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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023494 ID=TCONS_00023494|Name=TCONS_00023494|organism=Clytia hemisphaerica|type=transcript|length=5094bpRun BLAST on NCBI protein sequence of TCONS_00023494-protein >TCONS_00023494-protein ID=TCONS_00023494-protein|Name=TCONS_00023494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1642bp MSVPEPTMQNEHGNWSQAGVGETDVDERDSADAMDERRKAQIAYEYLCHLRun BLAST on NCBI transcript from alignment at sc0000455:120433..153786+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023494 ID=TCONS_00023494|Name=TCONS_00023494|organism=Clytia hemisphaerica|type=transcript|length=33354bp|location=Sequence derived from alignment at sc0000455:120433..153786+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000455:120433..153786+ >TCONS_00023494 ID=TCONS_00023494|Name=TCONS_00023494|organism=Clytia hemisphaerica|type=CDS|length=167586bp|location=Sequence derived from alignment at sc0000455:120433..153786+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023494 vs. Swiss-Prot (Human)
Match: IQGA1 (Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1) HSP 1 Score: 1493.4 bits (3865), Expect = 0.000e+0 Identity = 813/1614 (50.37%), Postives = 1119/1614 (69.33%), Query Frame = 1
Query: 193 DERDSADAMDERRKAQIAYEYLCHLEEAKLWIEACIKEELPPTIELEEALTNGVICAKLANFFAPEIAPVRKIFDKDLTRYKERGLHFRHTDNIMYLIRSMEHIGLPAVFYPETTDIYDMKNMPRAIYCVHALSLYLFKLGLAPQIQDLYGKAQFTEEEINAMKSALDKYGINMPHFGKIGGILANEMSDNDAALHAAIVAINDAIDKGVAQDTCKALKDPAAQMQDISDAEAQKYQDVLYDSKQKKIEQASLKGKD-ESELDMYDKMLTQAEIQGHVNTINLNKAVELINEAVDERNEPKLMAAMTSREAGLSGVKPDNSSWYMQNLVDEKGLKAEKFGPENSALDQRDIQSSVNVANNLADRVRSMENAVRQINRILDSGTPDELMTWLQKPEGLLPVVDPSRPNLYMDNLKK-AKSDKGADLTHDDLTENMKLLLAVAAVNQAIDMNDAGKLETSLENPDAQLKDVDETLTLRYLSHFVAVKKEKQEEVGIEHGDLNHVEIQALIEYVNTEVQEENDLLAALSNINDAIASGDPDAILRYLQDPAAKLRNVRPKNAELYAIILREARGEKAKRLGEESAELWHEEIQACIDKANLIADDAERLAAGMVAINEXXXXXXXXXXXXXXXXXXXXXRSITPECADNYHVELKDAKTKKDDVGWNG--WCEHRVPQGYTYYNNYFTKDFRWSTPPDYQPGIGHLNRDEVQTVITKVTANHDRELFLKANEPSAVKLQAQWRGYKARKDFDERKDFLNRQLPAIIKIQSWWRGLKARREYQDRLNRLHGNVDAVVKIQAAIRGWLARKKYQDRLKYFKDHIDDIIKIQAFLRANMAHHDYKNLSNPT-PPVKSVRKFLHLLEHDHIDFQEELELQKLKAQVVTDIRSLAQLESDLNTMDIKIGLLVRNRITLQDVVMHNXXXXXXXXXX----XXXSSNASGIKALSREKREQLEGYQHLFYLLQTNPTYLARLIFKMPQSKTTKFMESVVLTLYNYASNSREEYLLLKLFETSLKEEILNKIDQIVEIVTGNPTVIKMVVHFNRGAKGQTSLRDILAPLVKEVLTDKNLVINTSPVEVYKQWINQMESETGKTSDLPYDVDNEFAMKQPEVVKRITASNKSLIAAADKFLNHFIKNMEKIPYGMRYTAKVLKESLIAKFPDAQEDDILKVVGNLIYYRYMNPAIVAPDAFDIVDVALDKGLTPDQRRNLGSIAKVLQYAASNKMFDRENSHLGALNPYITEAFGKFKKFFTDASSVDDAETNFGIDQYSDVTMVAKPVVYMTVQEILDTHQLLSEHMHEISTXXXXXXXXXXXXXXXVPTVEDVVGAPSNPDDKSSKKNIEVDEEAASKMARTEISLTLTNKFEVPDDDDSDMKA--LFVRTKKLIVEIMRVQQGETLTQILETSASKQQEMEHLRLQKNRVDVDKKKSSAVQRSSSAVGDSKLPLKDMKKKILRNLKVLEQQNLVSSKNDYQDIVNAIAKDIRNQRKYRLRRKHELQKLKQTLENLNRKSTFYEEQVDYFQQYIKVCLDNLNXXXXXXXXXXXXXXEQVIAKGTIKYTAQKLYEKGVVLEIEGLPQSHFNRVQFVIGSTDDVGVFAVSAKWMGVDMERVELVFQ 5001
+ER +A+ MDERR+ +AYEYLCHLEEAK W+EAC+ E+LPPT ELEE L NGV AKL NFF+P++ ++KI+D++ TRYK GLHFRHTDN++ + +M+ IGLP +FYPETTDIYD KNMPR IYC+HALSLYLFKLGLAPQIQDLYGK FTEEEIN MK+ L+KYGI MP F KIGGILANE+S ++AALHAA++AIN+AID+ + DT ALK+P A + ++ + A YQD+LY +KQ K+ A + ++ E E D+Y+++LTQAEIQG++N +N A+ I+ A+++ + L A+ S GL G++ NS WY++ L+ +K K + + L + ++QS V+ AN+ A + + AV IN + G ++ + L PE LP V P +LY L + +LTH +L+ +++L +VA +N+A++ D + L + L +++E RYL + +K + E + + +IQA +++VN VQEE++ + A+ IN+A+ GD L+ LQ PAAKL V + A+ Y L A+ EKA+ + +ESA LW +EIQ I ++N +A++ A G+ AINEAV+ D L AL+S V L + PEC + YH +L +AK KK VG N W +H V GY YY+N T++ W PP++ L+R+E+Q+ I+ VTA ++RE ANE +LQA+ RGY R++F R +FL +Q+PAI IQS WRG K ++ YQDRL L + D VVKIQ+ R ARK+Y+DRL+YF+DHI+DIIKIQAF+RAN A DYK L N PP+ VRKF+HLL+ DFQEEL+L K++ +V+T IRS QLE+DLN MDIKIGLLV+N+ITLQDVV H+KKL + + + + G+KALS+EKRE+LE YQHLFYLLQTNPTYLA+LIF+MPQ+K+TKFM+SV+ TLYNYASN REEYLLL+LF+T+L+EEI +K+DQI EIVTGNPTVIKMVV FNRGA+GQ +LR ILAP+VKE++ DK+L I T PV++YK W+NQMES+TG+ S LPYDV E A+ EV R+ +S +++ A DKFL+ + +++KIPYGMR+ AKVLK+SL KFPDA ED++LK++GNL+YYRYMNPAIVAPDAFDI+D++ LT DQRRNLGSIAK+LQ+AASNKMF +N+HL +N Y+++++ KF++FF A V + + F +D+YSD+ + KPV+Y+++ EI++TH LL +H I+ E +DP+ ELLDDLGEVPT+E ++G S + +K+ +A+TE+SLTLTNKF+VP D++++M A + + TK+LIV+++R Q GETLT+ILET A+ +QE EH R + R D K +++S S DS L L++ K+KI LK L + V KN YQ+++N IA+DIRNQR+YR RRK EL KL+QT LN K+TFY EQVDY++ YIK CLDNL K +K + + ++ K ++KYTA +L+EKGV+LEIE L + F V F I T++VG F V AK+MGV ME L +Q
Sbjct: 23 NERLTAEEMDERRRQNVAYEYLCHLEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLGLAPQIQDLYGKVDFTEEEINNMKTELEKYGIQMPAFSKIGGILANELSVDEAALHAAVIAINEAIDRRIPADTFAALKNPNAMLVNLEEPLASTYQDILYQAKQDKMTNAKNRTENSERERDVYEELLTQAEIQGNINKVNTFSALANIDLALEQGDALALFRALQSPALGLRGLQQQNSDWYLKQLLSDKQQKRQ--SGQTDPLQKEELQSGVDAANSAAQQYQRRLAAVALINAAIQKGVAEKTVLELMNPEAQLPQVYPFAADLYQKELATLQRQSPEHNLTHPELSVAVEMLSSVALINRALESGDVNTVWKQLSSSVTGLTNIEEENCQRYLDELMKLKAQAHAE---NNEFITWNDIQACVDHVNLVVQEEHERILAIGLINEALDEGDAQKTLQALQIPAAKLEGVLAEVAQHYQDTLIRAKREKAQEIQDESAVLWLDEIQGGIWQSNKDTQEAQKFALGIFAINEAVESGDVGKTLSALRSPDVGLYGVIPECGETYHSDLAEAKKKKLAVGDNNSKWVKHWVKGGYYYYHNLETQEGGWDEPPNFVQNSMQLSREEIQSSISGVTAAYNREQLWLANEGLITRLQARCRGYLVRQEFRSRMNFLKKQIPAITCIQSQWRGYKQKKAYQDRLAYLRSHKDEVVKIQSLARMHQARKRYRDRLQYFRDHINDIIKIQAFIRANKARDDYKTLINAEDPPMVVVRKFVHLLDQSDQDFQEELDLMKMREEVITLIRSNQQLENDLNLMDIKIGLLVKNKITLQDVVSHSKKLTKKNKEQLSDMMMINKQKGGLKALSKEKREKLEAYQHLFYLLQTNPTYLAKLIFQMPQNKSTKFMDSVIFTLYNYASNQREEYLLLRLFKTALQEEIKSKVDQIQEIVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMDDKSLNIKTDPVDIYKSWVNQMESQTGEASKLPYDVTPEQALAHEEVKTRLDSSIRNMRAVTDKFLSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIIGNLLYYRYMNPAIVAPDAFDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASNKMFLGDNAHLSIINEYLSQSYQKFRRFFQTACDVPELQDKFNVDEYSDLVTLTKPVIYISIGEIINTHTLLLDHQDAIAPEHNDPIHELLDDLGEVPTIESLIGESSGNLNDPNKE----------ALAKTEVSLTLTNKFDVPGDENAEMDARTILLNTKRLIVDVIRFQPGETLTEILETPATSEQEAEHQRAMQRRAIRDAKTPDKMKKSKSVKEDSNLTLQEKKEKIQTGLKKLTELGTVDPKNKYQELINDIARDIRNQRRYRQRRKAELVKLQQTYAALNSKATFYGEQVDYYKSYIKTCLDNLASKGKVSKKPREMKGKKS-KKISLKYTAARLHEKGVLLEIEDLQVNQFKNVIFEISPTEEVGDFEVKAKFMGVQMETFMLHYQ 1620 The following BLAST results are available for this feature:
BLAST of TCONS_00023494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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