TCONS_00023533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023533
Unique NameTCONS_00023533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023533 ID=TCONS_00023533|Name=TCONS_00023533|organism=Clytia hemisphaerica|type=transcript|length=282bp
CTTGAATTTGCCAAAGACCTTGTCACAGCCCTGTTGTTATTGATTAATAA
ATCCTGGAAAAGATTTTGGAAGCTGCAAAGATGTTATTAGTTATATATTC
CCACGGCTGTTTTTTAATAGGTATAAGTTTTGTTCATTATGTAGAAGCTT
CGGCTtaaataattttatttcaagattttagTTCTTATTAACCTTTGCTA
CGTTTTTAGGTGTTGAATCTATCTAACATACTCTCATTTTCTGCAAGATT
TTAAATCATTTAAGTCAAAATCTTGAAGTGCG
Run BLAST on NCBI

transcript from alignment at sc0000455:314614..314895

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023533 ID=TCONS_00023533|Name=TCONS_00023533|organism=Clytia hemisphaerica|type=transcript|length=282bp|location=Sequence derived from alignment at sc0000455:314614..314895 (Clytia hemisphaerica)
CGCACTTCAAGATTTTGACTTAAATGATTTAAAATCTTGCAGAAAATGAG
AGTATGTTAGATAGATTCAACACCTAAAAACGTAGCAAAGGTTAATAAGA
ActaaaatcttgaaataaaattatttaAGCCGAAGCTTCTACATAATGAA
CAAAACTTATACCTATTAAAAAACAGCCGTGGGAATATATAACTAATAAC
ATCTTTGCAGCTTCCAAAATCTTTTCCAGGATTTATTAATCAATAACAAC
AGGGCTGTGACAAGGTCTTTGGCAAATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013230XLOC_013230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023533-exon-sc0000455-1491911889:314614..314895TCONS_00023533-exon-sc0000455-1491911889:314614..314895Clytia hemisphaericaexon
TCONS_00023533-exon-sc0000455-1510915933:314614..314895TCONS_00023533-exon-sc0000455-1510915933:314614..314895Clytia hemisphaericaexon
TCONS_00023533-exon-sc0000455-1575043694:314614..314895TCONS_00023533-exon-sc0000455-1575043694:314614..314895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000455supercontigsc0000455:314614..314895 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.405924	0	0	0.962439	0.961101	0.332704	0.547056	0	1.44646	1.11193	0	0.535837	2.3287	1.36303	0	2.51067	0	0	1.32103	0	0.534655	1.08946
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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