TCONS_00023499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023499
Unique NameTCONS_00023499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023499 ID=TCONS_00023499|Name=TCONS_00023499|organism=Clytia hemisphaerica|type=transcript|length=2058bp
TTGGTGCTGTGGGGAGAAAATCAAAGCCCAAGACtgcaagaagaagaaaa
aacttgAGTAAAGGCCAATAAAAAAAGATCAATCTATACTTatAAAATAT
CATGATTAAAATTGAAGCACGCATCCTTCATCGCTCAGTATTCATCCCTG
AAGAGAAAATTTTCTGTGAAATTGTGTTTACAAACACAGCCAAAAAGGAT
CATGTCAGTGCAGCGAAACAACTGTCACATCAACGTCATTCTTCAGATAC
CAGAGTTCTTGCTCCTGAACGCTGGAGCAAAAATATGATAATGGACGCTA
AAGTCAGTAGTGATCAATCAGTGACTGTTGCATATGCCAGTGCACAATTA
TATTGTCAGTGCAATCTGAATGAAAGAAAGTATCGCATGCCATTAAATgc
aattgaaagcaaaaatgaTAGGTCTGCAAGGCATACAAGCTTCTCACCTG
ATCAAGGTGAAAGAGGACATTGCTTACTTAAAACGGAGGCAAATATTCTT
TTCTGTGATCTGACTTTGAAGCCTGGTGAATCCAAGAAATTTGAATATAA
AGAAGTTTTGCCAGCAAACATTCCACCATCCTATCGTGGCCAAGACATTA
AAATGAATTACAAAGTATGCATTGGAGTTGGACGTATTGGGAAACCGCTC
ACTTTGATAAGACTTCCATTTCGTGTGATTGAATTGAAAGgaattttcaa
AGCTCTCAAACAAAAAGCAAAGGAACAAGAGCCTGTCAGAGACACAGAGA
CAGAAGTAACAGACAATTTAATAACTGGCCAGAATCCATTCTTGCAAGAA
AGTGAAAGTCAAAAATATTCTAAACTTGACGTGGCTATGGATGCTCTCAC
AGCTTTCACGGTGAAAAGAAATCTAAATACATACAACATTCACAGTGTAA
ATGGTGCTGTAGGAAGGTTTTGTTTATCAAAACACTATTATCGTTTGGGT
GAAGACATACTGGGaacatttgattttcaaaattctccCATACCATGTGT
TAAGTATGTTGTATCGCTCCAATGTGAAGAAAAGATGTCCAAGAACTGTA
TGATCATACCTTCAGCATCAGAACCAGTACATTATAACACGCTAAGTCGA
CATGAGGAATGCTGTTATTCTGCTAGCAAGAGTAACTTCCTAATACCAAT
ACCTATCACAGCTACGGAGGAGTTCACACATAAATTAGTCTCTGTGCACT
GGAGATTGCATTTCGAATTCACCATCATTAAAATagacaataaaaataaa
tccaCAGACAGTCTTAATAATACAGAATCAAACACACCTTTAAAAAGACA
ATATGCAGGTATACCAAATACACTAAAAACTGAACTTATGCTATGGGAAT
TACCTGTCCATGTAGTAGCAACTAACCCTATACAAGCCTCACTTATGATG
CAAGCAGAGAGTAAACAGACAGTGATGATATAGTAACACCATTGGTGCTG
TCAATGATGGAGAGTTGGagatgtcaataatgacctccCAAACAATAACG
TCGTCGAAAAGTCTAACTATAGTGTATTGAAGCAACGACTTATAAACCGA
CTTATATATTTATAAGTCGTGTATTCATAGTAATGAGTTCGTTTCAAGCT
GTTTTCACAATGGAAGAGAATTGAAATTTATGTTCAAACGGTCCTTTGTA
TCGTGAAATTATTATACCATCATCGTAATTTCAAGCACAATGTCAACATT
CACATCACTTTTTTGAAGTAACAACAAGCTCAAAAAGTTTAAACATATAG
TTCAAATCAACCAACCCCTACTGGGATGCATACCATAGTAGTGAAGTAAA
CTACTTCGCTCGGCTATAATTATCACTTTTTTTGCAGTAGCAGCTTATTC
AAGTTTAACGCTGGACACGAATAGCATAGTAGCTACTACTGTGGATTGTA
TTTTGGTGGCAGTATGTATACTTTGGAAGCTCGTTACCAAAATATAATTT
ATCCTCAAAGCTTCACTAAAATAAGGATCCAAGAAGTTATTCCTGTTAAT
GTTCACAGGATCTTAAGATGAAACGAAAAATTTAACATGAAAAAAGGTTT
GATGTGNN
Run BLAST on NCBI

transcript from alignment at sc0000455:157708..171225+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023499 ID=TCONS_00023499|Name=TCONS_00023499|organism=Clytia hemisphaerica|type=transcript|length=13518bp|location=Sequence derived from alignment at sc0000455:157708..171225+ (Clytia hemisphaerica)
TTGGTGCTGTGGGGAGAAAATCAAAGCCCAAGACtgcaagaagaagaaaa
aacttgAGTAAAGGCCAATAAAAAAAGATCAATCTATACTTGTAAGTACT
TCTAAAAGACCAAAGATAACAAGTTAGTTTAGAAATTCCATGCAAAGTCT
CCATATTGCATATTGATTCCTTTTCATCAAACAGtcaaaaaaacaaagca
aagctTTGTGGTCTTTGTATCTTTTATTTTAGATACTGTCAGACTGTAAC
TTgatctaatgtcaacatccctcctctaattccgacaccctttttatcag
ctgaaattgatagaaaggttgagaggaataatcctttttcaatcagtgac
tcaagctttcatattattcttttctctaaagaagggtgtcggaattagac
gagggatgtcgatattagaccaacttacggtattttTTCCGCGaacgcac
cccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNcccccccccccccgggtattcCTGTCAGTCATTGAAAACAAAG
TGCAAGTTAGGATCTTCAGCCAATCTCTCCTAACTAACTAGGAGAGTTGT
ATCCTAATTTGGAGATTTAGGTATCCTAAATAGGAGAGCAGACACTTTGA
CCTGAATTTTTGAGGTTACTGCTTCGATCTGCGTTTGGAAAACTATGCAT
ACCTTTTCTTCTGTTCATCGAGATTTGCACcactgaccaaaatttcaagt
aatttctcTGGCTGGCAGGTTCCTCGAAAAATTAACATCCTTAATAATCT
GTCGTTCAGAGCCTAAAATTTTGCCAGCTACGGtccgaatttcaaaatgg
tacagCCGTAAATACATGCGTGATTTAtttgtaatatataatataagtat
taccgtgagaggtcctaaagccgacagcccagcctaattctgacccccca
aataactgttatgaaaaaaaattctatgtttacaaacattccctctccaa
gttgaacgataaactattgctagaactctcaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacaaaacatctaacaagat
agctgtaatgtcaagatgtcaattaatgtaattaaaaagtgcgagttgta
aaaataattaccttttattctggatcagttgttgctcatgtttaaaacga
taacagttttgtataaaagtgacttgtgcgggaaaaatacgaaacaactt
cgactggtttccatcaagaaacaaacagactaaattgtaaaaatggcgcg
aagttgaaaaagGGGCGGATGTggtagcactaatttgaataacaaacatc
gaatcaatgaggcggcaactatcaaagccctctttaccacctatAAGTTC
GGATGTTTATGTCCGCAATCGgacagctcttcatttaagtgtactctttg
acgacatatattatctttactacctactagaataggagcaaggcgtcatg
taatacataataattgtaatatacgtcgtctatatgtatccttacacaaa
gtcaagccaagtgccagtgtaacagagtgtaaagtaatagaaaccaggct
tgattacgtaacgtttcaaaatgagcacgctcgtacacagacctctttta
tattttcgtgtgctttggaaaatcaaaacatctcgttactttttatgatg
ctgttactactgttgtcgtttatgacgttgtgcatattgcaataaaaaaa
tatgttttgttattagaagcaattattgttatttggttcaattggttcag
tgtatcaaatctcacagtttagttgacacttggttatcttcgttgcgtca
cagcgaaaggtttgtttttattttagtttgtatctttgaaagaccccatc
ggctttaggctgggctgtcggctttaggacctctcacggtactgTACAGG
TCCGCGTTATACACGGCACAGAATGCAAAAACACGTGGTAGGCACGTGGA
TagattttgacctttaaaaaggttccagatcaataaaataccttcagaAT
GATATTTCTAATGATTACgattgtttttcaaacattttcatcaaTTAAAG
CTGACCAGTCAGCACTGAACTGCGTCCTGTGTTCTGTCTCCTGCATCCTG
TGTCCTGCGTTTCAAGCCAACtgcaagccaaccttgaaaactaatttgaa
gatcaacttcccaagtcaagaaaaagatctagacaggggagacggaaccc
accaaCGATCACGTTGATCATATTaactcttttttatattttattttgct
cTACTATAGTGTCTACTATACCATCTAGTAACaggaaaaccagaatatga
ttcttatATAGACCTTTGGTAATAAATACAGATAGATGTCATGTCTACTA
CATATTGTAAAttggtctaatattgacatccctcgtctaattctgacATC
CTTCTTTATTTTAGAGACAGGCAGTAaagaacaagtgcaaattaggatac
cttCCTGTACCTTCGGCAATCTCTCCTACTTAGAGAGTATCTTAAATCGG
ATacaaaaaagtatccaaaatagcaatcaacatcctaattaggatactaa
aaaccaaaaaaccttTATTTTTCACCAACCAGAGACATCGCTCCATCTTA
CCACTTCCAAGATGTAAATAATAAAAGCAAATGAGATTGTGTACTGAATT
TCATTGAGTTTGGCTGGCGGAATGCAAAACTATAGCCCAAAACCACTCAA
ATATGCTAACTAGCATACgcgaatgttttttttcgcgcgCCCCTTCCTTC
TTGTATAATAGaatttatcttttcaatgtcatTGGTATGTTACATATGTC
ATATCCAAAGTACACATGTTATATATATTTATCTCATCTTTAAACAGCCT
CCTggcaggaaaatagctattttacAATCGCtatatcatatctcattata
tctcctgcatcaccttgggtatgataacaaaaattgattaaaatggCGTC
AAAGATTTATATTTCATAactatatcaatatttttatcccctgttACATC
CACATcaccaattgtcccaagttagagNtatcaatatttttatcccctgc
tccgtatttttgatgaaaattacgtcacattcttcatatctctaaaacag
ctcttttGGAGTACTGTATTTAATGTTCTCAAAACATATCAATCTATATA
TCCACTGGCACCGTCAGTATCCTATTGAacatgaaaaaaacattttgttg
taaaTTGATTTACACACCTAGTATTTTGTGATAACGTCATTGTTTAAATC
TAATCGTCATTTGTCAATAGTTGGCATTTAATGGTTCGTTGTTTAAAAAT
CTTCTAAATAGCATATTTTCTATATGTTACGTTACGAGTGTGTTACAATC
TTCCagtctgtagtttgtatgacctgcgtcctgtgtcctgcgtcctgtgt
cctgtgtTTCGAACCAAtcggttggcttggctcaaatttttctatctttg
gctcaaattttaagcaatttctcgtagtttttgaaaatgttaatttcatt
aaaaagcgccaggtttatattttttcatgaattcctttagaagttttgcg
gcacatttttttacttgcgagtcaagtaaacaatATAGCGCTTGTGggat
taatctttgatacgcattcggcgggacgctagtgtgactaactgaacgTA
GGTGTAGCTTTTatcgtgaagtcgggtaacttgcatcagtggagggaaac
ttgcatagccatcaaatgactgaccaattaaagtagcaaaatttaaaaac
aaatcaactacgcacgcagctctgctcgcagctttactctaccatttttg
ttttaatttaacattgtattttaatgaccagccaggtcattcatttgagg
gctatgaatgttagcctccactgatgcaagttacccgacttcacggtatg
aAGTTTAAAAAACTTCAGGAAAAAACTAACTGGAATTTGAATTAGAGTAC
AGTTAGTCTCACTAGCATCCCACGGAAATTCCTATCAAAGATAATAGCAC
CCTCCCGGCGCTCTGCCTCTTCCCGTGCTTCCGGAGCAATGATTTTTAAC
ACGTtctaaaaaagcctttaaaaacatggttacaaaaaaatatGGAGATG
TTTTATTATAGaagtatatttcgcaggtctattgacctctatgaaacaat
ctcatttaaatttacagtttatcgttataatgtaacaaagttctaggcAC
AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGATTTTCGTTC
GTATATTTTTCCAGTTATTTCCGCCATATTGTGCACATTTTTTGCTGCTC
TCGCGATGCGActgtatttgacgtcaaataaaattgaatttaataAAATA
CTTACAGTCTTTAAGGATGATGGTTCagccattaatgaaattgaatttgt
cacattTTATATATTCGAAAGCATCACTGGAATCCTGGAAATTAGGGGTC
GACAACCCTGGAAAgtgaaaatttgtgaaaaagggcGTGGAAAATGACTA
ATTGATGTCAGTTGAGGGAGAAGAGAACCCCTTGGAAACCTTTAACAACC
CCTTGGAAACCTTTAAAacaacccccttggaaaatctgaaaaatgaacaa
aaacccctttggaaaatcaaggctcagacccccctggaaaagttcgtcaa
tacccctgtatggtttaaaaatggaatagcccaattatATCACGGATATT
TTGCTCCGGAACACCGGAAGTGCACTGGAAcgttctagttctagttttaG
TTCTATTAATTAATCACATATTAATTCCGCGTGACGGGCGTGCAAAGTTT
TTCTGGTGCAGTCTGCGGTCTCCGTCTGaaccaagccaaccttgaaaact
aatttaaacttcccaagaaaaagatataCGTTGGAGAAGTCCACCCACCT
AGATttgcgcaccgccggataggctatttcccagaaattttgcAGGACCT
CAACCAATGGCCCATTTAGGCCTAACAACAAATCGAAGGACTGTCTctgg
aattgaatgacaaaatttggttggttgattggCTAATGCACGTTTAGCAA
TCGGTCATTTATTTCATTTCAGCTAAGTTATTTGAATTCATCTTTCTAAA
TATCTAGTTTTGCAGTCTTGGACTTTTGgtttaaaatcttgaaaattctc
AGAACGGATATTACAAATAGACTCAAAAGCACCTCTTTTCAAGAGTGAAC
ATGATAGCATTTAGTTGAATGTGTAATCATAATGTCTTGAAAGTGGGGAA
AAAATCCTGATGACATTTTGAATAGGGGGTAGAACCTAGAGTAAGGGGGT
AGTTGATCTAGACTAGGGGGGTTAGTGTCCCCCTTCGGAACTATTTCTAA
ATTTATGAGAAATTTTGAAGTGTATAATTTCGATCATTTTAGGGTTTAGA
AGTTGTGAGTATTTGTGAGTATATGAACATTTTGTTTTACACCATCTTTG
TGGGTTTTTACTGTATCACCTTTGtagccgggtagctcagtcagTAGAGA
ATTTACCTTACAATCCAAGGGTTGTGGGTGTGATCCCTGGTCACCTCCCT
CCCCCCAACTCAGAGTAcaagtagcttagattgggtaatcttaTCTAGGC
AGTTACTAGGAGAAAGTCAAAAGTTTCTATGCTCTGAATTAAATCTTTAG
GGgcttcaagcaaaaaaatgcttatgtggtgtaaaatatcataaaatatc
CAAGGAACGTTAACAAAACATGAGAATTAGAAGAAGAATAGTGAGGAAAG
AAGATGTCTGTGATGAATGGTGGTTGGGTTTTATAGTATTGGTGGCAtag
ttttttattgttttagatAAAATATCATGATTAAAATTGAAGCACGCATC
CTTCATCGCTCAGTATTCATCCCTGAAGAGAAAATTTTCTGTGAAATTGT
GTTTACAAACACAGCCAAAAAGGATCATGTCAGTGCAGCGAAACAACTGT
CACATCAACGTCATTCTTCAGATACCAGAGTTCTTGCTCCTGAACGCTGG
AGCAAAAATATGATAATGGACGCTAAAGTCAGTAGTGATCAATCAGTGAC
TGTTGCATATGCCAGTGCACAATTATATTGTCAGTGCAATCTGAATGAAA
GAAAGTATCGCATGCCATTAAATgcaattgaaagcaaaaatgaTAGGTCT
GCAAGGCATACAAGCTTCTCACCTGATCAAGGTaaagcttttttgttttt
attatgttATTACCATACATACAGTATGTCTAGGTataattaagaaaatt
taagctTCAGATTCTCCTTTTATATCTTGGAATATCGTTAGTGTTGTATA
TATTATCTTGAAAACCTAATTGAgatctttttttcttctaatcAGGTGAA
AGAGGACATTGCTTACTTAAAACGGAGGCAAATATTCTTTTCTGTGATCT
GACTTTGAAGCCTGGTGAATCCAAGAAATGTAAGTACATCCAGTTAATAA
AAGGGCTTatcatttttagtatttttttctttttagcatgTCCAANTTCT
CCTTTTATATCTTGGAATATCGTTAGTGTTGTATATATTATCTTGAAAAC
CTAATTGAgatctttttttcttctaatcAGGTGAAAGAGGACATTGCTTA
CTTAAAACGGAGGCAAATATTCTTTTCTGTGATCTGACTTTGAAGCCTGG
TGAATCCAAGAAATGTAAGTACATCCAGTTAATAAAAGGGCTTatcattt
ttagtatttttttctttttagcttgTCCAAGTACACAATAGTTTATCATA
AGTAGTAAGTTGTGCAGTCACAAACGAGGGAGACccaaatatttttcctt
ttaaattGGACTGTTTGCCAGAAAGAAGATTAGGGTTGCAAGGCATCTTA
CCCATGATGCTTCTCTGTTTTTTCTAAGAGACATCTCAAGAAAACACAAA
AGCTTGTTGACTGTAGCCAAACAGAGCCAAATGCTTTACTTTTTGGCTGC
AGTAAACTAGCCAATATCTTGTTTGAATTGAAGTAATAAAATATTTATAT
CTTACAAAGAATTACTAGTCGACTAGTCAATGGTTCTGAATGATCTTAAA
TGATTCAAAATTAATACTATGAATAagtttataatttatttttaatttgc
aTTCCTGCAGTTGAATATAAAGAAGTTTTGCCAGCAAACATTCCACCATC
CTATCGTGGCCAAGACATTAAAATGAATTACAAAGTATGCATTGGAGTTG
GACGTATTGGGAAACCGCTCACTTTGATAAGACTTCCATTTCGTGTGATT
GAATTGAAAGGTATTAGAAAAATTACCATTCTTTTTCTACGTAGCCTTGG
GGGAGTTCACCCAAATATGGCTTCCAAAGTCTATTAGATTCAACCATGTT
TTTATAATACCTTCAAATCATAACACGGCGATCTTTGattggattaatcg
gattcaaatttccttgttttagccaaattttaggaaattaactgagaaga
aatgatttctttttcttttatccattAGAGAACCAATATAagtacattct
gtgaaaatttcaaatctctAGTACTTTTCTATCtggaattatcttgattc
cgatttagagggatttcaaccgggatgaggacgggatagagggatctctc
gaaaacgaaagtgcccaataactggtgaacagattgatgtatcaaaatac
tttttttcctacttttacattgctataatataaggagactttatatatac
caaatttcatctccttatgAGAACGACTTCAGGAGATACAagggatatta
gccaaaataatcccgattttacaaaagttccaatgaaaaaTCACTGTGTA
AATTGTAATTCAACAATGTTGATCGATGGATTCACTTATTTCAAATAATG
GACAATGTATAGTAATTGGGTCACTTTATCTACGTTGTAGCCAATATTTA
CTGATAAAGCATAagtcaaaatttcattaaatgtaaagtgTATTTTCAAT
CTGTTTGTGCTTAAATAGTGATAAGGTCTTTAGAATTTTATGTTTGATTG
ACTTTATACTGATCCACACCCTCTTTCTCCTTTTAGGAATTCTGTCCTTT
CCTTATCTTAAGAGTTTTCAAGTGGATGGTTGATTGACTTTATACTGATC
CACACCTGCGCCTCCTTTTAGGAATCCTGTCCTCTCcttatttttaggaa
ttttcaaAGCTCTCAAACAAAAAGCAAAGGAACAAGAGCCTGTCAGAGAC
ACAGAGACAGAAGTAACAGACAATTTAATAACTGGCCAGAATCCATTCTT
GCAAGAAAGTGAAAGTCAAAAATATTCTAAACTTGACGTGGCTATGGATG
CTCTCACAGCTTTCACGGTGAAAAGAAATCTAAgtaagaaaatatcaaaa
atgtaCGTTTATTTCTCATAAAAGTCACAATCTGTAACAAATTTTCAGCT
CGATAaaacggtaaacctctgaaggcacttgaaaattgaCCATCTGAAAA
AAATAGCCCGCAGTAAaatctacaacaagaatcttgttgtgcaccTGAAT
GTCGAAAACTGATATGGCTCCCTATTTTCAAACACAATCACGAAACTTtt
ttgtcattcccagtccttttagacgagtgcggtccttacgattttgagac
agcatattcgtcagattgttatgttttcacccatccctttagagcctcag
cgtggtgggcagaaaacgaTCGCAATCTGATCTCAGTTAAGTTGTTGAGA
TACAAGGGATAAATTGATTtgtatattatttattttatcaaatttctttt
tggttTCTTTCAGATACATACAACATTCACAGTGTAAATGGTGCTGTAGG
AAGGTTTTGTTTATCAAAACACTATTATCGTTTGGGTGAAGACATACTGG
GaacatttgattttcaaaattctccCATACCATGTGTTAAGGTTTGTCAA
AGTGTTATTTTAAAGTCAAAGTATTATTTTTCGtctaaaaatgatttgat
tttttttatacagagtttcaatattttaaagttGTTCTAGTCTCCTAAAA
GTTTGCCTTTTCAAACGACTACTGAAAAGTATTCACAAGTCTGGCTGTAG
GATTAATAtattaatcgcacgatgagttattttttcttctttagcgcgcc
ttcaaagagagcaattaatcgttaattgcatcctgtagagagcaattaat
cgttaatcacactcttcaatgaggCGCCAATATTTACAAAATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaa
aactctcagtgtaatttctgtaatttattttcctaactgggaaaaagtag
tgaaagccattgtgcgattagctcgtaatNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatt
ttcctcgtcctttcggactcggaaaattaataacaaaaaaatcactcgtg
caattatattcgaatttcactcgttatcatgtgattacatatactaattg
tAAGATTGTTGTAAGATAACTGTAGATTAATAATTTcgttaatttttcaa
agttgcCAGTTTCAATGATGAATATTCTTGTTAAACTTATTATTTTATTC
AATGAGCAGTATGTTGTATCGCTCCAATGTGAAGAAAAGATGTCCAAGAA
CTGTATGATCATACCTTCAGCATCAGAACCAGTACATTATAACACGCTAA
GTCGACATGAGGAATGCTGTTATTCTGCTAGCAAGAGTAACTTCCTAATA
CCAATACCTATCACAGCTACGGAGGAGTTCACACATAAATTAGGTATGAA
ACTGTAATTCTTTGTTTAAGACTTATGTATCTGCCATAGTGTCCTAGTAG
GTTGGTTCCCctcccttgaaaattgaaaaaaatctctcTGCCCCCCTTTT
AGTTCCCCTCcctaaggtttttaaaataattcCCCCCATTCATGTTATCT
CGTCCctatatacaaagaaaaaatgtaaattgtCACCACCTCGAATATAA
AACACTATTACAAGTTTTTAGCTTGAAGTTGAACAGacatattttatgtt
ttatgtttGACACCAGAgaacagaaaatctttttccCCAGATTTTTTCTC
CCCACCCTTGACAGTTTGGAGCTATTTTTTCTCCCCCTCCTTTTGATTGC
CCCCccctaaaattttgaaaacgattTTGCCCACCCTTTTCCCattctct
gaaaaaaaaactccccccccccccccccaacccccaaaaaaaaaaccccc
cccccccttttttaaacggTAATATGGTAATAGAGGAGTTCAAATACTTA
AGGCTAGCTGGCCTTGAAGATACCTTTGGCTTGCCGTTTCAGGCCCTTTT
TCCTAGTTGAGTGTACTCTAACGGTCAATCGTTGCTTCTACCCTTCTTAC
CAACCTTATTATAAAGAAGACAGCCCCAACTTTTTGaactatttttaatt
ttgaaatttaaagaagaaaaaaacgcTGTGATATGAAATAACTATTACAA
AAGGTTCATGAAGTTTTTCAAGTGAAAACTACTGTCCAATTGTACCTCCT
TTTACCAATATTTTCTCTTACCTTACCTCATAGTCTCTGTGCACTGGAGA
TTGCATTTCGAATTCACCATCNATATTTTCTCTTACTTTACCTCATAGTC
TCTGTGCACTGGAGATTGCATTTCGAATTCACCATCATTAAAATagacaa
taaaaataaatccaCAGACAGTCTTAATAATACAGAATCAAACACACCTT
TAAAAAGACAATATGCAGGTATACCAAATACACTAAAAACTGAACTTATG
CTATGGGAATTACCTGTCCATGTAGTAGCAACTAACCCTATACAAGCCTC
ACTTATGATGCAAGCAGAGAGTAAACAGACAGTGATGATATAGTAACACC
ATTGGTGCTGTCAATGATGGAGAGTTGGagatgtcaataatgacctccCA
AACAATAACGTCGTCGAAAAGTCTAACTATAGTGTATTGAAGCAACGACT
TATAAACCGACTTATATATTTATAAGTCGTGTATTCATAGTAATGAGTTC
GTTTCAAGCTGTTTTCACAATGGAAGAGAATTGAAATTTATGTTCAAACG
GTCCTTTGTATCGTGAAATTATTATACCATCATCGTAATTTCAAGCACAA
TGTCAACATTCACATCACTTTTTTGAAGTAACAACAAGCTCAAAAAGTTT
AAACATATAGTTCAAATCAACCAACCCCTACTGGGATGCATACCATAGTA
GTGAAGTAAACTACTTCGCTCGGCTATAATTATCACTTTTTTTGCAGTAG
CAGCTTATTCAAGTTTAACGCTGGACACGAATAGCATAGTAGCTACTACT
GTGGATTGTATTTTGGTGGCAGTATGTATACTTTGGAAGCTCGTTACCAA
AATATAATTTATCCTCAAAGCTTCACTAAAATAAGGATCCAAGAAGTTAT
TCCTGTTAATGTTCACAGGATCTTAAGATGAAACGAAAAATTTAACATGA
AAAAAGGTTTGATGTGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013208XLOC_013208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023499-exon-sc0000455-1491911889:157708..157798TCONS_00023499-exon-sc0000455-1491911889:157708..157798Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1510915933:157708..157798TCONS_00023499-exon-sc0000455-1510915933:157708..157798Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1575043694:157708..157798TCONS_00023499-exon-sc0000455-1575043694:157708..157798Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1491911889:165224..165588TCONS_00023499-exon-sc0000455-1491911889:165224..165588Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1510915933:165224..165588TCONS_00023499-exon-sc0000455-1510915933:165224..165588Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1575043694:165224..165588TCONS_00023499-exon-sc0000455-1575043694:165224..165588Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1491911889:165753..165836TCONS_00023499-exon-sc0000455-1491911889:165753..165836Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1510915933:165753..165836TCONS_00023499-exon-sc0000455-1510915933:165753..165836Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1575043694:165753..165836TCONS_00023499-exon-sc0000455-1575043694:165753..165836Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1491911889:166518..166667TCONS_00023499-exon-sc0000455-1491911889:166518..166667Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1510915933:166518..166667TCONS_00023499-exon-sc0000455-1510915933:166518..166667Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1575043694:166518..166667TCONS_00023499-exon-sc0000455-1575043694:166518..166667Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1491911889:167555..167740TCONS_00023499-exon-sc0000455-1491911889:167555..167740Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1510915933:167555..167740TCONS_00023499-exon-sc0000455-1510915933:167555..167740Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1575043694:167555..167740TCONS_00023499-exon-sc0000455-1575043694:167555..167740Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1491911889:168171..168298TCONS_00023499-exon-sc0000455-1491911889:168171..168298Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1510915933:168171..168298TCONS_00023499-exon-sc0000455-1510915933:168171..168298Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1575043694:168171..168298TCONS_00023499-exon-sc0000455-1575043694:168171..168298Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1491911889:169317..169500TCONS_00023499-exon-sc0000455-1491911889:169317..169500Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1510915933:169317..169500TCONS_00023499-exon-sc0000455-1510915933:169317..169500Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1575043694:169317..169500TCONS_00023499-exon-sc0000455-1575043694:169317..169500Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1491911889:170356..171225TCONS_00023499-exon-sc0000455-1491911889:170356..171225Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1510915933:170356..171225TCONS_00023499-exon-sc0000455-1510915933:170356..171225Clytia hemisphaericaexon
TCONS_00023499-exon-sc0000455-1575043694:170356..171225TCONS_00023499-exon-sc0000455-1575043694:170356..171225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000455supercontigsc0000455:157708..171225 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.02802	2.35884	1.60019	0	9.58227	7.99479	8.76888	8.71794	3.3909	3.3665	3.68423	0.537	3.73891	3.02157	0.915702	2.78138	1.81589	1.24082	2.70549	1.66389	2.26008	1.14077	4.62251	5.88355	6.27609	7.35547	0	2.28429	4.46678	5.46564
Blast
[Close]
BLAST of TCONS_00023499 vs. Swiss-Prot (Human)
Match: RGP1 (RAB6A-GEF complex partner protein 2 OS=Homo sapiens GN=RGP1 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.565e-72
Identity = 145/451 (32.15%), Postives = 220/451 (48.78%), Query Frame = 3 
Query:  102 MIKIEARILHRSVFIPEEKIFCEIVFTNTAKKDHVSAAKQLSHQRHSSDTRVLAPERWSKNMIMDAKVSSDQSVTVAYASAQLYCQCNLNERKYRMPLNAIESKNDRSARHTSFSPDQGERGHCLLKTEANILFCDLTLKPGESKKFEYKEVLPANIPPSYRGQDIKMNYKVCIGVGRIGKPLTLIRLPFRVIELKGIFKALKQKAKEQEPVRDTETEVTDNLITGQNPFLQESESQKYSKL--DVAMDALTAFTVKRNLNTYNIHSVNGAVGRFCLSKHYYRLGEDILGTFDFQNSPIPCVKYVVSLQCEEKMS------KNCMIIPSASEPVHYNTLSRHEECCYSASKSNFLIPIPITATEEFTHKLVSVHWRLHFEFTIIKIDNKNKSTDSLNNTESNTPLKRQYAGIPNTLKTELMLWELPVHVVATNPIQASLMMQAESKQTVMI 1430
            MI++ A +    VF+  E + C +  TN       SA+ +                                   +A+ASAQ++CQ + +E +  +P       + +    T F P +GERG C+L T   ILFCDL L PGESK + Y EVLP   PPS+RGQ +K  YK+ IG  R+  P+TL+R+P RV+ L G+           + VR  +    D  +   +PFL+E E  K      ++A + L A T  R+L+ YNI    G VG F + K  YRLGED++GT +     + C+++ VSLQ EE++       +    +PS S   H    +RH+E C   ++++F +PIP+++T  F   +VS+ WRLHFEF    + ++      L   E   P    + G P  +  +   W+LP+ V+ T+P  AS      S  T+ I
Sbjct:    1 MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSE----------------------------------ALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGL-----------QDVRFPQ----DEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPSVSHVTH----ARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEF----VTSREPGLVLLPPVEQPEPTT--WTG-PEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI 391
The following BLAST results are available for this feature:
BLAST of TCONS_00023499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RGP17.565e-7232.15RAB6A-GEF complex partner protein 2 OS=Homo sapien... [more]
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