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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023453 ID=TCONS_00023453|Name=TCONS_00023453|organism=Clytia hemisphaerica|type=transcript|length=1368bp
AACATAGTTGTTCTACACAtgttaaataaaaacaacagTTGTGAAGGTAA
ATTGTGACAATGTCTTCTAAAAGAACTAAAGACCAACATTTGGTTGAAAA
AGTgaacaaactgaaagaaaagcaaaaccAATGGATGAAGGAGAGAGAAG
ataataaaaatcaaaagaaatttgttCACTCTAGTTTGCGTTCTACAAGC
TCAAGTGTGAAACAAAGTACACAAGATGTTATGAAAAAGTCTGATACAAT
GGCTTGGGCGACAAGTAATTCAAATTATAATGGATTTGTTGTTAGAAACG
GTTCTGGAACTTCTCGGAGTCGACCAGATTCATCACGTACACCAtccaac
aaaaaaacaaaaacctttacTCACAGTTCTCTTAAGAAACAAACTTCTTC
TAAACCCTTATCAGCCAAATCATCAAATTTCACACACAGTAATAACAAAG
AACTTTCCAAAGAAGAGCTTGTTGACAATCcagatgaagaaaaaaattca
actttggaATCCGATGAGTCTCTTTCAACATCATTCACAGAGCACATGAC
AAATCTAAAACTGGACCAATACGACAGTACCAAATATAATAACAACAAAC
NcgaagaaaaaaatttaactttggAATCCGATGAGTCTCTTTCAACATCA
TTCACAGAGCACATGACAAATCTAAAACTGGACCAATACGACAGTACCAA
ATATAATAACAACAAACCGCAAAAGAAAATGGAAGGAATTAAGTATATGG
ATAATCATTTTTGTGCCTCGTGTAAACAAGTTATGGTGACTGAAGACCGT
AAACCTGTCATGGTGTTCCCTTGTGGGCATTCTTTTTGTGCTAAATGTCT
TTCTGGGAAGCGTCAATGTCTACAGTGTGGATGTGACATTATTTCCATAA
AAACCAATGATTCTTTATTCATGATCATACAAGAGTTTAAGAGGAAAAAT
GAGAAGGAAGAACTTGAAATGAAGGAAAAACAGATCAGGAGCTACATTGA
TGAGTATAAGAATTTGAACACAAGGATCAATATNGATTCTTTATTCATGA
TCATACAACAGTTTAAGAGGAAAACTGAGAAGGAAGAActtgaaatgaaa
gaaaagcAGATCAGGAGCTACATTGATGAGTACAAGAATTTGAACACAAG
GATCAATATTATGAGaggtaaaacattttttattttcatagccTTGAAGT
GGTGCTAGTTCtcttaaaatgaatttttgtttataatctTCCTTTAATTT
ACATTGCAATATGTATAGAGTTAACAGACCttgtagtagggggaaatttg
ttcgtttttttgaggtcgctcgatttttttagtcaaagcacttgttatac
atttttggaaagctaagg Run BLAST on NCBI protein sequence of TCONS_00023453-protein >TCONS_00023453-protein ID=TCONS_00023453-protein|Name=TCONS_00023453-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MSSKRTKDQHLVEKVNKLKEKQNQWMKEREDNKNQKKFVHSSLRSTSSSV
KQSTQDVMKKSDTMAWATSNSNYNGFVVRNGSGTSRSRPDSSRTPSNKKT
KTFTHSSLKKQTSSKPLSAKSSNFTHSNNKELSKEELVDNPDEEKNSTLE
SDESLSTSFTEHMTNLKLDQYDSTKYNNNKXEEKNLTLESDESLSTSFTE
HMTNLKLDQYDSTKYNNNKPQKKMEGIKYMDNHFCASCKQVMVTEDRKPV
MVFPCGHSFCAKCLSGKRQCLQCGCDIISIKTNDSLFMIIQEFKRKNEKE
ELEMKEKQIRSYIDEYKNLNTRINXDSLFMIIQQFKRKTEKEELEMKEKQ
IRSYIDEYKNLNTRINIMRGKTFFIFIALKWC Run BLAST on NCBI transcript from alignment at sc0000454:258041..263647+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023453 ID=TCONS_00023453|Name=TCONS_00023453|organism=Clytia hemisphaerica|type=transcript|length=5607bp|location=Sequence derived from alignment at sc0000454:258041..263647+ (Clytia hemisphaerica)
AACATAGTTGTTCTACACAtgttaaataaaaacaacagTTGTGAAGTAAG
TTTTGTAGTTTTTGCNCCTCATTTGATGTTGGGGTTTATCTAGGGTAATA
GACCATGGCCAGGTACctcaaaacgtttcactttttttcaaaatgtcggt
gaataaacttttgatatctttcttggtCAATTTGAAGNGTTTGTCCCCCT
TCCTATTGCAATTGTCATTAGGTAATACTTGGACCCAAAActtttatcag
gctggggggtCCTTGTtttcaggggggacctaaatttggcaGGGGGGAAC
TAGAATCTAATCGCGGAACTATGTAAGTAGGATTTCctgtcagtcaggca
catcctggcatgcgcaaatgaacggggtatttttcacttgtgattggtgg
caaatgcaacgaaactgccgacgcaccggactgtccggtggcaaaaagta
tcctttcgctacaccggacgcaataagtccggtgtcagtccggtgttgca
tacagggaattctggacgccggacatttacgaaacaaaaaattaagaaac
accggatgcaccggactggtcatgtccagtgttttgattgtccggtgtag
cgactccagaagtcatgcaactttcgttgacgtcaaaccaaatgtttcat
ttttccgtgaactttgaacccttcaaactttttttctatgtatgcNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNccagcggtatataacactgtggacacgggctagac
ggcaaattggtaaaatgccgaacgttttgcaacattttgaaaattgtttg
ccgacaggagaaaaaaaaggtGCAACTATCGCtgaacaaatgtttctgga
agaggaggaaaatgtattttgaaggctgaaactttgtatgtttatcagaa
aaagggtgaggaattcaaaaatcacattcgctaattttagttctttcatt
ttcatgtagtttttttcactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNccttttttgactcatttcaaccttttccaagctaattttcttcaa
aaacaaaaataaaacaatgcaatgtcttcttttttcaaaaaaaggtatat
ctttcattattttgataaatatactaaataatttacaaatatttttatat
aataatattctaacaccatcaaagaattctccctctaaatttcaggtctc
tagctacactagaaaaagagatatgcaaaattgaagaagtatgactggaa
aatttcttttttttcttttttgacaaatttttcgaatttttccaagctat
tttcctaaccttttttttgacatttttagtcaaatttttgacactaaaat
ttaaatatctttacaaccacttatcctcttgaggcctatgacccctcatt
ttctttctttttcaaagctctacaagataggataggttttgaaaaaaaat
tgaaatttgaaaaatcttctggagttgctatccggtggaaaaaatatcct
tctccgacaccggacatccgacttccttaagtccagtgtagagattgtcc
ggtggtaaaaaaaattctcattttacaccagactttcgagtgtccggtgt
tcgttaagtccggtgcgtcggcagggtcctcaaatgcaaggggtcgaaaa
caaaagtgatgtaatagtgctgaataccccacgcaattgaatcggatttg
aaatattttgcttcattttgaagaactaaatagatgaaattttttttcca
tgggacaattttttcttcgaagattgaagaaacttttaacaaaaaaataa
agttcccagctTTCTACCTTTTTTCccgttttcagtttgaagttcatttt
tattcattttcacactTTTAGCCTGAGATGTCCTATCTCATTTGCAGTGG
GTGACGAaaaccccatgcaaatgctcaccccgttcatttgccaggatgtg
cctgactgcctGTCAAACCACCACGGTAGAGTAGAGGTATGTCATGGCCC
ATGCTGCTAAAAGGATTTTTAATAttgcagggctgcaaataatattttta
gtcaatcagACATCATCTGATCATGTCCGACTGAAATGAAATCCTGTCAA
AATCCTGTtggtcattcagtgtatatttttcataaaattgtatATACAGT
CTTGATTGAttaaagttatgaagaaaagtagataaaaaagCGACCTTGTG
GAACAACTCGTTGCTGTAACAGGGAAATTGATTCGATagggcggtcatcg
aaaaattgttttatttgcatcacccgcccgcatcaaattttccgctgatt
ttccggtgccgaaatgcggaaaaaaatctgggaaaagcaatttgttcttt
taaagtatagcttttttctcaattgctctgacgaccatcgaaaaattgtt
ttgctcgcgttaccacccgcccctgagttactggcgtgattaaaaaaaac
ccgggaatgtttttgaccgcccgttcgcccgcatgcatttttaacacccg
ttgcgacgcgaacagagcattttttcgatgaccgcctaatagtgatctta
gaaacattctttaaagttacaaagaaagtgAGTTGATCCAGgtgtagtta
atcgatataatcgataatcttgagtaagcaataaataatcgataagtaat
cgatggattagatatcgattaaccgatagaatcgatataggtaatcgata
ctcaagattttttcaaagctcgattatttatttatcgatcaattttgtca
tcgattgtttatcaattatagatcgattatacttcgattaaattaagtat
cgattaaaaatcgatcggctatcgatcacagcttttgatcgattacatat
cgaGTAATGAAAATAAGTAGTTTTTGGaacaatttttcataaattttcag
aattttcagaaattgaccAAATCCCCTATTGTTTTTCGAGGGCATTTCAA
TGATATTAGTGTTTTTGGGTTATAGCAGGTTATAGTGAACTCCCAAGGGT
TTTTGGTTGTGACATCAGTTCTTTTATCCATGAAAAAATCTGCTAGCCCT
CATTTGATTaaccttttcaaaaaagtttttaaatattcttcTTTCGAATg
agccaaaaaaaaatcaatctgGAAATTGTTGTCACAGGTCCTAAATAAAA
GATACTATCTATTTGGTAATAGAATATTTCTCTCTCTAAAAGAACTTTTG
AACTTTGTGCAGTGCTAGATAATGAAGAATACTTTTTTAGTTTAGCTTGT
TAATGATTTCTAGATCTGCTAAGAAACTTAACCTGTCGATATTTTCACGC
ATCATAGAACTTTCATAGGGTATAACGGATGTACATAACGCAAAAGCTTA
CTGTTAAGAGCCTTTAAAAGCTGTGTTTCATCGTTATTTGGTAGATATTT
AAAAAGATATTGCTACAAATATATTTGCAATTACATTGGGACTGACCCAG
GGTTTGAAATATAAGGATTTCTTGCTTTGTATGTTTCGTGTTTGGTAATT
CTTAggttatttttttttcgttgtcACTCGACTAAAGGGCATTATTAtat
aatacaccgtttaggagtctccaccgtgttccaccgtgaaagcggtaggt
aaaaatgcccactttagtactgtggaaggttagaggaatgtaaatattgt
caattttttctttcctttaaagagaatgatttagatatttgaacatgata
tcaatgatgattttatggatctctcctgaaaatttcacaaaaattcatct
agaggaaaagaagttatgattaaaaaggagttctttacctaccgtttctc
TGCTAGGTTTCCTTATTGAAAAATGCTCTGCACAGGGCATCCTAAGATTT
TTGTAAGTAATAATACCTATATCATTTTATCAAGGGTAAATTGTGACAAT
GTCTTCTAAAAGAACTAAAGACCAACATTTGGTTGAAAAAGTgaacaaac
tgaaagaaaagcaaaaccAATGGATGAAGGAGAGAGAAGataataaaaat
caaaagaaatttgttCACTCTAGTTTGCGTTCTACAAGCTCAAGTGTGAA
ACAAAGTACACAAGATGTTATGAAAAAGTCTGATACAATGGCTTGGGCGA
CAAGTAATTCAAATTATAATGGATTTGTTGTTAGAAACGGTTCTGGAACT
TCTCGGAGTCGACCAGATTCATCACGTACACCAtccaacaaaaaaacaaa
aacctttacTCACAGTTCTCTTAAGAAACAAACTTCTTCTAAACCCTTAT
CAGCCAAATCATCAAATTTCACACACAGTAATAACAAAGAACTTTCCAAA
GAAGAGCTTGTTGACAATCcagatgaagaaaaaaattcaactttggaATC
CGATGAGTCTCTTTCAACATCATTCACAGAGCACATGACAAATCTAAAAC
TGGACCAATACGACAGTACCAAATATAATAACAACAAACNcgaagaaaaa
aatttaactttggAATCCGATGAGTCTCTTTCAACATCATTCACAGAGCA
CATGACAAATCTAAAACTGGACCAATACGACAGTACCAAATATAATAACA
ACAAACCGCAAAAGAAAATGGAAGGAATTAAGTATATGGATAATCATTTT
TGTGCCTCGTGTAAACAAGTTATGGTGACTGAAGACCGTAAACCTGTCAT
GGTGTTCCCTTGTGGGCATTCTTTTTGTGCTAAATGTCTTTCTGGGAAGC
GTCAATGTCTACAGTGTGGATGTGACATTATTTCCATAAAAACCAATGAT
TCTTTATTCATGATCATACAAGAGTTTAAGAGGAAAAATGAGAAGGAAGA
ACTTGAAATGAAGGAAAAACAGATCAGGAGCTACATTGATGAGTATAAGA
ATTTGAACACAAGGATCAATATNGATTCTTTATTCATGATCATACAACAG
TTTAAGAGGAAAACTGAGAAGGAAGAActtgaaatgaaagaaaagcAGAT
CAGGAGCTACATTGATGAGTACAAGAATTTGAACACAAGGATCAATATTA
TGAGaggtaaaacattttttattttcatagccTTGAAGTGGTGCTAGTTC
tcttaaaatgaatttttgtttataatctTCCTTTAATTTACATTGCAATA
TGTATAGAGTTAACAGACCttgtagtagggggaaatttgttcgttttttt
gaggtcgctcgatttttttagtcaaagcacttgttatacatttttggaaa
gctaagg Coding sequence (CDS) from alignment at sc0000454:258041..263647+ >TCONS_00023453 ID=TCONS_00023453|Name=TCONS_00023453|organism=Clytia hemisphaerica|type=CDS|length=1149bp|location=Sequence derived from alignment at sc0000454:258041..263647+ (Clytia hemisphaerica)
ATGTCTTCTAAAAGAACTAAAGACCAACATTTGGTTGAAAAAGTgaacaa
actgaaagaaaagcaaaaccAATGGATGAAGGAGAGAGAAGataataaaa
atcaaaagaaatttgttCACTCTAGTTTGCGTTCTACAAGCTCAAGTGTG
AAACAAAGTACACAAGATGTTATGAAAAAGTCTGATACAATGGCTTGGGC
GACAAGTAATTCAAATTATAATGGATTTGTTGTTAGAAACGGTTCTGGAA
CTTCTCGGAGTCGACCAGATTCATCACGTACACCAtccaacaaaaaaaca
aaaacctttacTCACAGTTCTCTTAAGAAACAAACTTCTTCTAAACCCTT
ATCAGCCAAATCATCAAATTTCACACACAGTAATAACAAAGAACTTTCCA
AAGAAGAGCTTGTTGACAATCcagatgaagaaaaaaattcaactttggaA
TCCGATGAGTCTCTTTCAACATCATTCACAGAGCACATGACAAATCTAAA
ACTGGACCAATACGACAGTACCAAATATAATAACAACAAACNcgaagaaa
aaaatttaactttggAATCCGATGAGTCTCTTTCAACATCATTCACAGAG
CACATGACAAATCTAAAACTGGACCAATACGACAGTACCAAATATAATAA
CAACAAACCGCAAAAGAAAATGGAAGGAATTAAGTATATGGATAATCATT
TTTGTGCCTCGTGTAAACAAGTTATGGTGACTGAAGACCGTAAACCTGTC
ATGGTGTTCCCTTGTGGGCATTCTTTTTGTGCTAAATGTCTTTCTGGGAA
GCGTCAATGTCTACAGTGTGGATGTGACATTATTTCCATAAAAACCAATG
ATTCTTTATTCATGATCATACAAGAGTTTAAGAGGAAAAATGAGAAGGAA
GAACTTGAAATGAAGGAAAAACAGATCAGGAGCTACATTGATGAGTATAA
GAATTTGAACACAAGGATCAATATNGATTCTTTATTCATGATCATACAAC
AGTTTAAGAGGAAAACTGAGAAGGAAGAActtgaaatgaaagaaaagcAG
ATCAGGAGCTACATTGATGAGTACAAGAATTTGAACACAAGGATCAATAT
TATGAGaggtaaaacattttttattttcatagccTTGAAGTGGTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023453-exon-sc0000454-1491911889:258041..258085 | TCONS_00023453-exon-sc0000454-1491911889:258041..258085 | Clytia hemisphaerica | exon |
| TCONS_00023453-exon-sc0000454-1510915933:258041..258085 | TCONS_00023453-exon-sc0000454-1510915933:258041..258085 | Clytia hemisphaerica | exon |
| TCONS_00023453-exon-sc0000454-1575043694:258041..258085 | TCONS_00023453-exon-sc0000454-1575043694:258041..258085 | Clytia hemisphaerica | exon |
| TCONS_00023453-exon-sc0000454-1491911889:262325..263647 | TCONS_00023453-exon-sc0000454-1491911889:262325..263647 | Clytia hemisphaerica | exon |
| TCONS_00023453-exon-sc0000454-1510915933:262325..263647 | TCONS_00023453-exon-sc0000454-1510915933:262325..263647 | Clytia hemisphaerica | exon |
| TCONS_00023453-exon-sc0000454-1575043694:262325..263647 | TCONS_00023453-exon-sc0000454-1575043694:262325..263647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000454 | supercontig | sc0000454:258041..263647 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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