAAMRDTTIPQVVRALTGHPIEDIAVGCEYVLAVDRIGNIWSWGANNEGQLGVGNINPQYVPCLVNSLIGKKMGQISAGSTHCAAWSGAISASRPVN---RFNLGTPQHIPPCYSSLFNMDHNLLRDRLNVLWCFSELVSKHWKLLSLNNKDGHQMDCNIFNDGF-------LRSLLTVRTYSLPLARAIRFSANQGRTSVPPITVKRFDTRGLACDPVFKQVAEQVLTVKPNEGLLLCKTWKIKLVNEAADDAGGVFDEVLTHMCMELEERKDIDLLIQTPNTLAEIGYNRDLLTINPSKNCLESLKLYKFLGILMGVSIRTKRPLNLHLSPSVWKQLVGIPLTLDDVEENDALFAQNIKMLRTIIH-QSSNEAQSNKDDTIPLLTYVCQSSDGRTIPLVVDGHNTNLRKRDCSAYIRKAVNYRLNEMSLQIKYIQEGLTSVIPLSILSLMTGQKLELLVCGTRHIDVESLKKIVRYREITAEDEQVKWLWEILVSFSKDELVNFLRFISGRSRLPEKLSDLPHKFQIVGADKPRDGLPTAQTCFFVLRLPPYSSKTTMAQKLRYAINNCRAIDTDNYMLEQN 3162
++ Q+ YE+ LV+S YMQ L ++AV L QL+ +PP+P F +TI + AL + P F V LE V + DNS W D+QI+SW S P+DW +Y WG+G HGQLAE + P + + + ++CGQNCTF++Q NGTV ACGEGSYGRLGQG SDD T I+ LQG+V+ QL TS G DGHS+A+ ++GEVFSWGDGDYGKLGHGNSDRQR+P+QI LQ V+Q++CG+KHSAVVTS GKLFTFG G+ G LG G S KK+P++V AL+ IGQVACG +HTLA+S+DG+ ++ +GDG++GKLGLG++T+K +P ID L +G+KK+ACGT FSV L +G VYTFG IG + R+ PQ + L G IED+AVG E+ LA+ G++++WG+N+EGQLG+G+ N P LV L GK + QISAG H AAW+ R LG P +PP Y +L + + +R RL +L+ FS+L+ W+LL+L+ + Q + +N G LR LL R Y+LP+ R+I + QG+ P ITVKR TRG C P+F Q+A QV+ + ++ L + WK+KLV E ADDAGGVFD+ +T MC ELE +DLLI +PN AE+GYNRD NPS E L +KFLGILMGV+IRTK+PL+LHL+P VWKQL +PLTL+D+EE D L+ Q L +I+H + S + + + IPL ++V QS+DG+ +P++ G++ L + Y+ +A+ YRL+EM Q+ ++EG++ ++P+ +LSL+T ++LE +VCG I VE LKK+VRYRE+ + + V+W W L FS +E V F+RF+SGRSRLP +D+ +FQI+ D+P D LPT+QTCFF LRLPPYSS+ MA++LRYAINNCR+ID DNYML +N
Sbjct: 3860 MLQEQYAYEKPHVVCGDQLVHSPYMQCLASLAVGLHLDQLLCNPPVPPHHQNCLPDPASWNPNEWAWLECFSTTIKAAEALTNGAQFPESFTVPDLEPVPEDELVFLMDNSKWINGMDEQIMSWATSRPEDWHLGGKCDVYLWGAGRHGQLAEAGRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLVTGLQGKNVRQISAGRCHSAAWTAPPVPPRAPGVSVPLQLGLPDTVPPQYGALREVSIHTVRARLRLLYHFSDLMYSSWRLLNLSPNN--QNSTSHYNAGTWGIVQGQLRPLLAPRVYTLPMVRSIGKTMVQGKNYGPQITVKRISTRGRKCKPIFVQIARQVVKLNASDLRLPSRAWKVKLVGEGADDAGGVFDDTITEMCQELET-GIVDLLIPSPNATAEVGYNRDRFLFNPSACLDEHLMQFKFLGILMGVAIRTKKPLDLHLAPLVWKQLCCVPLTLEDLEEVDLLYVQT---LNSILHIEDSGITEESFHEMIPLDSFVGQSADGKMVPIIPGGNSIPLTFSNRKEYVERAIEYRLHEMDRQVAAVREGMSWIVPVPLLSLLTAKQLEQMVCGMPEISVEVLKKVVRYREVDEQHQLVQWFWHTLEEFSNEERVLFMRFVSGRSRLPANTADISQRFQIMKVDRPYDSLPTSQTCFFQLRLPPYSSQLVMAERLRYAINNCRSIDMDNYMLSRN 4850 HSP 2 Score: 262.307 bits (669), Expect = 8.432e-71 Identity = 152/376 (40.43%), Postives = 234/376 (62.23%), Query Frame = 1
Query: 604 PKISQS--IYAWGSGCHGQLAELKLGR-LEPDLVTTITSVRSIVCGQNCTFILQTNGTVKACGEGSYGRLGQGTSDDEPTPTTIAELQGYVIVQLATSLGGDGHSLAVADTGEVFSWGDGDYGKLGHGNSDRQRKPKQIAG-LQSFHVIQVACGYKHSAVVTSCGKLFTFXXXXXXXXXXXXXSPKKIPQQVQALKDEHIGQVACGRSHTLALSSDGNRLYTWGDGEFGKLGLGSTTSKPTPNIIDSLRNVGLKKIACGTTFSVVLGNNGLVYTFGHGNFIG---NQDAAMRDTTIPQVVRALTGHPIEDIAVGCEYVLAVDRIGNIWSWGANNEGQLGVGN-INPQYVPCLVNSLIGKKMGQISAGSTHCAAWSG 1707
P +S++ +Y WGS QL E + L+P L + + ++I GQ CTF++ T+G+V+ACG+GSYGRLG G S+++ T + I ++++S G DGH+LA GEVFSWGDGDYGKLGHGNS Q+ PK I G LQ V+ V+ GY+HSA VT G+L+T+G+G+ G LG G ++ + IP V+ + + +G+V+CG SHT+ALS DG ++++G G+ GKLG G T P +I++L+ + ++K+ G+ S+ L + G VY +G G +G ++ A+R P+++ L I D+++G + LA+ +++WG N+ GQ G GN P P V+ L G + QISAG++H AW+
Sbjct: 366 PIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALR----PKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTA 735 HSP 3 Score: 103.99 bits (258), Expect = 4.710e-22 Identity = 90/328 (27.44%), Postives = 153/328 (46.65%), Query Frame = 1
Query: 901 GHSLAVADTGEVFSWGD--------------------------------------------------GDYGKLGHGNSDRQRKPKQIAGLQSFHVIQVACGYK----HSAVVTSCGKLFTFXXXXXXXXXXXXXSPKKIPQQVQA-LKDEHIGQVACGRSHTLALSSDGNRLYTWGDGEFGKLGLGSTTSKPTPNIIDSLRNVGLKKIACGTTFSVVLGNNG-LVYTFGHGNFIGNQDAAMRDTT---IPQVVRALTGHPIEDIAVGCEYVLAVDRIGNIWSWGANNEGQLGVGNINPQYV-PCLVNSLIGKKMGQISAGSTHCAAWS 1704
G + V++T EV+ WG G YG+LG G+S+ Q K++ + I+ K H+ T+ G++F++G G+ G LG G +S +K P+ +Q L+ + + V+ G H+ A++ DG LYTWG+G+FG+LG G + S+ P ++ + NVG +++CG++ ++ L +G V++FG G+ N DT P+V+ AL G I + G + LA+ G +++WG LG G+ + P L+ L ++ +S G +HC A S
Sbjct: 363 GDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDGSVRACGKGSYGRLGLGDSNNQSTLKKLT-FEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGE-LYTWGEGDFGRLGHGDSNSRNIPTLVKDISNVG--EVSCGSSHTIALSKDGRTVWSFGGGD---NGKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALS 681 The following BLAST results are available for this feature:
BLAST of TCONS_00023445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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