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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023501 ID=TCONS_00023501|Name=TCONS_00023501|organism=Clytia hemisphaerica|type=transcript|length=2014bpRun BLAST on NCBI protein sequence of TCONS_00023501-protein >TCONS_00023501-protein ID=TCONS_00023501-protein|Name=TCONS_00023501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp MIKIEARILHRSVFIPEEKIFCEIVFTNTAKKDHVSAAKQLSHQRHSSDTRun BLAST on NCBI transcript from alignment at sc0000455:157752..171225+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023501 ID=TCONS_00023501|Name=TCONS_00023501|organism=Clytia hemisphaerica|type=transcript|length=13474bp|location=Sequence derived from alignment at sc0000455:157752..171225+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000455:157752..171225+ >TCONS_00023501 ID=TCONS_00023501|Name=TCONS_00023501|organism=Clytia hemisphaerica|type=CDS|length=10656bp|location=Sequence derived from alignment at sc0000455:157752..171225+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023501 vs. Swiss-Prot (Human)
Match: RGP1 (RAB6A-GEF complex partner protein 2 OS=Homo sapiens GN=RGP1 PE=1 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 5.869e-72 Identity = 145/451 (32.15%), Postives = 220/451 (48.78%), Query Frame = 1
Query: 58 MIKIEARILHRSVFIPEEKIFCEIVFTNTAKKDHVSAAKQLSHQRHSSDTRVLAPERWSKNMIMDAKVSSDQSVTVAYASAQLYCQCNLNERKYRMPLNAIESKNDRSARHTSFSPDQGERGHCLLKTEANILFCDLTLKPGESKKFEYKEVLPANIPPSYRGQDIKMNYKVCIGVGRIGKPLTLIRLPFRVIELKGIFKALKQKAKEQEPVRDTETEVTDNLITGQNPFLQESESQKYSKL--DVAMDALTAFTVKRNLNTYNIHSVNGAVGRFCLSKHYYRLGEDILGTFDFQNSPIPCVKYVVSLQCEEKMS------KNCMIIPSASEPVHYNTLSRHEECCYSASKSNFLIPIPITATEEFTHKLVSVHWRLHFEFTIIKIDNKNKSTDSLNNTESNTPLKRQYAGIPNTLKTELMLWELPVHVVATNPIQASLMMQAESKQTVMI 1386
MI++ A + VF+ E + C + TN SA+ + +A+ASAQ++CQ + +E + +P + + T F P +GERG C+L T ILFCDL L PGESK + Y EVLP PPS+RGQ +K YK+ IG R+ P+TL+R+P RV+ L G+ + VR + D + +PFL+E E K ++A + L A T R+L+ YNI G VG F + K YRLGED++GT + + C+++ VSLQ EE++ + +PS S H +RH+E C ++++F +PIP+++T F +VS+ WRLHFEF + ++ L E P + G P + + W+LP+ V+ T+P AS S T+ I
Sbjct: 1 MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSE----------------------------------ALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGL-----------QDVRFPQ----DEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPSVSHVTH----ARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEF----VTSREPGLVLLPPVEQPEPTT--WTG-PEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI 391 The following BLAST results are available for this feature:
BLAST of TCONS_00023501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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