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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023528 ID=TCONS_00023528|Name=TCONS_00023528|organism=Clytia hemisphaerica|type=transcript|length=832bp
ataaagattgaagaattccttcaaaagttataggtaaaagaaaaaagagt
gcacacttatcgtgaatagactttagtttgctagtctacacTCATCTCAT
AGTAAAATGTGTCTTTTCTTTGTTCTGTATTAGATTAAGTGACTCGCTTA
AAGCTAAGGCAAACCGGGGATATGGTATagataagtcaaaaaatttataa
ttagaTTATTTCAAAAGATTGGTACAGTAGTCTTATAAAATTTTCTAACG
GTTCTTAGCCCTTAAAACTgcatttttcattatttagCATTCACAATTTA
GACGCAAAACGATCTGGTGCTAAAATCCTCCCTTGGGCGTTTTCAAACAA
ACGCCTTCGAACGATTTTAAACACGCTGTTCTTTTGCTCTTCATTCCATT
GGTCGAATTTTAGCTGAgattgaaattccaaaaattgaagaaaatcattC
GACGAAGCACTTCCTTTACTGTTAATATACTTAGTGACGTCATGACAAAG
AGTGACATCATCCGTGACGTCACAAGTGTAAGGGATCTGAAGACTGTTCA
GTTCCTTTAAAATATCCAAATGGCACATACCATAGTTGCTAGTCATCTCT
TTAAAGTCTGGTGATGAAGTTTCAATTATATGAGTGCAGATCTCAGATCC
GACTTCAAAAGCTTGTATAAATATAATCATTATTCCACCTTGCTTAAGCA
TTGATCTAGCTTTCTCAATAGCTAATCCCGGATTTTTCATGTAGTACAAA
ACACCTGACATtatgatcaaatcaaaaatcgCTTCGTCATTTTCGGTAAT
GTTGACAGTAGCTCTAGAGAGAGATTGCTTTG Run BLAST on NCBI protein sequence of TCONS_00023528-protein >TCONS_00023528-protein ID=TCONS_00023528-protein|Name=TCONS_00023528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
KQSLSRATVNITENDEAIFDLIIMSGVLYYMKNPGLAIEKARSMLKQGGI
MIIFIQAFEVGSEICTHIIETSSPDFKEMTSNYGMCHLDILKELNSLQIP
YTCDVTDDVTLCHDVTKYINSKGSASSNDFLQFLEFQSQLKFDQWNEEQK
NSVFKIVRRRLFENAQGRILAPDRFASKL Run BLAST on NCBI transcript from alignment at sc0000455:113517..114348 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023528 ID=TCONS_00023528|Name=TCONS_00023528|organism=Clytia hemisphaerica|type=transcript|length=832bp|location=Sequence derived from alignment at sc0000455:113517..114348 (Clytia hemisphaerica)
CAAAGCAATCTCTCTCTAGAGCTACTGTCAACATTACCGAAAATGACGAA
GcgatttttgatttgatcataATGTCAGGTGTTTTGTACTACATGAAAAA
TCCGGGATTAGCTATTGAGAAAGCTAGATCAATGCTTAAGCAAGGTGGAA
TAATGATTATATTTATACAAGCTTTTGAAGTCGGATCTGAGATCTGCACT
CATATAATTGAAACTTCATCACCAGACTTTAAAGAGATGACTAGCAACTA
TGGTATGTGCCATTTGGATATTTTAAAGGAACTGAACAGTCTTCAGATCC
CTTACACTTGTGACGTCACGGATGATGTCACTCTTTGTCATGACGTCACT
AAGTATATTAACAGTAAAGGAAGTGCTTCGTCGaatgattttcttcaatt
tttggaatttcaatcTCAGCTAAAATTCGACCAATGGAATGAAGAGCAAA
AGAACAGCGTGTTTAAAATCGTTCGAAGGCGTTTGTTTGAAAACGCCCAA
GGGAGGATTTTAGCACCAGATCGTTTTGCGTCTAAATTGTGAATGctaaa
taatgaaaaatgcAGTTTTAAGGGCTAAGAACCGTTAGAAAATTTTATAA
GACTACTGTACCAATCTTTTGAAATAAtctaattataaattttttgactt
atctATACCATATCCCCGGTTTGCCTTAGCTTTAAGCGAGTCACTTAATC
TAATACAGAACAAAGAAAAGACACATTTTACTATGAGATGAgtgtagact
agcaaactaaagtctattcacgataagtgtgcactcttttttcttttacc
tataacttttgaaggaattcttcaatctttat Coding sequence (CDS) from alignment at sc0000455:113517..114348 >TCONS_00023528 ID=TCONS_00023528|Name=TCONS_00023528|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0000455:113517..114348 (Clytia hemisphaerica)
AAGCAATCTCTCTCTAGAGCTACTGTCAACATTACCGAAAATGACGAAGc
gatttttgatttgatcataATGTCAGGTGTTTTGTACTACATGAAAAATC
CGGGATTAGCTATTGAGAAAGCTAGATCAATGCTTAAGCAAGGTGGAATA
ATGATTATATTTATACAAGCTTTTGAAGTCGGATCTGAGATCTGCACTCA
TATAATTGAAACTTCATCACCAGACTTTAAAGAGATGACTAGCAACTATG
GTATGTGCCATTTGGATATTTTAAAGGAACTGAACAGTCTTCAGATCCCT
TACACTTGTGACGTCACGGATGATGTCACTCTTTGTCATGACGTCACTAA
GTATATTAACAGTAAAGGAAGTGCTTCGTCGaatgattttcttcaatttt
tggaatttcaatcTCAGCTAAAATTCGACCAATGGAATGAAGAGCAAAAG
AACAGCGTGTTTAAAATCGTTCGAAGGCGTTTGTTTGAAAACGCCCAAGG
GAGGATTTTAGCACCAGATCGTTTTGCGTCTAAATTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023528-exon-sc0000455-1491911889:113517..114348 | TCONS_00023528-exon-sc0000455-1491911889:113517..114348 | Clytia hemisphaerica | exon |
| TCONS_00023528-exon-sc0000455-1510915933:113517..114348 | TCONS_00023528-exon-sc0000455-1510915933:113517..114348 | Clytia hemisphaerica | exon |
| TCONS_00023528-exon-sc0000455-1575043694:113517..114348 | TCONS_00023528-exon-sc0000455-1575043694:113517..114348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000455 | supercontig | sc0000455:113517..114348 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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