TCONS_00023500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023500
Unique NameTCONS_00023500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1182

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023500 ID=TCONS_00023500|Name=TCONS_00023500|organism=Clytia hemisphaerica|type=transcript|length=1182bp
agaaaaaacttgAGTAAAGGCCAATAAAAAAAGATCAATCTATACTTatA
AAATATCATGATTAAAATTGAAGCACGCATCCTTCATCGCTCAGTATTCA
TCCCTGAAGAGAAAATTTTCTGTGAAATTGTGTTTACAAACACAGCCAAA
AAGGATCATGTCAGTGCAGCGAAACAACTGTCACATCAACGTCATTCTTC
AGATACCAGAGTTCTTGCTCCTGAACGCTGGAGCAAAAATATGATAATGG
ACGCTAAAGTCAGTAGTGATCAATCAGTGACTGTTGCATATGCCAGTGCA
CAATTATATTGTCAGTGCAATCTGAATGAAAGAAAGTATCGCATGCCATT
AAATgcaattgaaagcaaaaatgaTAGGTCTGCAAGGCATACAAGCTTCT
CACCTGATCAAGGTGAAAGAGGACATTGCTTACTTAAAACGGAGGCAAAT
ATTCTTTTCTGTGATCTGACTTTGAAGCCTGGTGAATCCAAGAAATTTGA
ATATAAAGAAGTTTTGCCAGCAAACATTCCACCATCCTATCGTGGCCAAG
ACATTAAAATGAATTACAAAGTATGCATTGGAGTTGGACGTATTGGGAAA
CCGCTCACTTTGATAAGACTTCCATTTCGTGTGATTGAATTGAAAGgaat
tttcaaAGCTCTCAAACAAAAAGCAAAGGAACAAGAGCCTGTCAGAGACA
CAGAGACAGAAGTAACAGACAATTTAATAACTGGCCAGAATCCATTCTTG
CAAGAAAGTGAAAGTCAAAAATATTCTAAACTTGACGTGGCTATGGATGC
TCTCACAGCTTTCACGGTGAAAAGAAATCTAAATACATACAACATTCACA
GTGTAAATGGTGCTGTAGGAAGGTTTTGTTTATCAAAACACTATTATCGT
TTGGGTGAAGACATACTGGGaacatttgattttcaaaattctccCATACC
ATGTGTTAAGTATGTTGTATCGCTCCAATGTGAAGAAAAGATGTCCAAGA
ACTGTATGATCATACCTTCAGCATCAGAACCAGTACATTATAACACGCTA
AGTCGACATGAGGAATGCTGTTATTCTGCTAGCAAGAGTAACTTCCTAAT
ACCAATACCTATCACAGCTACGGAGGAGTTCACACATAAATTAGTCTCTG
TGCACTGGAGATTGCATTTCGAATTCACCATC
Run BLAST on NCBI

transcript from alignment at sc0000455:157752..170328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023500 ID=TCONS_00023500|Name=TCONS_00023500|organism=Clytia hemisphaerica|type=transcript|length=12577bp|location=Sequence derived from alignment at sc0000455:157752..170328+ (Clytia hemisphaerica)
agaaaaaacttgAGTAAAGGCCAATAAAAAAAGATCAATCTATACTTGTA
AGTACTTCTAAAAGACCAAAGATAACAAGTTAGTTTAGAAATTCCATGCA
AAGTCTCCATATTGCATATTGATTCCTTTTCATCAAACAGtcaaaaaaac
aaagcaaagctTTGTGGTCTTTGTATCTTTTATTTTAGATACTGTCAGAC
TGTAACTTgatctaatgtcaacatccctcctctaattccgacaccctttt
tatcagctgaaattgatagaaaggttgagaggaataatcctttttcaatc
agtgactcaagctttcatattattcttttctctaaagaagggtgtcggaa
ttagacgagggatgtcgatattagaccaacttacggtattttTTCCGCGa
acgcaccccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNcccccccccccccgggtattcCTGTCAGTCATTGAAA
ACAAAGTGCAAGTTAGGATCTTCAGCCAATCTCTCCTAACTAACTAGGAG
AGTTGTATCCTAATTTGGAGATTTAGGTATCCTAAATAGGAGAGCAGACA
CTTTGACCTGAATTTTTGAGGTTACTGCTTCGATCTGCGTTTGGAAAACT
ATGCATACCTTTTCTTCTGTTCATCGAGATTTGCACcactgaccaaaatt
tcaagtaatttctcTGGCTGGCAGGTTCCTCGAAAAATTAACATCCTTAA
TAATCTGTCGTTCAGAGCCTAAAATTTTGCCAGCTACGGtccgaatttca
aaatggtacagCCGTAAATACATGCGTGATTTAtttgtaatatataatat
aagtattaccgtgagaggtcctaaagccgacagcccagcctaattctgac
cccccaaataactgttatgaaaaaaaattctatgtttacaaacattccct
ctccaagttgaacgataaactattgctagaactctcaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacaaaacatctaa
caagatagctgtaatgtcaagatgtcaattaatgtaattaaaaagtgcga
gttgtaaaaataattaccttttattctggatcagttgttgctcatgttta
aaacgataacagttttgtataaaagtgacttgtgcgggaaaaatacgaaa
caacttcgactggtttccatcaagaaacaaacagactaaattgtaaaaat
ggcgcgaagttgaaaaagGGGCGGATGTggtagcactaatttgaataaca
aacatcgaatcaatgaggcggcaactatcaaagccctctttaccacctat
AAGTTCGGATGTTTATGTCCGCAATCGgacagctcttcatttaagtgtac
tctttgacgacatatattatctttactacctactagaataggagcaaggc
gtcatgtaatacataataattgtaatatacgtcgtctatatgtatcctta
cacaaagtcaagccaagtgccagtgtaacagagtgtaaagtaatagaaac
caggcttgattacgtaacgtttcaaaatgagcacgctcgtacacagacct
cttttatattttcgtgtgctttggaaaatcaaaacatctcgttacttttt
atgatgctgttactactgttgtcgtttatgacgttgtgcatattgcaata
aaaaaatatgttttgttattagaagcaattattgttatttggttcaattg
gttcagtgtatcaaatctcacagtttagttgacacttggttatcttcgtt
gcgtcacagcgaaaggtttgtttttattttagtttgtatctttgaaagac
cccatcggctttaggctgggctgtcggctttaggacctctcacggtactg
TACAGGTCCGCGTTATACACGGCACAGAATGCAAAAACACGTGGTAGGCA
CGTGGATagattttgacctttaaaaaggttccagatcaataaaatacctt
cagaATGATATTTCTAATGATTACgattgtttttcaaacattttcatcaa
TTAAAGCTGACCAGTCAGCACTGAACTGCGTCCTGTGTTCTGTCTCCTGC
ATCCTGTGTCCTGCGTTTCAAGCCAACtgcaagccaaccttgaaaactaa
tttgaagatcaacttcccaagtcaagaaaaagatctagacaggggagacg
gaacccaccaaCGATCACGTTGATCATATTaactcttttttatattttat
tttgctcTACTATAGTGTCTACTATACCATCTAGTAACaggaaaaccaga
atatgattcttatATAGACCTTTGGTAATAAATACAGATAGATGTCATGT
CTACTACATATTGTAAAttggtctaatattgacatccctcgtctaattct
gacATCCTTCTTTATTTTAGAGACAGGCAGTAaagaacaagtgcaaatta
ggataccttCCTGTACCTTCGGCAATCTCTCCTACTTAGAGAGTATCTTA
AATCGGATacaaaaaagtatccaaaatagcaatcaacatcctaattagga
tactaaaaaccaaaaaaccttTATTTTTCACCAACCAGAGACATCGCTCC
ATCTTACCACTTCCAAGATGTAAATAATAAAAGCAAATGAGATTGTGTAC
TGAATTTCATTGAGTTTGGCTGGCGGAATGCAAAACTATAGCCCAAAACC
ACTCAAATATGCTAACTAGCATACgcgaatgttttttttcgcgcgCCCCT
TCCTTCTTGTATAATAGaatttatcttttcaatgtcatTGGTATGTTACA
TATGTCATATCCAAAGTACACATGTTATATATATTTATCTCATCTTTAAA
CAGCCTCCTggcaggaaaatagctattttacAATCGCtatatcatatctc
attatatctcctgcatcaccttgggtatgataacaaaaattgattaaaat
ggCGTCAAAGATTTATATTTCATAactatatcaatatttttatcccctgt
tACATCCACATcaccaattgtcccaagttagagNtatcaatatttttatc
ccctgctccgtatttttgatgaaaattacgtcacattcttcatatctcta
aaacagctcttttGGAGTACTGTATTTAATGTTCTCAAAACATATCAATC
TATATATCCACTGGCACCGTCAGTATCCTATTGAacatgaaaaaaacatt
ttgttgtaaaTTGATTTACACACCTAGTATTTTGTGATAACGTCATTGTT
TAAATCTAATCGTCATTTGTCAATAGTTGGCATTTAATGGTTCGTTGTTT
AAAAATCTTCTAAATAGCATATTTTCTATATGTTACGTTACGAGTGTGTT
ACAATCTTCCagtctgtagtttgtatgacctgcgtcctgtgtcctgcgtc
ctgtgtcctgtgtTTCGAACCAAtcggttggcttggctcaaatttttcta
tctttggctcaaattttaagcaatttctcgtagtttttgaaaatgttaat
ttcattaaaaagcgccaggtttatattttttcatgaattcctttagaagt
tttgcggcacatttttttacttgcgagtcaagtaaacaatATAGCGCTTG
TGggattaatctttgatacgcattcggcgggacgctagtgtgactaactg
aacgTAGGTGTAGCTTTTatcgtgaagtcgggtaacttgcatcagtggag
ggaaacttgcatagccatcaaatgactgaccaattaaagtagcaaaattt
aaaaacaaatcaactacgcacgcagctctgctcgcagctttactctacca
tttttgttttaatttaacattgtattttaatgaccagccaggtcattcat
ttgagggctatgaatgttagcctccactgatgcaagttacccgacttcac
ggtatgaAGTTTAAAAAACTTCAGGAAAAAACTAACTGGAATTTGAATTA
GAGTACAGTTAGTCTCACTAGCATCCCACGGAAATTCCTATCAAAGATAA
TAGCACCCTCCCGGCGCTCTGCCTCTTCCCGTGCTTCCGGAGCAATGATT
TTTAACACGTtctaaaaaagcctttaaaaacatggttacaaaaaaatatG
GAGATGTTTTATTATAGaagtatatttcgcaggtctattgacctctatga
aacaatctcatttaaatttacagtttatcgttataatgtaacaaagttct
aggcACAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGATTT
TCGTTCGTATATTTTTCCAGTTATTTCCGCCATATTGTGCACATTTTTTG
CTGCTCTCGCGATGCGActgtatttgacgtcaaataaaattgaatttaat
aAAATACTTACAGTCTTTAAGGATGATGGTTCagccattaatgaaattga
atttgtcacattTTATATATTCGAAAGCATCACTGGAATCCTGGAAATTA
GGGGTCGACAACCCTGGAAAgtgaaaatttgtgaaaaagggcGTGGAAAA
TGACTAATTGATGTCAGTTGAGGGAGAAGAGAACCCCTTGGAAACCTTTA
ACAACCCCTTGGAAACCTTTAAAacaacccccttggaaaatctgaaaaat
gaacaaaaacccctttggaaaatcaaggctcagacccccctggaaaagtt
cgtcaatacccctgtatggtttaaaaatggaatagcccaattatATCACG
GATATTTTGCTCCGGAACACCGGAAGTGCACTGGAAcgttctagttctag
ttttaGTTCTATTAATTAATCACATATTAATTCCGCGTGACGGGCGTGCA
AAGTTTTTCTGGTGCAGTCTGCGGTCTCCGTCTGaaccaagccaaccttg
aaaactaatttaaacttcccaagaaaaagatataCGTTGGAGAAGTCCAC
CCACCTAGATttgcgcaccgccggataggctatttcccagaaattttgcA
GGACCTCAACCAATGGCCCATTTAGGCCTAACAACAAATCGAAGGACTGT
CTctggaattgaatgacaaaatttggttggttgattggCTAATGCACGTT
TAGCAATCGGTCATTTATTTCATTTCAGCTAAGTTATTTGAATTCATCTT
TCTAAATATCTAGTTTTGCAGTCTTGGACTTTTGgtttaaaatcttgaaa
attctcAGAACGGATATTACAAATAGACTCAAAAGCACCTCTTTTCAAGA
GTGAACATGATAGCATTTAGTTGAATGTGTAATCATAATGTCTTGAAAGT
GGGGAAAAAATCCTGATGACATTTTGAATAGGGGGTAGAACCTAGAGTAA
GGGGGTAGTTGATCTAGACTAGGGGGGTTAGTGTCCCCCTTCGGAACTAT
TTCTAAATTTATGAGAAATTTTGAAGTGTATAATTTCGATCATTTTAGGG
TTTAGAAGTTGTGAGTATTTGTGAGTATATGAACATTTTGTTTTACACCA
TCTTTGTGGGTTTTTACTGTATCACCTTTGtagccgggtagctcagtcag
TAGAGAATTTACCTTACAATCCAAGGGTTGTGGGTGTGATCCCTGGTCAC
CTCCCTCCCCCCAACTCAGAGTAcaagtagcttagattgggtaatcttaT
CTAGGCAGTTACTAGGAGAAAGTCAAAAGTTTCTATGCTCTGAATTAAAT
CTTTAGGGgcttcaagcaaaaaaatgcttatgtggtgtaaaatatcataa
aatatcCAAGGAACGTTAACAAAACATGAGAATTAGAAGAAGAATAGTGA
GGAAAGAAGATGTCTGTGATGAATGGTGGTTGGGTTTTATAGTATTGGTG
GCAtagttttttattgttttagatAAAATATCATGATTAAAATTGAAGCA
CGCATCCTTCATCGCTCAGTATTCATCCCTGAAGAGAAAATTTTCTGTGA
AATTGTGTTTACAAACACAGCCAAAAAGGATCATGTCAGTGCAGCGAAAC
AACTGTCACATCAACGTCATTCTTCAGATACCAGAGTTCTTGCTCCTGAA
CGCTGGAGCAAAAATATGATAATGGACGCTAAAGTCAGTAGTGATCAATC
AGTGACTGTTGCATATGCCAGTGCACAATTATATTGTCAGTGCAATCTGA
ATGAAAGAAAGTATCGCATGCCATTAAATgcaattgaaagcaaaaatgaT
AGGTCTGCAAGGCATACAAGCTTCTCACCTGATCAAGGTaaagctttttt
gtttttattatgttATTACCATACATACAGTATGTCTAGGTataattaag
aaaatttaagctTCAGATTCTCCTTTTATATCTTGGAATATCGTTAGTGT
TGTATATATTATCTTGAAAACCTAATTGAgatctttttttcttctaatcA
GGTGAAAGAGGACATTGCTTACTTAAAACGGAGGCAAATATTCTTTTCTG
TGATCTGACTTTGAAGCCTGGTGAATCCAAGAAATGTAAGTACATCCAGT
TAATAAAAGGGCTTatcatttttagtatttttttctttttagcatgTCCA
ANTTCTCCTTTTATATCTTGGAATATCGTTAGTGTTGTATATATTATCTT
GAAAACCTAATTGAgatctttttttcttctaatcAGGTGAAAGAGGACAT
TGCTTACTTAAAACGGAGGCAAATATTCTTTTCTGTGATCTGACTTTGAA
GCCTGGTGAATCCAAGAAATGTAAGTACATCCAGTTAATAAAAGGGCTTa
tcatttttagtatttttttctttttagcttgTCCAAGTACACAATAGTTT
ATCATAAGTAGTAAGTTGTGCAGTCACAAACGAGGGAGACccaaatattt
ttccttttaaattGGACTGTTTGCCAGAAAGAAGATTAGGGTTGCAAGGC
ATCTTACCCATGATGCTTCTCTGTTTTTTCTAAGAGACATCTCAAGAAAA
CACAAAAGCTTGTTGACTGTAGCCAAACAGAGCCAAATGCTTTACTTTTT
GGCTGCAGTAAACTAGCCAATATCTTGTTTGAATTGAAGTAATAAAATAT
TTATATCTTACAAAGAATTACTAGTCGACTAGTCAATGGTTCTGAATGAT
CTTAAATGATTCAAAATTAATACTATGAATAagtttataatttattttta
atttgcaTTCCTGCAGTTGAATATAAAGAAGTTTTGCCAGCAAACATTCC
ACCATCCTATCGTGGCCAAGACATTAAAATGAATTACAAAGTATGCATTG
GAGTTGGACGTATTGGGAAACCGCTCACTTTGATAAGACTTCCATTTCGT
GTGATTGAATTGAAAGGTATTAGAAAAATTACCATTCTTTTTCTACGTAG
CCTTGGGGGAGTTCACCCAAATATGGCTTCCAAAGTCTATTAGATTCAAC
CATGTTTTTATAATACCTTCAAATCATAACACGGCGATCTTTGattggat
taatcggattcaaatttccttgttttagccaaattttaggaaattaactg
agaagaaatgatttctttttcttttatccattAGAGAACCAATATAagta
cattctgtgaaaatttcaaatctctAGTACTTTTCTATCtggaattatct
tgattccgatttagagggatttcaaccgggatgaggacgggatagaggga
tctctcgaaaacgaaagtgcccaataactggtgaacagattgatgtatca
aaatactttttttcctacttttacattgctataatataaggagactttat
atataccaaatttcatctccttatgAGAACGACTTCAGGAGATACAaggg
atattagccaaaataatcccgattttacaaaagttccaatgaaaaaTCAC
TGTGTAAATTGTAATTCAACAATGTTGATCGATGGATTCACTTATTTCAA
ATAATGGACAATGTATAGTAATTGGGTCACTTTATCTACGTTGTAGCCAA
TATTTACTGATAAAGCATAagtcaaaatttcattaaatgtaaagtgTATT
TTCAATCTGTTTGTGCTTAAATAGTGATAAGGTCTTTAGAATTTTATGTT
TGATTGACTTTATACTGATCCACACCCTCTTTCTCCTTTTAGGAATTCTG
TCCTTTCCTTATCTTAAGAGTTTTCAAGTGGATGGTTGATTGACTTTATA
CTGATCCACACCTGCGCCTCCTTTTAGGAATCCTGTCCTCTCcttatttt
taggaattttcaaAGCTCTCAAACAAAAAGCAAAGGAACAAGAGCCTGTC
AGAGACACAGAGACAGAAGTAACAGACAATTTAATAACTGGCCAGAATCC
ATTCTTGCAAGAAAGTGAAAGTCAAAAATATTCTAAACTTGACGTGGCTA
TGGATGCTCTCACAGCTTTCACGGTGAAAAGAAATCTAAgtaagaaaata
tcaaaaatgtaCGTTTATTTCTCATAAAAGTCACAATCTGTAACAAATTT
TCAGCTCGATAaaacggtaaacctctgaaggcacttgaaaattgaCCATC
TGAAAAAAATAGCCCGCAGTAAaatctacaacaagaatcttgttgtgcac
cTGAATGTCGAAAACTGATATGGCTCCCTATTTTCAAACACAATCACGAA
ACTTttttgtcattcccagtccttttagacgagtgcggtccttacgattt
tgagacagcatattcgtcagattgttatgttttcacccatccctttagag
cctcagcgtggtgggcagaaaacgaTCGCAATCTGATCTCAGTTAAGTTG
TTGAGATACAAGGGATAAATTGATTtgtatattatttattttatcaaatt
tctttttggttTCTTTCAGATACATACAACATTCACAGTGTAAATGGTGC
TGTAGGAAGGTTTTGTTTATCAAAACACTATTATCGTTTGGGTGAAGACA
TACTGGGaacatttgattttcaaaattctccCATACCATGTGTTAAGGTT
TGTCAAAGTGTTATTTTAAAGTCAAAGTATTATTTTTCGtctaaaaatga
tttgattttttttatacagagtttcaatattttaaagttGTTCTAGTCTC
CTAAAAGTTTGCCTTTTCAAACGACTACTGAAAAGTATTCACAAGTCTGG
CTGTAGGATTAATAtattaatcgcacgatgagttattttttcttctttag
cgcgccttcaaagagagcaattaatcgttaattgcatcctgtagagagca
attaatcgttaatcacactcttcaatgaggCGCCAATATTTACAAAATNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNtaaaactctcagtgtaatttctgtaatttattttcctaactgggaaa
aagtagtgaaagccattgtgcgattagctcgtaatNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNattttcctcgtcctttcggactcggaaaattaataacaaaaaaatca
ctcgtgcaattatattcgaatttcactcgttatcatgtgattacatatac
taattgtAAGATTGTTGTAAGATAACTGTAGATTAATAATTTcgttaatt
tttcaaagttgcCAGTTTCAATGATGAATATTCTTGTTAAACTTATTATT
TTATTCAATGAGCAGTATGTTGTATCGCTCCAATGTGAAGAAAAGATGTC
CAAGAACTGTATGATCATACCTTCAGCATCAGAACCAGTACATTATAACA
CGCTAAGTCGACATGAGGAATGCTGTTATTCTGCTAGCAAGAGTAACTTC
CTAATACCAATACCTATCACAGCTACGGAGGAGTTCACACATAAATTAGG
TATGAAACTGTAATTCTTTGTTTAAGACTTATGTATCTGCCATAGTGTCC
TAGTAGGTTGGTTCCCctcccttgaaaattgaaaaaaatctctcTGCCCC
CCTTTTAGTTCCCCTCcctaaggtttttaaaataattcCCCCCATTCATG
TTATCTCGTCCctatatacaaagaaaaaatgtaaattgtCACCACCTCGA
ATATAAAACACTATTACAAGTTTTTAGCTTGAAGTTGAACAGacatattt
tatgttttatgtttGACACCAGAgaacagaaaatctttttccCCAGATTT
TTTCTCCCCACCCTTGACAGTTTGGAGCTATTTTTTCTCCCCCTCCTTTT
GATTGCCCCCccctaaaattttgaaaacgattTTGCCCACCCTTTTCCCa
ttctctgaaaaaaaaactccccccccccccccccaacccccaaaaaaaaa
accccccccccccttttttaaacggTAATATGGTAATAGAGGAGTTCAAA
TACTTAAGGCTAGCTGGCCTTGAAGATACCTTTGGCTTGCCGTTTCAGGC
CCTTTTTCCTAGTTGAGTGTACTCTAACGGTCAATCGTTGCTTCTACCCT
TCTTACCAACCTTATTATAAAGAAGACAGCCCCAACTTTTTGaactattt
ttaattttgaaatttaaagaagaaaaaaacgcTGTGATATGAAATAACTA
TTACAAAAGGTTCATGAAGTTTTTCAAGTGAAAACTACTGTCCAATTGTA
CCTCCTTTTACCAATATTTTCTCTTACCTTACCTCATAGTCTCTGTGCAC
TGGAGATTGCATTTCGAATTCACCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013208XLOC_013208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023500-exon-sc0000455-1491911889:157752..157798TCONS_00023500-exon-sc0000455-1491911889:157752..157798Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1510915933:157752..157798TCONS_00023500-exon-sc0000455-1510915933:157752..157798Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1575043694:157752..157798TCONS_00023500-exon-sc0000455-1575043694:157752..157798Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1491911889:165224..165588TCONS_00023500-exon-sc0000455-1491911889:165224..165588Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1510915933:165224..165588TCONS_00023500-exon-sc0000455-1510915933:165224..165588Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1575043694:165224..165588TCONS_00023500-exon-sc0000455-1575043694:165224..165588Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1491911889:165753..165836TCONS_00023500-exon-sc0000455-1491911889:165753..165836Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1510915933:165753..165836TCONS_00023500-exon-sc0000455-1510915933:165753..165836Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1575043694:165753..165836TCONS_00023500-exon-sc0000455-1575043694:165753..165836Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1491911889:166518..166667TCONS_00023500-exon-sc0000455-1491911889:166518..166667Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1510915933:166518..166667TCONS_00023500-exon-sc0000455-1510915933:166518..166667Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1575043694:166518..166667TCONS_00023500-exon-sc0000455-1575043694:166518..166667Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1491911889:167555..167740TCONS_00023500-exon-sc0000455-1491911889:167555..167740Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1510915933:167555..167740TCONS_00023500-exon-sc0000455-1510915933:167555..167740Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1575043694:167555..167740TCONS_00023500-exon-sc0000455-1575043694:167555..167740Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1491911889:168171..168298TCONS_00023500-exon-sc0000455-1491911889:168171..168298Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1510915933:168171..168298TCONS_00023500-exon-sc0000455-1510915933:168171..168298Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1575043694:168171..168298TCONS_00023500-exon-sc0000455-1575043694:168171..168298Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1491911889:169317..169500TCONS_00023500-exon-sc0000455-1491911889:169317..169500Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1510915933:169317..169500TCONS_00023500-exon-sc0000455-1510915933:169317..169500Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1575043694:169317..169500TCONS_00023500-exon-sc0000455-1575043694:169317..169500Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1491911889:170291..170328TCONS_00023500-exon-sc0000455-1491911889:170291..170328Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1510915933:170291..170328TCONS_00023500-exon-sc0000455-1510915933:170291..170328Clytia hemisphaericaexon
TCONS_00023500-exon-sc0000455-1575043694:170291..170328TCONS_00023500-exon-sc0000455-1575043694:170291..170328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000455supercontigsc0000455:157752..170328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.48905e-08	0.979734	1.87398	0.000219376	0	0	0.316116	0	0	0	0	0	0.588736	0	0	0	0	0.937248	0	0	4.38089	0	0	0	2.26238e-09	0
Blast
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BLAST of TCONS_00023500 vs. Swiss-Prot (Human)
Match: RGP1 (RAB6A-GEF complex partner protein 2 OS=Homo sapiens GN=RGP1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 9.180e-69
Identity = 129/381 (33.86%), Postives = 193/381 (50.66%), Query Frame = 1 
Query:   58 MIKIEARILHRSVFIPEEKIFCEIVFTNTAKKDHVSAAKQLSHQRHSSDTRVLAPERWSKNMIMDAKVSSDQSVTVAYASAQLYCQCNLNERKYRMPLNAIESKNDRSARHTSFSPDQGERGHCLLKTEANILFCDLTLKPGESKKFEYKEVLPANIPPSYRGQDIKMNYKVCIGVGRIGKPLTLIRLPFRVIELKGIFKALKQKAKEQEPVRDTETEVTDNLITGQNPFLQESESQKYSKL--DVAMDALTAFTVKRNLNTYNIHSVNGAVGRFCLSKHYYRLGEDILGTFDFQNSPIPCVKYVVSLQCEEKMS------KNCMIIPSASEPVHYNTLSRHEECCYSASKSNFLIPIPITATEEFTHKLVSVHWRLHFEF 1176
            MI++ A +    VF+  E + C +  TN       SA+ +                                   +A+ASAQ++CQ + +E +  +P       + +    T F P +GERG C+L T   ILFCDL L PGESK + Y EVLP   PPS+RGQ +K  YK+ IG  R+  P+TL+R+P RV+ L G+           + VR  +    D  +   +PFL+E E  K      ++A + L A T  R+L+ YNI    G VG F + K  YRLGED++GT +     + C+++ VSLQ EE++       +    +PS S   H    +RH+E C   ++++F +PIP+++T  F   +VS+ WRLHFEF
Sbjct:    1 MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSE----------------------------------ALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGL-----------QDVRFPQ----DEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPSVSHVTH----ARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEF 328
The following BLAST results are available for this feature:
BLAST of TCONS_00023500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RGP19.180e-6933.86RAB6A-GEF complex partner protein 2 OS=Homo sapien... [more]
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