TCONS_00023510 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023510
Unique NameTCONS_00023510
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023510 ID=TCONS_00023510|Name=TCONS_00023510|organism=Clytia hemisphaerica|type=transcript|length=2790bp
TTTAAAAAAGTAGTTTTATACAGGTCAACCCTTAAAAACACGAAATGGTA
GCAAAGAGGAGAGGGTATTAACCGAGAAACAAAAACATGAACTACATCGA
CATGACGTGTACCTTCTTCATGAGAAAGTTtatgaaatggatttatttcG
TCAACATTTTTATGAACATAACAAAAAATTTGTTGAGACAATCAAAAAAG
ATTATACATCGATTGAGTCCTTTCAAGCTACACAACAAATCGAGAAAGCG
ATGGAACTTATCTTGGAAAGACATATTGAAGTCGACGACTACATCAAATG
CCAAGCATTAGACGTAAAAACAGCTATCAAAGCATTACGTAATGTCTGGA
CAGCCAATAAACAAATTAACCCAAATGAAATATCACACCTTGGtcaatta
tttcaattattatCGAAATTCGAATACTTACGTAGTAAACAACTACAAAA
AGAGGAAGAAGAGGATAAAGGGACTCCAGAAAGtggattgaaaacaaaaa
ttgtgGAGCCAAAAAAAAATAAGGCCTTTGTCGATGAAGAAGAAGCAGAC
ACTTCAAAGATGGTAAAGAAGAAATATACCGACGCTTATAAAAGATTCAA
CACATTATGCGATTACATCTCAATGCAAGATGGTCTTATCTTGGAATGTA
TTGACTTAGTGGAAGGAGCACCTATTGCCATGCCAACACTATCACCAAGG
ACAATACAGGATGCATCAGATTCATCTCATGCTGCTGGTAACACTGCAAT
GGATACAGGATCTCAACTTGCAAAAATTGAGTCTGCAAATGTCATATGTC
AATTGCAAAAGAAGAGTGTTGTTAAATTCAATCTCGACTTGTCCAATGAT
GAATCACCTCAAAAGTCACGTGAACATGGAATGCACCAATCACGACCCGG
CTCCACAAGTCCAGTTCAAGCATCCCTGGGTCCAGTTAAATCAAAACCTA
GATTAAAGAAACTTCCTTCAGGAATTCAAAGAAAGGTTTCAACAACGAAG
AGTAAGCCAAATTTAACCAGTGCAACATCGATCCATTCTAGAGAATCTAC
ATTGATTAAAAAGAAAGTTTCCACAATTAGATGTAAACCGAATTTAACAG
AAACGAAATCAAGAGATTGTGAATCGTTTTCGTCACCAAAGGAAATCTTA
TCAAAACCTTTACCTAGTAGTGCTCGAAAGTTCACTAAAGATATTCCAAA
CAATTTGATATCCTCTAAAAGTAATCAAGACGGAATAGCAGGTTCAAGAA
GTTCTAAAATTCCAGTTCGAATTTCAACAGTTATCAGTGACAGAGTCATA
TCACCAAAGGATTCTACGGAGCCAATCTGTCGACCACTATCCTCCCCTGC
ATTGGAGTTTCATCAAATTCATAACAAAGAATTCTTGAATAAAACAAGAA
GAAGTTTATTAGAAATCTCACCGAGCAACGCCAATGCTACCAAGAATGAA
CTAATGAATGAAACTCCTGGACATGACGCATCTTACATCCcttttttacc
aattttcaaGGGTCCAGCTACATGCCAGACAATTGGAATCTCGAAATTAA
AGCCAATTGTAAACCAACAAACTGACTCTCAACTGGAAACCGATTCATTA
AAACCATCAGACACATCTGTAGAAGACAGTCAAACAGACAGAAACCCTAA
AAAAGTATTCATGGAAAAAATGCCAAGATATGAGAGCATCCATTCCTCAG
GTTACGGTTCTAGCTTACCAAAACAACGACCTGTGTTACCAAAAATCCCT
CATACTGGTAACACAGAAAACCAACTTGAAGAGCCGGCTTACAACCATGC
CCCACTCCGTGGCAttttaaaacaatcaaaaatcaGTAAAGATGTTTTAC
AGTTATCGGACCCAACAGTTCGGCCACGTCGTGCTTCGACAGTTCATCGC
CAGGTTATACAACCTAATATTGTCTCAATGGCACCACCTACACATTCATA
TCAACCTAACAAGAAATTGACAAAATTACCACAAATCCCTCGCCGTCTTA
AAGGTGTTGCAATTGGTACGCCCCCAAAGATCCCGCACCCGCCATCAGAT
CCAAAACCTAAGAGGCAAGGATCAAACCACCGGCGTGACATTCAAGCGTC
AAACACGCGTCTTGGGCCGATACAATCGTCAACTATCTCACGCGGTTCAT
TACACCCATCCGTCCGCCCGAAAGGTTTTCACCCTCCAACACAGTCCGAC
CCACAACGTTTTGGGGCCTTAAAAGACGGCTTCCAACACAACATCACCTA
CTTCCATAACCCTCGtaattttcaataagttttgtttttaacatgttaGG
ATCTATAAgctataaatttatttttgaaacttaaAATAGTCTTTTCCCAC
TcattaaaaatctattttttctgtaaacaatATCTGAGTCAACAACAAAA
ACAGCTTCTAGATCCTAACTATAATTAGGTGTATGTTAAGGAAGAATAAA
TCGATTTTCTGGCTCAGAACGAAGGATTAAGCCAATAAATGATTAAGAGC
CCCATGAAATTAAGGGCGTATCTAAAAGAAGGATTTCTACAAGGGTACCC
AGGAGGAGAATATTGTGAGTATAGATATAACATCATAAATCAGCCCTCGT
GTTACTCACGCCCGTTCTGGTTCCTACCCTGGGTGTTTTGTATGTTAATA
TTTTCTTAGAAGCATGTCAAAAGAGAATCGACTCTTTCAACCTTATGTAT
ATATACCATACTGTATaaaatttcatctattttttttcattgtaaataaa
attcttaaaagaaaatcatATTGTCCTCCCTGTTCATTGC
Run BLAST on NCBI

transcript from alignment at sc0000455:301197..307382+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023510 ID=TCONS_00023510|Name=TCONS_00023510|organism=Clytia hemisphaerica|type=transcript|length=6186bp|location=Sequence derived from alignment at sc0000455:301197..307382+ (Clytia hemisphaerica)
TTTAAAAAAGTAGTTTTATACAGGTTAGTCAATACATATAAAATTCATAG
TTCCCGTTAAATACAATTAGCATATTCAAAATCTTTGTATTAATTTTCTC
CAAAGGTCAACCCTTAAAAACACGAAATGGTAGCAAAGAGGAGAGGGTAT
TAACCGAGAAACAAAAACATGAACTACATCGACATGACGTGTACCTTCTT
CATGAGAAAGTTtatgaaatggatttatttcGTCAACATTTTTATGAACA
TAACAAAAAATTTGTTGAGACAATCAAAAAAGATTATACATCGATTGAGT
CCTTTCAAGCTACACAACAAATCGAGAAAGCGATGGAACTTATCTTGGAA
AGGTATGtcttttttataatctttgaaaaaagatgtgaaagaagCTAACA
GTTAAGCTTCTCTTCAATCAATACGGtgtaaatttgtttttttaacgGCT
GTCAGAGTTTGATGGTGGTCCAAGCTTGGTATTACATCAAATACTAAACT
TATTCGTGAATATTTATGACATAATATTTTATACGAAAGCACCCAAAAAT
GACCGGGTGTTTGCCGCATTTATTTTGATAAAGACTTAGTAATAATGGCA
AACGACCGGGCTATTTTGAGTGCTTTCGCATGAAACATCGCGTCATGAAT
TCCAAATTTTTTAGACATATTGAAGTCGACGACTACATCAAATGCCAAGC
ATTAGACGTAAAAACAGCTATCAAAGCATTACGTAATGTCTGGACAGCCA
ATAAACAAATTAACCCAAATGAAATATCACACCTTGGtcaattatttcaa
ttattatCGAAATTCGAATACTTACGTAGTAAACAACTACAAAAAGAGGA
AGAAGAGGATAAAGGGACTCCAGAAAGtggattgaaaacaaaaattgtgG
AGCCAAAAAAAAATAAGGCCTTTGTCGATGAAGAAGAAGCAGACACTTCA
AAGATGGTAAAGAAGAAATATACCGACGCTTATAAAAGGTATGGGATTTA
TATATGCGTAGCGAAATACCTGCAAAacttatgagggagtgcagacgttt
atgacatattcctgatcttttgataaaacaaagacaataattacagtgtc
gtaaaaaccgctctcgttcataaattttgcagggtatctcgctacgccta
tgctgATTCACGAAGTACAGTAAACAATCCTTTATTCGATTTTCTATTAA
AGTAAATTTTCTAATTCAAGCGCACCAAAACGCGTTaataatacactctt
ctcgagatgcataaatttattgttgtcctcgttttcaaacagatttcatt
gctatgagattatacatttaaaccaatttaaattcccgaaaggcaaacat
taactctaaaacaaaagtacttgaaattcaaaatgtctcatgaggtgtaa
acaacacaNccaaacattaactctaaaacaaaagtacttgaaatcaaaat
gtctcatgaggtgtaaacaacacaattatcatcgtgaatatgtaatttta
tagcaatgaaatctgattgaaaacgaggacaacaatgaatttatgcatct
cgagaagagtgtattaggGGAACATTAAATTGGAAGCGCTAAATTGGAgg
taaaaatctttatttgggtCAGGGTTGTACAATATATAATGCATAGTGTa
tcccggctcgaaccaccaaagtAATTTGTCAGTAATTATAAGCAAGACAC
GCTTGCATTGTGCTGTTGAGCCGGTGCAAAAActctaaatttgaaaatat
ttataaaagaCACTACTATACCACGCGTAATAATTAGAATTAAATTGATC
TGGCNTGTGCTGTTGAGCCGgtgcaaaaaatatttataaaagaCACTACT
ACCACGCGTAATAATTAGAATTAAATTGATCTGGCAAAATTTCGGCTGCG
CGTTGTGAATAAGAGTAACATTAATTACAAATTTTCGCTAAAAACAGGGT
ACGTGTTAAATTAGAGTGCGCGTTAAATCAAAGACTTTAGTCtcttaaac
atttttcaaaaaagtctctctaatggTCACCTTCTCAGCAAAAATAAGCC
TCTCTAAAGGCCATTTTTTAGAGGTCCCATCTGCACATACCTCTTATCCG
CCAACCTTGAggtgccacccttaagggtgcctttctGAAATTTGGATCTC
CCTGTAAAGAAATGAAAGTTGCATGGGCGGCACACACCTCAGCTCACAAC
CCTAGTACCATCACTGGGTAAATGTTGTTTAGGTGGATCCGATCCGTTTT
TATTTGCTATAGACCTAGAAGATCAAATGTTGAGGTTATGAAATCTTCCA
CTTTGATTATCAGATTAAATCCAATTTGTTGTTTGGAGATTGAACTCACA
CTTGTTAGTGTTTAAATGACTTGATTGTGACCAATTACACCAGAATTCTC
TGAAATGGCTTTCAATAATTTAGGTTCAAATGACTATTTAACAATAATTT
TTCTTATCCAAAGATTCAACACATTATGCGATTACATCTCAATGCAAGAT
GGTCTTATCTTGGAATGTATTGACTTAGTGGAAGGAGCACCTATTGCCAT
GCCAACACTATCACCAAGGACAATACAGGATGCATCAGATTCATCTCATG
CTGCTGGTAACACTGCAATGGATACAGGATCTCAACTTGCAAAAATTGAG
TCTGCAAATGTCATATGTCAATTGCAAAAGGTATGTtgattttgacttga
aattgtACTTTTTGTTAAGCTATCTAGGAggcgtttattaggcacctggg
ACACTAGGAGTTCTAGCCCCGGGGAgcgggtacttaggcaaaatgggtgc
taggtatgtgcgagccatgaGGGttcctttttcacaccctcgaaaaTCGC
TCAAAGGATTACAAAACCATTACAAAGCAATTAAGTCTATTCCCATGAgt
tccaaaattacaaaaaccttaAATCGATTTCCTCAAAGaatcataaattc
ttgaaatttggactaaaatttgaaaatttctcctgAAATTTTGGGTAAAT
ATTCTCTCTAAGGTTGGCAAAAACTACAAACGATggacaaaatgttcaaa
attctGTCTCTTTatataagggtcgatttttgatTGGCTCGGGCATatac
atacccgtcatctcTCAAAGTATCATCCCGCGGGGTTTTAACCTCATCAA
GGTTAAACTTGACATGTCCCTATCTGGTTTGAATACGTGGCGTAGTTACT
TATCTGATCTTTGGAACTTTCATTTAATACGTTCTAATCCCACTGGTGGT
GATATTTCGGAGTCTTTCCAAAGTCACACAATAACTTAAAAGACCTTGGA
AAATAAAAGTCTTACAAAtcagaaagataaaaaatcctttaaaaCGAATA
ATACCATGTTAAGACATTTCGGTGTGTTTTGCTTTGGCCTTTTGTGTTTA
AGTGTCTTTTATATGTTTTTGTATATCTACACAAGTtcacactacacaat
atatatatatagtatcaGAGTATAGAGGcaaatggtttgttttggtccTA
ATTCGGAATAAGCATTCacaggcacgacgcaacgggtacggaAGCCGCAG
TaccagattttcaaaaaagaaaaacccaTTGTCCGCTTCGTTGGTAAAAT
TGctaatcgcttaaatttcctcattcgccgtaccagatataaaaagcttc
cgtcgtgcttGATTCATGAAGTCGGAGAAAGGGTCTTTAATTTAATAAAC
CAATCTAAATAacatttaataatttttttcttttctgcatAGAAGAGTGT
TGTTAAATTCAATCTCGACTTGTCCAATGATGAATCACCTCAAAAGTCAC
GTGAACATGGAATGCACCAATCACGACCCGGCTCCACAAGTCCAGTTCAA
GCATCCCTGGGTCCAGTTAAATCAAAACCTAGATTAAAGAAACTTCCTTC
AGGAATTCAAAGAAAGGTTTCAACAACGAAGAGTAAGCCAAATTTAACCA
GTGCAACATCGATCCATTCTAGAGAATCTACATTGATTAAAAAGAAAGTT
TCCACAATTAGATGTAAACCGAATTTAACAGAAACGAAATCAAGAGATTG
TGAATCGTTTTCGTCACCAAAGGAAATCTTATCAAAACCTTTACCTAGTA
GTGCTCGAAAGTTCACTAAAGATATTCCAAACAATTTGATATCCTCTAAA
AGTAATCAAGACGGAATAGCAGGTTCAAGAAGTTCTAAAATTCCAGTTCG
AATTTCAACAGTTATCAGTGACAGAGTCATATCACCAAAGGATTCTACGG
AGCCAATCTGTCGACCACTATCCTCCCCTGCATTGGAGTTTCATCAAATT
CATAACAAAGAATTCTTGAATAAAACAAGAAGAAGTTTATTAGAAATCTC
ACCGAGCAACGCCAATGCTACCAAGAATGAACTAATGAATGAAACTCCTG
GACATGACGCATCTTACATCCcttttttaccaattttcaaGGTAAGAACG
AAATTTAACTTTGTTTCCAGCCTtctaatcaaaattttctttcgtttcaa
aacttttccatcttTAGAAAACAATGATAGCTTAGTGGGAGCACCTACCA
ACTGGAAAATTTAACTACAAAAGAAATGTTTATCTCCCACTgtgggaaga
agttccaccggggctgtgagataggggtgtGATGAGTAATAGTTATCCAG
AACAATCTTTAAAGTAAAACTACAAAGGTTTAAAGAATGGTTGCAAACTT
ATTGTATCGTACTCTAGACTAAAGCTTTTTACAGACTAGTGAGTTACCGA
GTGAGGCAATTCGGAATACCAAACTTCGAAAAGTGATATCCCAAAGCTAT
TAAAAAGGGAATGTTCAAATGAGATTGTATCATGTTCTATGAGAATTTTG
GCTTGGAGAACAGAATTTATTTATAAATATGTATTTACTTTAAAACATAA
TTTTAGGGTCCAGCTACATGCCAGACAATTGGAATCTCGAAATTAAAGCC
AATTGTAAACCAACAAACTGACTCTCAACTGGAAACCGATTCATTAAAAC
CATCAGACACATCTGTAGAAGACAGTCAAACAGACAGAAACCCTAAAAAA
GTATTCATGGAAAAAATGCCAAGATATGAGAGCATCCATTCCTCAGGTTA
CGGTTCTAGCTTACCAAAACAACGACCTGTGTTACCAAAAATCCCTCATA
CTGGTAACACAGAAAACCAACTTGAAGAGCCGGCTTACAACCATGCCCCA
CTCCGTGGCAttttaaaacaatcaaaaatcaGTAAAGATGTTTTACAGTT
ATCGGACCCAACAGTTCGGCCACGTCGTGCTTCGACAGTTCATCGCCAGG
TTATACAACCTAATATTGTCTCAATGGCACCACCTACACATTCATATCAA
CCTAACAAGAAATTGACAAAATTACCACAAATCCCTCGCCGTCTTAAAGG
TGTTGCAATTGGTACGCCCCCAAAGATCCCGCACCCGCCATCAGATCCAA
AACCTAAGAGGCAAGGATCAAACCACCGGCGTGACATTCAAGCGTCAAAC
ACGCGTCTTGGGCCGATACAATCGTCAACTATCTCACGCGGTTCATTACA
CCCATCCGTCCGCCCGAAAGGTTTTCACCCTCCAACACAGTCCGACCCAC
AACGTTTTGGGGCCTTAAAAGACGGCTTCCAACACAACATCACCTACTTC
CATAACCCTCGtaattttcaataagttttgtttttaacatgttaGGATCT
ATAAgctataaatttatttttgaaacttaaAATAGTCTTTTCCCACTcat
taaaaatctattttttctgtaaacaatATCTGAGTCAACAACAAAAACAG
CTTCTAGATCCTAACTATAATTAGGTGTATGTTAAGGAAGAATAAATCGA
TTTTCTGGCTCAGAACGAAGGATTAAGCCAATAAATGATTAAGAGCCCCA
TGAAATTAAGGGCGTATCTAAAAGAAGGATTTCTACAAGGGTACCCAGGA
GGAGAATATTGTGAGTATAGATATAACATCATAAATCAGCCCTCGTGTTA
CTCACGCCCGTTCTGGTTCCTACCCTGGGTGTTTTGTATGTTAATATTTT
CTTAGAAGCATGTCAAAAGAGAATCGACTCTTTCAACCTTATGTATATAT
ACCATACTGTATaaaatttcatctattttttttcattgtaaataaaattc
ttaaaagaaaatcatATTGTCCTCCCTGTTCATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013211XLOC_013211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023510-exon-sc0000455-1491911889:301197..301219TCONS_00023510-exon-sc0000455-1491911889:301197..301219Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1510915933:301197..301219TCONS_00023510-exon-sc0000455-1510915933:301197..301219Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1575043694:301197..301219TCONS_00023510-exon-sc0000455-1575043694:301197..301219Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1491911889:301302..301548TCONS_00023510-exon-sc0000455-1491911889:301302..301548Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1510915933:301302..301548TCONS_00023510-exon-sc0000455-1510915933:301302..301548Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1575043694:301302..301548TCONS_00023510-exon-sc0000455-1575043694:301302..301548Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1491911889:301861..302184TCONS_00023510-exon-sc0000455-1491911889:301861..302184Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1510915933:301861..302184TCONS_00023510-exon-sc0000455-1510915933:301861..302184Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1575043694:301861..302184TCONS_00023510-exon-sc0000455-1575043694:301861..302184Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1491911889:303660..303876TCONS_00023510-exon-sc0000455-1491911889:303660..303876Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1510915933:303660..303876TCONS_00023510-exon-sc0000455-1510915933:303660..303876Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1575043694:303660..303876TCONS_00023510-exon-sc0000455-1575043694:303660..303876Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1491911889:304939..305637TCONS_00023510-exon-sc0000455-1491911889:304939..305637Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1510915933:304939..305637TCONS_00023510-exon-sc0000455-1510915933:304939..305637Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1575043694:304939..305637TCONS_00023510-exon-sc0000455-1575043694:304939..305637Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1491911889:306103..307382TCONS_00023510-exon-sc0000455-1491911889:306103..307382Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1510915933:306103..307382TCONS_00023510-exon-sc0000455-1510915933:306103..307382Clytia hemisphaericaexon
TCONS_00023510-exon-sc0000455-1575043694:306103..307382TCONS_00023510-exon-sc0000455-1575043694:306103..307382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000455supercontigsc0000455:301197..307382 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.164949	0.053617	0.0466909	0.0152266	3.82634	2.17763	2.82017	3.24801	1.26077	1.87029	1.23988	1.30049	0.473212	1.33516	0.0702475	0.0502576	0.175421	0.179801	0.014612	0.0458713	0.0664508	0.155579	0.0472818	0.0716433	5.58629	6.93024	0	0.0201152	0.305134	0.264251
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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