TCONS_00023526 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023526
Unique NameTCONS_00023526
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023526 ID=TCONS_00023526|Name=TCONS_00023526|organism=Clytia hemisphaerica|type=transcript|length=420bp
GTACCTTTCTCGCTTTCGCTGATGGCATTGGGCCAAACTAGTTGACATGA
AGAGCTGCTTTTTAAGACACCCAAGTTACCACTAGCGTCTGTACAAACTT
GGTCAGGGATTCCATCTGCATCGCAATCAATCATTGTAAAGGTGCGGTCT
TGACCGCAAAAATTATTTCCTCTAGGACAACTGTTGCCTGCTTTACTTTT
GCAAACACCCGACGGCCAAGTGGACTCGCAAGCATTTGAGCTTTCGATAA
CACCAAATTGACCATTTAAGGTGGAACAAACTGGATCAGGGATCCCATCA
TCATCACAATCCAGGTAAAAGTAAGCTGCGCCTACTCCACACCAATTAGC
AGGCCGGGGACAAACTGTTCCTTTACATGTTTGACATAGTGCATTGGGCC
ACTGGCTTTTACATCCACTC
Run BLAST on NCBI

protein sequence of TCONS_00023526-protein

>TCONS_00023526-protein ID=TCONS_00023526-protein|Name=TCONS_00023526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
SGCKSQWPNALCQTCKGTVCPRPANWCGVGAAYFYLDCDDDGIPDPVCST
LNGQFGVIESSNACESTWPSGVCKSKAGNSCPRGNNFCGQDRTFTMIDCD
ADGIPDQVCTDASGNLGVLKSSSSCQLVWPNAISESEKG
Run BLAST on NCBI

transcript from alignment at sc0000455:73409..73828

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023526 ID=TCONS_00023526|Name=TCONS_00023526|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at sc0000455:73409..73828 (Clytia hemisphaerica)
GAGTGGATGTAAAAGCCAGTGGCCCAATGCACTATGTCAAACATGTAAAG
GAACAGTTTGTCCCCGGCCTGCTAATTGGTGTGGAGTAGGCGCAGCTTAC
TTTTACCTGGATTGTGATGATGATGGGATCCCTGATCCAGTTTGTTCCAC
CTTAAATGGTCAATTTGGTGTTATCGAAAGCTCAAATGCTTGCGAGTCCA
CTTGGCCGTCGGGTGTTTGCAAAAGTAAAGCAGGCAACAGTTGTCCTAGA
GGAAATAATTTTTGCGGTCAAGACCGCACCTTTACAATGATTGATTGCGA
TGCAGATGGAATCCCTGACCAAGTTTGTACAGACGCTAGTGGTAACTTGG
GTGTCTTAAAAAGCAGCTCTTCATGTCAACTAGTTTGGCCCAATGCCATC
AGCGAAAGCGAGAAAGGTAC

Coding sequence (CDS) from alignment at sc0000455:73409..73828

>TCONS_00023526 ID=TCONS_00023526|Name=TCONS_00023526|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at sc0000455:73409..73828 (Clytia hemisphaerica)
AGTGGATGTAAAAGCCAGTGGCCCAATGCACTATGTCAAACATGTAAAGG
AACAGTTTGTCCCCGGCCTGCTAATTGGTGTGGAGTAGGCGCAGCTTACT
TTTACCTGGATTGTGATGATGATGGGATCCCTGATCCAGTTTGTTCCACC
TTAAATGGTCAATTTGGTGTTATCGAAAGCTCAAATGCTTGCGAGTCCAC
TTGGCCGTCGGGTGTTTGCAAAAGTAAAGCAGGCAACAGTTGTCCTAGAG
GAAATAATTTTTGCGGTCAAGACCGCACCTTTACAATGATTGATTGCGAT
GCAGATGGAATCCCTGACCAAGTTTGTACAGACGCTAGTGGTAACTTGGG
TGTCTTAAAAAGCAGCTCTTCATGTCAACTAGTTTGGCCCAATGCCATCA
GCGAAAGCGAGAAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013223XLOC_013223Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023526-proteinTCONS_00023526-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023526-exon-sc0000455-1491911889:73409..73828TCONS_00023526-exon-sc0000455-1491911889:73409..73828Clytia hemisphaericaexon
TCONS_00023526-exon-sc0000455-1510915933:73409..73828TCONS_00023526-exon-sc0000455-1510915933:73409..73828Clytia hemisphaericaexon
TCONS_00023526-exon-sc0000455-1575043694:73409..73828TCONS_00023526-exon-sc0000455-1575043694:73409..73828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000455supercontigsc0000455:73409..73828 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.894602	1.97424	1.62309	3.48365	0	0.776246	0	0.374072	0	0.47577	0.192787	0.175271	0.902628	0.322229	0	0	0	0.19014
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028974TSP_type-3_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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