TCONS_00023477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023477
Unique NameTCONS_00023477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1103

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023477 ID=TCONS_00023477|Name=TCONS_00023477|organism=Clytia hemisphaerica|type=transcript|length=1103bp
ATAGATTCGTACTCTAGAATCCAGTCGTATTGAATTAAAATATATCAATT
TATCATCCGTATTTGattggtgaaaaaaaaaattgtatttccaaaaataa
acactttcaactaaagAAAAGAGAAATAATATTTTCATCTGAAGAAGTTC
AGATTAAAAGTTTTTACGGTCATATTCTCATGATATAATATACAGTCACT
ACAAAGGTAAAAAAGAAATGGCAGAAGCATTTGATCAAATTCCACAAGCT
GATCGCGGATACGATTTCGACCTAGTAAAGAAAGAACAAGGAATTAATTT
CCAATGCTCCATTTGTCATTTAATCTTGCGTGATCCTTACACGACACCGT
GTCATCACGCTTTCTGTCACGTTTGTATCACGCAATGGGGAAATGAATTA
ACAAATGCCAAAAgGCCAACAACATGTCCAAATTGTAACAATGTTTATGA
CCAAAAGCAAattcaccAAGATGGATTCATAGATCGAATGGTGAAAACCA
GTTTAGATGTGAAATGTAAACTACACGAAGTTGGATGTTCATGGCAAGGG
AAAATCATTGACTATCAGGATCATCAAAGGACTTGTGAATATGAGACAAT
ACCGTGTGAAAACGAAGGTTGTTTGGAAATGCAGATGAGAAAAAATTTAC
CGAAACATCAACAGATTTGTGAATATCGCCTTACACAGTGTGGATACTGC
GAACTGAAAAACCCAATCATCCAGATGAAGTACCACCACAAAGAATGCCC
AATGATGAAAGTGATCTGTTTGAACGAAGAATGCAATGTTCAAGTCCTTC
GCAAAGATATCGAAGGTCATTTGTCTCGAGATTGCCTTTATGAAGTGGTT
GGATGCGACTACTTCGACCTCGGTTGTCTAAAAAAAATACAGCGCTGCAA
AATGGAGGAACATCTCAAGGAAAACATTGTTGAACATCAATTGATGATGC
TGAAAGATTACAAAGTAACCAAAGAAAAGCTGATTGAAACTAACAATGat
ttaaaacaagaaaaacttaaaaatgaagAGCTTACTGCAAAATTGGAGAC
GGCAAATGAAAAAATGGAACAATTGGAATATAGAATGGAATTTATATCCG
AAA
Run BLAST on NCBI

protein sequence of TCONS_00023477-protein

>TCONS_00023477-protein ID=TCONS_00023477-protein|Name=TCONS_00023477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MAEAFDQIPQADRGYDFDLVKKEQGINFQCSICHLILRDPYTTPCHHAFC
HVCITQWGNELTNAKRPTTCPNCNNVYDQKQIHQDGFIDRMVKTSLDVKC
KLHEVGCSWQGKIIDYQDHQRTCEYETIPCENEGCLEMQMRKNLPKHQQI
CEYRLTQCGYCELKNPIIQMKYHHKECPMMKVICLNEECNVQVLRKDIEG
HLSRDCLYEVVGCDYFDLGCLKKIQRCKMEEHLKENIVEHQLMMLKDYKV
TKEKLIETNNDLKQEKLKNEELTAKLETANEKMEQLEYRMEFISE
Run BLAST on NCBI

transcript from alignment at sc0000454:175170..181960-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023477 ID=TCONS_00023477|Name=TCONS_00023477|organism=Clytia hemisphaerica|type=transcript|length=6791bp|location=Sequence derived from alignment at sc0000454:175170..181960- (Clytia hemisphaerica)
ATAGATTCGTACTCTAGAATCCAGTCGTATTGAATTAAAATATATCAATT
TATCATCCGTATTTGATTGGTGAAAAAAAAAATTGTATTTCCAAAAATAA
ACACTTTCAACTAAAGAAAAGAGAAATAATATTTTCATCTGAAGAAGTTC
AGATTAAAAGTTTTTACGGTCATATTCTCATGATATAATATACAGTCACT
ACAAAGGTAAAAAAGAAATGGCAGAAGCATTTGATCAAATTCCACAAGCT
GATCGCGGATACGATTTCGACCTAGTAAAGAAAGAACAAGGAATTAATTT
CCAATGCTCCATTTGTCATTTAATCTTGCGTGATCCTTACACGACACCGT
GTCATCACGCTTTCTGTCACGTTTGTATCACGCAATGGGGAAATGAATTA
ACAAATGCCAAAAGGTAAAAAGTTAAATTTTTGATATTAATTTTTTTTTC
TAACGCTATTTTGTTCATTCTGATGTAATTTACGCGAACAGTGTACTCTT
AGGTGCCAAATAAACGGGCACCCCGCTTGTTAATTTTTCGGACCTTATTA
GAACCCCCCGTTTATTAATTTTCANGCAGAAGCATTTGATCAAATTCCAC
AAGCTGATCGCGGATACGATTTCGACCTAGTAAAGAAAGAACAAGGAATT
AATTTCCAATGCTCCATTTGTCATTTAATCTTGCGTGATCCTTACACGAC
ACCGTGTCATCACGCTTTCTGTCACGTTTGTATCACGCAATGGGGAAATG
AATTAACAAATGCCAAAAGGTAAAAAGTTAAATCTTTTATATTAATTTTT
TTTCTAACGCTCTTATGTCCATTCTGATGTAATTTACGCGAACAGTGTAG
GAGCTTTTCGGGTAAAATAGATATATTCTAAAATATTTTTATAGTTTTTG
GTAAAATAGAAACAGTACATGCTTTTTCAAAATGTGTATTTCGACATGGT
GATAGAGAATGTAGGAAGAAAATCCGAAGAAATGATTACGATAGTATTAA
TATGATAACTTGATTTATCTTCTTAGGCCAACAACATGTCCAAATTGTAA
CAATGTTTATGACCAAAAGCAAGTGAGTAATAGTCTCAATATTCTTGCCA
TCGAAGCATTTTGTTAGGGGGGGCGTACGGTTTTTCGGTATTGCGGAAAT
CGACCCTTTTTTCTTCGGAAATTCGGAAATCAGGCAAAATTCCTTCGGTA
TTTCGGAGTTTTGAAATTGTTTCGGTATCGGAAATCCATGAATTTTAGCT
TCGAAATTTCGGTATTGTAAAGTTTTTATCCCTTTTTTTCGGAATTTTGG
GAAATTTGATGAAAAATTAGTCAAAAAGAGGAAAAATACCCAAAAAATTG
GTATCGGAATTGCAAGTATTTTTTTACGGAATTTCGGAAATTTTGGCAAA
ATTATTCGGTATTACGGAAATCGCGAACCCCGTACGCCCCCCCCTTTTGT
TCTTGTGTAGTTTGTTCTTATAAAACACGCGAAGCAGTCATAAAAATTAT
TTATGGAATTGGATGAAAGATAAATTGAAAATTATTTTATAGATTCACCA
AGATGGATTCATAGATCGAATGGTGAAAACCAGTTTAGATGTGAAATGTA
AACTACACGAAGTTGGATGTTCATGGCAAGGGAAAATCATTGACTATCAG
GTCTGCGTTCTTTGACCGGGGGGGGGGGCACTCAAGGTAATCGACCGACC
GTACGTGCAGCCCTTAAGAGTCCTTTTTCCAATAGCGTTGTGGGTCAACC
AAAACCGGGAGGCAATTTTTTATTCGTTGTTAGGATTTTGACGCCTACTT
TAAAAATAAAATATATTTGTAAAAATTACGCGAGCAGAGCGAGGACGAAA
ATCTTTTGGTATATTTTCTATTTTGGCTGTAAACTGTTAATTCTAAGGTG
TAAAAAAGAAAAGGGGCGCCGAAATTAGTAGTGTCAAAGGCGCTTTTTTG
CATCTCTTGTCTTCGGGCCCCCCCCCCCCCCCCCCCCAAAAAAGATCGGC
CACCATGCTACTGTTTGTTAAATAAAAAGCAATTTATATTTAAGGGAGCT
CGTAAACATGAATGGAAAGAGGAAGTAACAATGAAGGAAAATTTGTTCCA
GCCGGTATATAATAATTTTTGCTATTTTCTTTAGGATCATCAAAGGACTT
GTGAATATGAGACAATACCGTGTGAAAACGAAGGTTGTTTGGAAATGCAG
ATGAGAAAAAATTTACCGAAACATCAACAGATTTGTGAATATCGCCTTAC
ACAGTGTGGATACTGCGAACTGAAAAACCCAATCATCCAGATGAAGGTTC
GCAAAACAGGCTTTATTTCGGACGGTTGAAGTAGAGAATTTGTGAGCTGA
GCAAGTCGAAATGTGAGAAAGTGCACTCTAAGGGTGGGAAAAGTGAGAAA
AACGAAGATTTCTGGGAAAAAAAATTGGAAAATCTGACTATTTTTGCCTT
AAAACGGACAAAGATTTTCAAAAAAATGGTCGGTTTTTCACTCACATTTA
CTCAAATTTGGCTAAATATTTTCTGCACTGTAAGCGTCCGATTTTAATTT
CGGGAGATTGAACAAAGACTTTGTACGATATCAATTTGTTATAAATTCAA
ACTCTGTGAGATGAAGAATGTAATGTAATTGAATTTTATTTCATCAAAAT
ATATGTTATTACACCCGTCTCATAGCCTGGGAGGAACTTCCTTCCCCAGT
GGCTGTGGAAATTTTTATCAAAATCCCTATGGGAATAGAAATTTTATTAC
TCCAAGGTCAAAAAGTCCAGTGTGGATGGTTTTGGAGCACAATTCTTTTC
CATTGAATATCAAATAGGAATAAAAACGTCAATTTCCCAATGTGGCTTAA
ATTGTGGACTATTTTTCCAACCGAGAGCAAAATCTTTGCCATACTTTCCA
GTAGAAGTCCCAACGGGTCTGTGACACACAGGGGTGTGATGCTTTTCGAA
CACACTGTGTATTAGCCTTCAGACAATTGACTAATGATTTTTGAAACGAA
ATTTTCAGTACCACCACAAAGAATGCCCAATGATGAAAGTGATCTGTTTG
AACGAAGAATGCAATGTTCAAGTCCTTCGCAAAGATGTAAGTGTTGTTCA
TTGTGTCATGTTAAATTCGAATTTTGTCACCATAATAATAATTCGTTCAT
TTATTCATGTATTCTTTCATTCATTCATTCAAACTGAAATTTCCATTTAG
ATCGAAGGTCATTTGTCTCGAGATTGCCTTTATGAAGTGGTTGGATGCGA
CTACTTCGACCTCGGTTGTCTAAAAAAAGTAAGACAACACTGAAATGTCT
GCTAACAGCGTTGGCAAATAAAGACTAATGAAGGAAGGTGGATTATAGAG
TAGACTTGAGTACGAAACACAGTAACATGGATGTTATCTTATCATTGCGA
TAACTCTTACGGGATAATGCTAGTTAGACTATTAGAATATTCGCCTACGA
TGCTTCAGCTAACGCTTGCCTTATCTCTGGTTTAGGTGGCCCACTTTTCG
CCCCGTCTTTTCTAATTTTGAAATAAAGTGGGCAGAAAGTTTTGGCTATC
TAAAGTCAATGTATTGCCTTCTGTTGACGTCAATTCAACGATTTTTTTTT
CAAGCAAAGATTTCAGTACGCTCGCTTAAGGCCGGTCTCCACTTTCGCGC
GAAATGGGCGACAGTTTTTTTCTTAACCTTTTTTGCCTGAAGAAAAGATC
ACGTCATAAAAAAGTTTCAAGCGAAGAAAAAAAAAGTTGAAGGAAGTTCT
TCGTTTTTCATCCGTTACCTTCATTTTTCAACCGACCAATGACCTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTT
TTTTATTTTTCCTCCAATTTAGCGCGCCTTTACAAAGTTTTTCCTCTAAT
TATTAGTACGATAAAAAGATTCCAGATTCAGAGCAATTTATATCCTCCTA
TTATTAGTGCGACACCTCCAAAATAATTATTTTTTTGGTCGTATTAAATT
AGAGAAATTACGGTATATCAGTCTACAAAATAGTTAGTTATATTTAATTT
TCCCAAATTTCTCACTGTTTTCAGATACAGCGCTGCAAAATGGAGGAACA
TCTCAAGGAAAACATTGTTGAACATCAATTGATGATGCTGAAAGATTACA
AAGTAACCAAAGAAAAGCTGATTGAAACTAACAATGATTTAAAACAAGAA
AAACTTAAAAATGAAGAGCTTACTGCAAAATTGGAGACGGCAAATGAAAA
AATGGAACAATTGGAATATAGAATGGAATTTATATCCGAAA

Coding sequence (CDS) from alignment at sc0000454:175170..181960-

>TCONS_00023477 ID=TCONS_00023477|Name=TCONS_00023477|organism=Clytia hemisphaerica|type=CDS|length=6195bp|location=Sequence derived from alignment at sc0000454:175170..181960- (Clytia hemisphaerica)
ATACAGCGCTGCAAAATGGAGGAACATCTCAAGGAAAACATTGTTGAACA
TCAATTGATGATGCTGAAAGATTACAAAGTAACCAAAGAAAAGCTGATTG
AAACTAACAATGATTTAAAACAAGAAAAACTTAAAAATGAAGAGCTTACT
GCAAAATTGGAGACGGCAAATGAAAAAATGGAACAATTGGAATATAGAAT
GGAATTTATATCCGAAATCGAAGGTCATTTGTCTCGAGATTGCCTTTATG
AAGTGGTTGGATGCGACTACTTCGACCTCGGTTGTCTAAAAAAATACCAC
CACAAAGAATGCCCAATGATGAAAGTGATCTGTTTGAACGAAGAATGCAA
TGTTCAAGTCCTTCGCAAAGATGATCATCAAAGGACTTGTGAATATGAGA
CAATACCGTGTGAAAACGAAGGTTGTTTGGAAATGCAGATGAGAAAAAAT
TTACCGAAACATCAACAGATTTGTGAATATCGCCTTACACAGTGTGGATA
CTGCGAACTGAAAAACCCAATCATCCAGATGAAGATTCACCAAGATGGAT
TCATAGATCGAATGGTGAAAACCAGTTTAGATGTGAAATGTAAACTACAC
GAAGTTGGATGTTCATGGCAAGGGAAAATCATTGACTATCAGGCCAACAA
CATGTCCAAATTGTAACAATGTTTATGACCAAAAGCAAATGGCAGAAGCA
TTTGATCAAATTCCACAAGCTGATCGCGGATACGATTTCGACCTAGTAAA
GAAAGAACAAGGAATTAATTTCCAATGCTCCATTTGTCATTTAATCTTGC
GTGATCCTTACACGACACCGTGTCATCACGCTTTCTGTCACGTTTGTATC
ACGCAATGGGGAAATGAATTAACAAATGCCAAAAGATACAGCGCTGCAAA
ATGGAGGAACATCTCAAGGAAAACATTGTTGAACATCAATTGATGATGCT
GAAAGATTACAAAGTAACCAAAGAAAAGCTGATTGAAACTAACAATGATT
TAAAACAAGAAAAACTTAAAAATGAAGAGCTTACTGCAAAATTGGAGACG
GCAAATGAAAAAATGGAACAATTGGAATATAGAATGGAATTTATATCCGA
AATCGAAGGTCATTTGTCTCGAGATTGCCTTTATGAAGTGGTTGGATGCG
ACTACTTCGACCTCGGTTGTCTAAAAAAATACCACCACAAAGAATGCCCA
ATGATGAAAGTGATCTGTTTGAACGAAGAATGCAATGTTCAAGTCCTTCG
CAAAGATGATCATCAAAGGACTTGTGAATATGAGACAATACCGTGTGAAA
ACGAAGGTTGTTTGGAAATGCAGATGAGAAAAAATTTACCGAAACATCAA
CAGATTTGTGAATATCGCCTTACACAGTGTGGATACTGCGAACTGAAAAA
CCCAATCATCCAGATGAAGATTCACCAAGATGGATTCATAGATCGAATGG
TGAAAACCAGTTTAGATGTGAAATGTAAACTACACGAAGTTGGATGTTCA
TGGCAAGGGAAAATCATTGACTATCAGGCCAACAACATGTCCAAATTGTA
ACAATGTTTATGACCAAAAGCAAATGGCAGAAGCATTTGATCAAATTCCA
CAAGCTGATCGCGGATACGATTTCGACCTAGTAAAGAAAGAACAAGGAAT
TAATTTCCAATGCTCCATTTGTCATTTAATCTTGCGTGATCCTTACACGA
CACCGTGTCATCACGCTTTCTGTCACGTTTGTATCACGCAATGGGGAAAT
GAATTAACAAATGCCAAAAGATACAGCGCTGCAAAATGGAGGAACATCTC
AAGGAAAACATTGTTGAACATCAATTGATGATGCTGAAAGATTACAAAGT
AACCAAAGAAAAGCTGATTGAAACTAACAATGATTTAAAACAAGAAAAAC
TTAAAAATGAAGAGCTTACTGCAAAATTGGAGACGGCAAATGAAAAAATG
GAACAATTGGAATATAGAATGGAATTTATATCCGAAATCGAAGGTCATTT
GTCTCGAGATTGCCTTTATGAAGTGGTTGGATGCGACTACTTCGACCTCG
GTTGTCTAAAAAAATACCACCACAAAGAATGCCCAATGATGAAAGTGATC
TGTTTGAACGAAGAATGCAATGTTCAAGTCCTTCGCAAAGATGATCATCA
AAGGACTTGTGAATATGAGACAATACCGTGTGAAAACGAAGGTTGTTTGG
AAATGCAGATGAGAAAAAATTTACCGAAACATCAACAGATTTGTGAATAT
CGCCTTACACAGTGTGGATACTGCGAACTGAAAAACCCAATCATCCAGAT
GAAGATTCACCAAGATGGATTCATAGATCGAATGGTGAAAACCAGTTTAG
ATGTGAAATGTAAACTACACGAAGTTGGATGTTCATGGCAAGGGAAAATC
ATTGACTATCAGGCCAACAACATGTCCAAATTGTAACAATGTTTATGACC
AAAAGCAAATGGCAGAAGCATTTGATCAAATTCCACAAGCTGATCGCGGA
TACGATTTCGACCTAGTAAAGAAAGAACAAGGAATTAATTTCCAATGCTC
CATTTGTCATTTAATCTTGCGTGATCCTTACACGACACCGTGTCATCACG
CTTTCTGTCACGTTTGTATCACGCAATGGGGAAATGAATTAACAAATGCC
AAAAGATACAGCGCTGCAAAATGGAGGAACATCTCAAGGAAAACATTGTT
GAACATCAATTGATGATGCTGAAAGATTACAAAGTAACCAAAGAAAAGCT
GATTGAAACTAACAATGATTTAAAACAAGAAAAACTTAAAAATGAAGAGC
TTACTGCAAAATTGGAGACGGCAAATGAAAAAATGGAACAATTGGAATAT
AGAATGGAATTTATATCCGAAATCGAAGGTCATTTGTCTCGAGATTGCCT
TTATGAAGTGGTTGGATGCGACTACTTCGACCTCGGTTGTCTAAAAAAAT
ACCACCACAAAGAATGCCCAATGATGAAAGTGATCTGTTTGAACGAAGAA
TGCAATGTTCAAGTCCTTCGCAAAGATGATCATCAAAGGACTTGTGAATA
TGAGACAATACCGTGTGAAAACGAAGGTTGTTTGGAAATGCAGATGAGAA
AAAATTTACCGAAACATCAACAGATTTGTGAATATCGCCTTACACAGTGT
GGATACTGCGAACTGAAAAACCCAATCATCCAGATGAAGATTCACCAAGA
TGGATTCATAGATCGAATGGTGAAAACCAGTTTAGATGTGAAATGTAAAC
TACACGAAGTTGGATGTTCATGGCAAGGGAAAATCATTGACTATCAGGCC
AACAACATGTCCAAATTGTAACAATGTTTATGACCAAAAGCAAATGGCAG
AAGCATTTGATCAAATTCCACAAGCTGATCGCGGATACGATTTCGACCTA
GTAAAGAAAGAACAAGGAATTAATTTCCAATGCTCCATTTGTCATTTAAT
CTTGCGTGATCCTTACACGACACCGTGTCATCACGCTTTCTGTCACGTTT
GTATCACGCAATGGGGAAATGAATTAACAAATGCCAAAAGATACAGCGCT
GCAAAATGGAGGAACATCTCAAGGAAAACATTGTTGAACATCAATTGATG
ATGCTGAAAGATTACAAAGTAACCAAAGAAAAGCTGATTGAAACTAACAA
TGATTTAAAACAAGAAAAACTTAAAAATGAAGAGCTTACTGCAAAATTGG
AGACGGCAAATGAAAAAATGGAACAATTGGAATATAGAATGGAATTTATA
TCCGAAATCGAAGGTCATTTGTCTCGAGATTGCCTTTATGAAGTGGTTGG
ATGCGACTACTTCGACCTCGGTTGTCTAAAAAAATACCACCACAAAGAAT
GCCCAATGATGAAAGTGATCTGTTTGAACGAAGAATGCAATGTTCAAGTC
CTTCGCAAAGATGATCATCAAAGGACTTGTGAATATGAGACAATACCGTG
TGAAAACGAAGGTTGTTTGGAAATGCAGATGAGAAAAAATTTACCGAAAC
ATCAACAGATTTGTGAATATCGCCTTACACAGTGTGGATACTGCGAACTG
AAAAACCCAATCATCCAGATGAAGATTCACCAAGATGGATTCATAGATCG
AATGGTGAAAACCAGTTTAGATGTGAAATGTAAACTACACGAAGTTGGAT
GTTCATGGCAAGGGAAAATCATTGACTATCAGGCCAACAACATGTCCAAA
TTGTAACAATGTTTATGACCAAAAGCAAATGGCAGAAGCATTTGATCAAA
TTCCACAAGCTGATCGCGGATACGATTTCGACCTAGTAAAGAAAGAACAA
GGAATTAATTTCCAATGCTCCATTTGTCATTTAATCTTGCGTGATCCTTA
CACGACACCGTGTCATCACGCTTTCTGTCACGTTTGTATCACGCAATGGG
GAAATGAATTAACAAATGCCAAAAGATACAGCGCTGCAAAATGGAGGAAC
ATCTCAAGGAAAACATTGTTGAACATCAATTGATGATGCTGAAAGATTAC
AAAGTAACCAAAGAAAAGCTGATTGAAACTAACAATGATTTAAAACAAGA
AAAACTTAAAAATGAAGAGCTTACTGCAAAATTGGAGACGGCAAATGAAA
AAATGGAACAATTGGAATATAGAATGGAATTTATATCCGAAATCGAAGGT
CATTTGTCTCGAGATTGCCTTTATGAAGTGGTTGGATGCGACTACTTCGA
CCTCGGTTGTCTAAAAAAATACCACCACAAAGAATGCCCAATGATGAAAG
TGATCTGTTTGAACGAAGAATGCAATGTTCAAGTCCTTCGCAAAGATGAT
CATCAAAGGACTTGTGAATATGAGACAATACCGTGTGAAAACGAAGGTTG
TTTGGAAATGCAGATGAGAAAAAATTTACCGAAACATCAACAGATTTGTG
AATATCGCCTTACACAGTGTGGATACTGCGAACTGAAAAACCCAATCATC
CAGATGAAGATTCACCAAGATGGATTCATAGATCGAATGGTGAAAACCAG
TTTAGATGTGAAATGTAAACTACACGAAGTTGGATGTTCATGGCAAGGGA
AAATCATTGACTATCAGGCCAACAACATGTCCAAATTGTAACAATGTTTA
TGACCAAAAGCAAATGGCAGAAGCATTTGATCAAATTCCACAAGCTGATC
GCGGATACGATTTCGACCTAGTAAAGAAAGAACAAGGAATTAATTTCCAA
TGCTCCATTTGTCATTTAATCTTGCGTGATCCTTACACGACACCGTGTCA
TCACGCTTTCTGTCACGTTTGTATCACGCAATGGGGAAATGAATTAACAA
ATGCCAAAAGATACAGCGCTGCAAAATGGAGGAACATCTCAAGGAAAACA
TTGTTGAACATCAATTGATGATGCTGAAAGATTACAAAGTAACCAAAGAA
AAGCTGATTGAAACTAACAATGATTTAAAACAAGAAAAACTTAAAAATGA
AGAGCTTACTGCAAAATTGGAGACGGCAAATGAAAAAATGGAACAATTGG
AATATAGAATGGAATTTATATCCGAAATCGAAGGTCATTTGTCTCGAGAT
TGCCTTTATGAAGTGGTTGGATGCGACTACTTCGACCTCGGTTGTCTAAA
AAAATACCACCACAAAGAATGCCCAATGATGAAAGTGATCTGTTTGAACG
AAGAATGCAATGTTCAAGTCCTTCGCAAAGATGATCATCAAAGGACTTGT
GAATATGAGACAATACCGTGTGAAAACGAAGGTTGTTTGGAAATGCAGAT
GAGAAAAAATTTACCGAAACATCAACAGATTTGTGAATATCGCCTTACAC
AGTGTGGATACTGCGAACTGAAAAACCCAATCATCCAGATGAAGATTCAC
CAAGATGGATTCATAGATCGAATGGTGAAAACCAGTTTAGATGTGAAATG
TAAACTACACGAAGTTGGATGTTCATGGCAAGGGAAAATCATTGACTATC
AGGCCAACAACATGTCCAAATTGTAACAATGTTTATGACCAAAAGCAAAT
GGCAGAAGCATTTGATCAAATTCCACAAGCTGATCGCGGATACGATTTCG
ACCTAGTAAAGAAAGAACAAGGAATTAATTTCCAATGCTCCATTTGTCAT
TTAATCTTGCGTGATCCTTACACGACACCGTGTCATCACGCTTTCTGTCA
CGTTTGTATCACGCAATGGGGAAATGAATTAACAAATGCCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013196XLOC_013196Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023477-proteinTCONS_00023477-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023477-exon-sc0000454-1575043694:181547..181960TCONS_00023477-exon-sc0000454-1575043694:181547..181960Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1575043694:180889..180934TCONS_00023477-exon-sc0000454-1575043694:180889..180934Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1575043694:180311..180418TCONS_00023477-exon-sc0000454-1575043694:180311..180418Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1575043694:179665..179826TCONS_00023477-exon-sc0000454-1575043694:179665..179826Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1575043694:178875..178952TCONS_00023477-exon-sc0000454-1575043694:178875..178952Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1575043694:178683..178760TCONS_00023477-exon-sc0000454-1575043694:178683..178760Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1575043694:175170..175386TCONS_00023477-exon-sc0000454-1575043694:175170..175386Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1510915933:181547..181960TCONS_00023477-exon-sc0000454-1510915933:181547..181960Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1510915933:180889..180934TCONS_00023477-exon-sc0000454-1510915933:180889..180934Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1510915933:180311..180418TCONS_00023477-exon-sc0000454-1510915933:180311..180418Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1510915933:179665..179826TCONS_00023477-exon-sc0000454-1510915933:179665..179826Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1510915933:178875..178952TCONS_00023477-exon-sc0000454-1510915933:178875..178952Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1510915933:178683..178760TCONS_00023477-exon-sc0000454-1510915933:178683..178760Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1510915933:175170..175386TCONS_00023477-exon-sc0000454-1510915933:175170..175386Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1491911889:181547..181960TCONS_00023477-exon-sc0000454-1491911889:181547..181960Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1491911889:180889..180934TCONS_00023477-exon-sc0000454-1491911889:180889..180934Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1491911889:180311..180418TCONS_00023477-exon-sc0000454-1491911889:180311..180418Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1491911889:179665..179826TCONS_00023477-exon-sc0000454-1491911889:179665..179826Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1491911889:178875..178952TCONS_00023477-exon-sc0000454-1491911889:178875..178952Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1491911889:178683..178760TCONS_00023477-exon-sc0000454-1491911889:178683..178760Clytia hemisphaericaexon
TCONS_00023477-exon-sc0000454-1491911889:175170..175386TCONS_00023477-exon-sc0000454-1491911889:175170..175386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000454supercontigsc0000454:175170..181960 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.198421	0.0773968	0	0.131879	0	0.0845789	0	0.226534	0.396504	0.0982269	0.286024	0.211436	2.37186	1.35949	0.587798	0.573452	0.282578	0.506859	3.00108	5.64341	0.818878	0.729887	0.215799	0.751377	1.38462	2.74003	0	0.275424	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00023477 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.913e-22
Identity = 77/291 (26.46%), Postives = 129/291 (44.33%), Query Frame = 2 
Query:  254 RGYDFDLVKKEQGINFQCSICHLILRDPYTTPCHHAFCHVCITQWGNELTNAKRPTTCPNCNNVYDQKQIHQDGFIDRMVKTSLDVKCKLHEVGCSWQGKIIDYQDHQRTCEYETIPCENEGCLEMQMRKNLPKH-QQICEYRLTQCGYCELKNPIIQMKYHHKECPMMKVICLNEECNVQVLRKDIEGHLSRDCLYEVVGCDYFDLGCLKKIQRCKMEEHLKENIVEHQLMM---------------LKDYKVTKEKLIETNNDLKQEKLKNEELTAKLETANEKMEQLE 1078
            +GYD +     +   ++C IC + LR+   TPC H FC  CI +   +  +      CP  N +  + Q+  D F  R +  SL VKC     GC  + ++   +DHQ  CE+  + C    C     + ++  H  + C  R   C  C         + H + CP+  VIC  E CN  ++R+ +  H   DC    + C +   GC +K+QR  +  HL+EN   H  M+               + + +  +E + +    L ++  +  ELTAK+ET +  + +L+
Sbjct:   54 QGYDVEFDPPLES-KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-----CPVDNEILLENQLFPDNFAKREI-LSLMVKCP--NEGCLHKMELRHLEDHQAHCEFALMDCPQ--CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVIC--EYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELK 331
The following BLAST results are available for this feature:
BLAST of TCONS_00023477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF65.913e-2226.46TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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