TCONS_00023541 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023541
Unique Name	TCONS_00023541
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3479

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000456:43937..50617+

transcript sequence

>TCONS_00023541 ID=TCONS_00023541|Name=TCONS_00023541|organism=Clytia hemisphaerica|type=transcript|length=3479bp
ctttagagtctaaaaagaaaaacaatgtaaTAACTATACAATCATCTTAA
CTTCTGTTCGATGCAATGTGAAAATGGGGCAATTAATGTGTTGTCAGTAT
GTTGGCAAATCAGTCACCGTCAATGGGACAACATATTCAGTTGATAAAAC
CATCGGAGAAGGAGCTTTCTCATTTGTTCAGCTAATGTCCAAAGGCTCCA
AAAAGTACGCTTTGaaaCGTGTTTTGATTCAACTACCGGAACACAATGAN
ccacgtgataggcattgataatacaaatttaaaaaatctaaagaaaattt
ttgaaaatgatgacgtcatttatgacgtcatcaaattttgaaaattttac
tcatcttcagcatagattttaagaaaaaatcttcatggaaattgcaaaac
aggcaattatgttaaagaacagtcttttacctttcagaatcttcaaacag
aatcgaaatatctttattggttcgactgtatataatagacatttttggta
aaccatatatttgggcttttttccgacaggtggaaattttgtgatgacgt
catcagtttttgaatgacgtcatcaatttttttttcttcctggaaaattg
tatcatgatggagaacatctgtaccaaatttcatggccatagctcttcta
gatcgaaaataatcgagtgtggtagattctaccccccccctggggataca
aaagtcaaaaaagcttgaggctaatagggttaaaggaAGATTCGTGGAAA
CATAAGCCATTTATATTTAAATCCTGTCCTAATGCCATTTTTCTTCCATC
TTCAGATGGTTGGTAGAGAAACCAAAGCTCACAGAGCAATCAACAATCGC
TATGTGATGCCATTAATTGACTCAGAAGTTGTAACCAAGAGTAACATGAA
AGAAGCAAGGCTCCTCTTCCCATACCATCGATTAGGATCAGTTCAAGAAA
TGATTGAGGTTGCCCAGATCTCTAAGAATCCAATTgcagaaaaagaaatt
cttcaaatttttaaaacgcTGTGCGAGGGTGTTTTAGCCTTTCACAAACT
TGACCCTCCTCTTGCGCATCGTGATATCAAGCCACATAACATGTTGATCA
TTGAGCGTGGTGCCATTCTGATGGATCTGGGAAGCGTTCGTCCCGCTCGT
GTGCCAATTTCATCAAGaAAAGAAGCATTGGCTTTGCAAGAGTCGGCTGC
TCAAGAATGTACAGCTGCTTTCAGAGCACCGGAGTTGTTCGAAGTTCCCT
CCGAATGTATGATCAACGAGAAGACAGATGTGTGGTCTTTAGGGTGTACC
TTGTTTGCTTTGTGTTATGGTGAGAGTCCGTGTGATGGAAGTGCATTGTC
CGCTGTCAATCCTCAAATCAAAGTCATCGAAGGAAAatattcGATGGACT
TGCACAAGTTGATTTTCGCCATGCTCAAAGTAGAACCAGAAGAACGACCT
TACGTAGAAGATGTATTATCAATTTTGAATGAGATGCAGCCAAACCTATA
AAGACATTAGCCCGGAGTAGAGAAAAATGTTATCTTGGAAATACCATTCA
GATTATAGGCTGATTTTTTGCGTACTGAGACTGCATCATGATGAAACTAT
TGATACGTCTAGATCTAAAGACAATTCAGCTAGGAATTATCACGTCGACG
CCTTTTAATTTTAAAGACTTTGAATTTGATGCGTACATCGCATTcaattt
taggattttttaaattttgttctcagctagatttttattttattgctaTT
TGTCAAGATCTATCATATTGACTCTTTTCCGTCATACCCTCTGCGATACA
CcttcttctcacagacccggtaggattttttttacCCTGGGGGTAAAGAT
AATGGACTGATTCTCGACGGGAATTAATCCACATGTTTTATATGGCTGTT
GATTTGAATTCAATTGTTTaatagtcagaaaattcagtggaaatggaaaa
aatgacacaatattttgcagtgaggattttttTATTGAGGAACATTGAAA
CGTCATTTTCCACTGatattttagtcaatttttccagtgggaggggttcc
agtggatctgtgagaaggggtgttgcTAGAGAATGAGAACACAAGAAATC
TATGTGAGCAAACCTTTTTTTGAAGCCATCTTGTcaataatagtattgtg
tagtTTTTCATCCATTCATTCTTAAGTTTTTCTCGCCTACTGATGGTTTC
AGTGGAAAGCAGATgatgagaaattttttattctgAATCTTTGTTCAATC
GTCACCAGActtatttatttgaaaactaattttttacaaaaatttatatt
attattttcaaaactttagaatatctcttttattttaaaggGGAAATACT
AATCAAATTTCTACATAAAGAATCGATCACTATCTTGATTAATCAATGAA
ACTGTCATTCTGTGGCATCGTCATTCCTTGTCTATAATGTGGCTTTGTTA
CAGTATTTAAATATGAAATCCCATGGCATTGGGCAAAGTTTAAAACAtgc
tataaaaatattttaagttcaagatattttattgaaattacGTAATGTTT
CTTCTACTTTTTATGTAGCGAAAACTTTTGATCACGTGACAAATATTACG
CGtcattcttcattttcgaataAATTTCGTTTTGCGTATATCAATGACAT
TTTGTGTTCATGTAGCTGATCCTTCAAGTCGCCAATGTACATAAACTGTT
CTTGTATCAAACccttatatttcaaaatttccatacTGATATCGTCCATT
TTGCTATCTATTGTCAACTCATGCTCAAAGTGTTGTTTCAAATCAAGGTT
TAGGTTTTGTAATTTGTCTCTAAGAATTGTGTTATATTTATCTTTCGTTA
AGGCTTGTTTGATTTGTCCCTGTTCTTCACCACTTGAATCCAGTAGGAAA
GCACATGATTTCATTTTCTCTTGTAATTCTTTGTATTCACCTCGTAGCTC
TGTAATTTTGTATTTCATTTCTTTAACTCTCTCTTCCTTCTTTTCTATAA
TGATTAATTTTTCCTCAGCCATCGTCTTAAGGTCTCGGTAGTGATCAACC
TTACTCAAAGATTTCCCTTGGTCTTTATCAAATGACATTTCGAAGGTCTT
TTTGGTAATGATAGCAAACGATTCTGTTGATCTATCATTCCCTATTCAAC
CAGtctttttaacaaatatttcaacTTCAAGTACATTTTCTTGATATCTG
CTAAAATCATTAAATAATTTCAGTTGAATTCCCTGTACAATTATCAACCG
GATTCTCTGATTACTCTTTCAAACTATagatgtttttcatattttgttaa
gttacgtaactttCACCATTTCATTATGGAAGCAATCGCATGACGTATTc
ttctacagggtgtccggaaaaaaagtatcaagTCGTGCTACTTcgataga
aagaaagttcttgtgtgtgtttcactaaatttacaatgtttatcaaagtt
tctatctgtgtcatattaattatcacgag

Run BLAST on NCBI

transcript from alignment at sc0000456:43937..50617+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023541 ID=TCONS_00023541|Name=TCONS_00023541|organism=Clytia hemisphaerica|type=transcript|length=6681bp|location=Sequence derived from alignment at sc0000456:43937..50617+ (Clytia hemisphaerica)
ctttagagtctaaaaagaaaaacaatgtaaTAACTATACAATCATCTTAA
CTTCTGTTCGATGCAATGTGAAAATGGGGCAATTAATGTGTTGTCAGTAT
GTTGGCAAATCAGTCACCGTCAATGGGACAACATATTCAGTTGATAAAAC
CATCGGAGAAGGAGGTACTAAGATTCCAAAGTTTGTTTATCGAGCCACAa
tgaaaagagaattttttccaTCTTTGGAGATTGATTTGTATTTGTTATGA
TCattgtgaaaaacttttttttatatataataatcCTTTCGTAATATTGA
TTTCTCTCATTTCACTTCAGCTTTCTCATTTGTTCAGCTAATGTCCAAAG
GCTCCAAAAAGTACGCTTTGGTAAGTTCTTCCGTTAAACGGCTTACAATG
GTGTGAATTTTGAATTCTAATGCTGTTCATTCTCATTTATCAACATATAA
ATCCAAATTGCTATACTAATACCCTGTTCCATATCTTGGATACTCCAGTT
AGGTCTCtaatacaattttttgtttgtttttagaaaCGTGTTTTGATTCA
ACTACCGGAACACAATGANccacgtgataggcattgataatacaaattta
aaaaatctaaagaaaatttttgaaaatgatgacgtcatttatgacgtcat
caaattttgaaaattttactcatcttcagcatagattttaagaaaaaatc
ttcatggaaattgcaaaacaggcaattatgttaaagaacagtcttttacc
tttcagaatcttcaaacagaatcgaaatatctttattggttcgactgtat
ataatagacatttttggtaaaccatatatttgggcttttttccgacaggt
ggaaattttgtgatgacgtcatcagtttttgaatgacgtcatcaattttt
ttttcttcctggaaaattgtatcatgatggagaacatctgtaccaaattt
catggccatagctcttctagatcgaaaataatcgagtgtggtagattcta
ccccccccctggggatacaaaagtcaaaaaagcttgaggctaatagggtt
aaaggaAGATTCGTGGAAACATAAGCCATTTATATTTAAATCCTGTCCTA
ATGCCATTTTTCTTCCATCTTCAGATGGTTGGTAGAGAAACCAAAGCTCA
CAGAGCAATCAACAATCGCTATGTGATGCCATTAATTGACTCAGAAGTTG
TAACCAAGAGTAACATGAAAGAAGCAAGGCTCCTCTTCCCATACCATCGA
GTAAGAAAAGTGTACAAAGATATTAGTAGCCCCATCGTTTAGTCTTACTA
CGGGTCTTGAATATTTGAATAAATAgaacttttattttgatttgtgcTTG
ATAATCTATTTTACTGGCCAAATAAAGTTTATTTCTTATTGATACAGTAG
AGTCcttataactcgaatgtcttcttaactcgaacaagttttcttgtccc
ttcagttaagaatgccttataaaccttacttcataattcgaaatttaatt
aactcgaacaaatttgtgttcaagttatggagactcttCCACTGTATATC
AATATCTTTAATCCTTAAATTCTAGGTTTCCAGTATTATTAAATGTCCCT
CATTATCCTCTTTTCAGTTAGGATCAGTTCAAGAAATGATTGAGGTTGCC
CAGATCTCTAAGAATCCAATTgcagaaaaagaaattcttcaaatttttaa
aacgcTGTGCGAGGGTGTTTTAGCCTTTCACAAACTTGACCCTCCTCTTG
CGCATCGTGATATCAAGGTAGGTTTTTTATGACTTTGATTAGTGTAagct
tttttggacctacctaaggtagtcctttaaattaacccttgtccgttcgt
tcgtccgttcgttcgttcgttcgtctgttgccagcttttctcgNAAGTAA
CTTTGATTAGTGTaagcttttttttctttatattgacctaccttaagtgg
ataaattttggcgtggatttaatttggcgaatgaccaaaatacgattttc
tgtggggatttaatttggcgatcgatcaatttcgtaaaatttggcgggga
tttaattcggcgaattggaaattttgtcacaccgaaatgggtgaaaatta
ctcaaaaatatactaaaaagttgtgatttttcacataattttccttttgt
taaatttggcggggatttaatttggcggattgccgaatttggaaattttg
gcgaggatttaatttggcgaattttgccaaaatttgccaaactcgccaaa
tttaatccccgccaaaatttatccacttaggTATTCCAAGGAGTTTTCTC
CTTATTGATGACGATACTATAATCTTTTTAGCGCTAATATACCAATATAG
GTTCAAAGTACAGGCGCCCtccaatttaaaaatatttgaaatggtAATTT
GCTCGGAAAACCTTACCTTGAAAACATTGAAGCATGAATCTCATAGCGTG
TGATAGCGTCCATTTTAGAGTTTGGTTAAAATAATTCACTTAGGACTATT
TCTCTTTAGCCACATAACATGTTGATCATTGAGCGTGGTGCCATTCTGAT
GGATCTGGGAAGCGTTCGTCCCGCTCGTGTGCCAATTTCATCAAGGTATA
CAATCGCATTACCTCTCATTTGCCACTTCGAGATGCTTCGAATTaatctt
caaatttcttttgtgtACTTTTATTGTGGAAGACATGTTTCGTACTCGCC
CTCCTGGCTCAGACTGGTACTCTTACAAGGAAGATTTAGCTATTAATCCC
TcgcttttcattctttttagaAAAGAAGCATTGGCTTTGCAAGAGTCGGC
TGCTCAAGAATGTACAGCTGCTTTCAGGTATTCTCAAAAGAAATGACAAT
TAAAGGAAAGATTTGCAATATCTTCTCCTCGAATGAAAAAAATCGTCCCC
CTCCAAGTTTTGTCTTGCCTCGAGGATGCTTAACTAGCTGTAGTACGCAT
AAAATTTACGCGTAAATGACCACGCTGACCGAATGCTGAAGGTACATTTT
TTACGCGTAATTTATGCATATTGGCCAATACGCATAAATTACCTTTCTAT
AGCAAGTCCTGTCCTTTAAAATCGTAGTACAGCTTTTCGTGTTACATTTG
GCTACATACTTGTAACAAGTTCTACATGGCTCCTTATTTCATCACTTGAC
TGCCATAGATCCTTTCCAGCGAGTGCACAAACTCCGAGAAAAAATTCTTC
CTTTCCATACAGTATTATAGCTGTTATTTCATGATGAGATAACTGATATG
TGATAATGTTAGCATCTGTAAACTAACGTTCTTCAGTTTTTCTCTTCTAA
CCTCACATTCGCTTAAATATATTAATCCATTCAATTGTTTCTTCATTCAG
ATTAATGATTCTTGTTGTTGTAGAGCACCGGAGTTGTTCGAAGTTCCCTC
CGAATGTATGATCAACGAGAAGACAGATGTGTGGTCTTTAGGGTGTACCT
TGTTTGCTTTGTGTTATGGTGAGAGTCCGTGTGATGGAAGTGCATTGTCC
GCTGTCAATCCTCAAATCAAAGTCATCGAAGGAAAGTAAGTCCACTTTAC
ATTATTTGTTTCGAAGCTTAGATTACATGTTTACTTATTGAATTTGttat
ctattcatgatatgcaccactggagagttcttctgagaacttttaaaatt
ttccacccaatacgtcacttaaaaaatagaaaatgacgtattgctgaaac
aaaaacagaaaagttgcataatttcgtgaagtcattgcagtggtgcatat
catgaataacttacaaagtttttctttaatattcatgatatgcaccattg
caatgtcttctggcattacatcacggacccaatagctgattggttgtaag
tgacgtaaagtcAGTCAacacgtcactttcaaccaatcagctgttgggtc
cgtggaagacattgcaatggtgcatatcgtgAATTGCCAAGTGGTCTTTG
ATGCTAGAATGAACAGCATAATCTTTTTTTGGTTGTGTAGTTTACATTGA
ATCGGTCTAAATTTATGATTGTTGAGCGAAGAGTGAAACGGAAACAGGTT
TAATAGAGAAAGCGAGTCACCAAGAGTCACAAAGTCTGAAGTATTTTAAT
GATGTTCAAGATAGTAAAGACTGCAGCAAAGATTTCTCGGTGGCAGAAAA
TTCCTAGGTTAGTAAGTTATATCATATTTTGTTTAGATTTGTGCGTTTGT
TTTGTTCATTGCGTGGTAATTTCTCTTTATATCATCAACAATACAAAGTA
GTAGGGTATGGTACAGCCTACACTTAAAATTACCTTAATTACGATAATTA
GATAACGCGAAATGTGGATGatgaattttacattttaattttttcagata
ttcGATGGACTTGCACAAGTTGATTTTCGCCATGCTCAAAGTAGAACCAG
AAGAACGACCTTACGTAGAAGATGTATTATCAATTTTGAATGAGATACAG
CCAAACCTATAANCTCTTTATATCATCAACAATACAAAGTAGTAGGGTAT
GGTACAGCCTACACTTAAAATTACCTTAATTACGATAATTAGATAACGCG
AAATGTGGATGatgaattttacattttaattttttcagatattcGATGGA
CTTGCACAAGTTGATTTTCGCCATGCTCAAAGTAGAACCAGAAGAACGAC
CTTACGTAGAAGATGTATTATCAATTTTGAATGAGATGCAGCCAAACCTA
TAAAGACATTAGCCCGGAGTAGAGAAAAATGTTATCTTGGAAATACCATT
CAGATTATAGGCTGATTTTTTGCGTACTGAGACTGCATCATGATGAAACT
ATTGATACGTCTAGATCTAAAGACAATTCAGCTAGGAATTATCACGTCGA
CGCCTTTTAATTTTAAAGACTTTGAATTTGATGCGTACATCGCATTcaat
tttaggattttttaaattttgttctcagctagatttttattttattgcta
TTTGTCAAGATCTATCATATTGACTCTTTTCCGTCATACCCTCTGCGATA
CACcttcttctcacagacccggtaggattttttttacCCTGGGGGTAAAG
ATAATGGACTGATTCTCGACGGGAATTAATCCACATGTTTTATATGGCTG
TTGATTTGAATTCAATTGTTTaatagtcagaaaattcagtggaaatggaa
aaaatgacacaatattttgcagtgaggattttttTATTGAGGAACATTGA
AACGTCATTTTCCACTGatattttagtcaatttttccagtgggaggggtt
ccagtggatctgtgagaaggggtgttgcTAGAGAATGAGAACACAAGAAA
TCTATGTGAGCAAACCTTTTTTTGAAGCCATCTTGTcaataatagtattg
tgtagtTTTTCATCCATTCATTCTTAAGTTTTTCTCGCCTACTGATGGTT
TCAGTGGAAAGCAGATgatgagaaattttttattctgAATCTTTGTTCAA
TCGTCACCAGActtatttatttgaaaactaattttttacaaaaatttata
ttattattttcaaaactttagaatatctcttttattttaaaggGGAAATA
CTAATCAAATTTCTACATAAAGAATCGATCACTATCTTGATTAATCAATG
AAACTGTCATTCTGTGGCATCGTCATTCCTTGTCTATAATGTGGCTTTGT
TACAGTATTTAAATATGAAATCCCATGGCATTGGGCAAAGTTTAAAACAt
gctataaaaatattttaagttcaagatattttattgaaattacGTAATGT
TTCTTCTACTTTTTATGTAGCGAAAACTTTTGATCACGTGACAAATATTA
CGCGtcattcttcattttcgaataAATTTCGTTTTGCGTATATCAATGAC
ATTTTGTGTTCATGTAGCTGATCCTTCAAGTCGCCAATGTACATAAACTG
TTCTTGTATCAAACccttatatttcaaaatttccatacTGATATCGTCCA
TTTTGCTATCTATTGTCAACTCATGCTCAAAGTGTTGTTTCAAATCAAGG
TTTAGGTTTTGTAATTTGTCTCTAAGAATTGTGTTATATTTATCTTTCGT
TAAGGCTTGTTTGATTTGTCCCTGTTCTTCACCACTTGAATCCAGTAGGA
AAGCACATGATTTCATTTTCTCTTGTAATTCTTTGTATTCACCTCGTAGC
TCTGTAATTTTGTATTTCATTTCTTTAACTCTCTCTTCCTTCTTTTCTAT
AATGATTAATTTTTCCTCAGCCATCGTCTTAAGGTCTCGGTAGTGATCAA
CCTTACTCAAAGATTTCCCTTGGTCTTTATCAAATGACATTTCGAAGGTC
TTTTTGGTAATGATAGCAAACGATTCTGTTGATCTATCATTCCCTATTCA
ACCAGtctttttaacaaatatttcaacTTCAAGTACATTTTCTTGATATC
TGCTAAAATCATTAAATAATTTCAGTTGAATTCCCTGTACAATTATCAAC
CGGATTCTCTGATTACTCTTTCAAACTATagatgtttttcatattttgtt
aagttacgtaactttCACCATTTCATTATGGAAGCAATCGCATGACGTAT
TcttctacagggtgtccggaaaaaaagtatcaagTCGTGCTACTTcgata
gaaagaaagttcttgtgtgtgtttcactaaatttacaatgtttatcaaag
tttctatctgtgtcatattaattatcacgag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013236	XLOC_013236	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000456	supercontig	sc0000456:43937..50617 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.31822	7.47541	13.0786	11.3671	25.3536	18.345	19.0353	20.6918	14.3198	15.3675	8.89055	8.00636	3.86171	3.05742	2.98822	3.15445	4.46309	4.18114	1.93067	2.40269	4.73254	4.33854	12.1465	11.0259	3.6745	5.31555	12.2504	9.18749	7.22894	7.38362

Blast

[Close]

BLAST of TCONS_00023541 vs. Swiss-Prot (Human)
Match: STK16 (Serine/threonine-protein kinase 16 OS=Homo sapiens GN=STK16 PE=1 SV=4)

HSP 1 Score: 147.902 bits (372), Expect = 2.590e-38
Identity = 89/234 (38.03%), Postives = 142/234 (60.68%), Query Frame = 2

Query:  815 RETKAHRAINNRYVMPLIDSEVVTKSNMKEARLLFPYHRLGSVQEMIEVAQISKNPIAEKEILQIFKTLCEGVLAFHKLDPPLAHRDIKPHNMLIIERGA-ILMDLGSVRPARVPISSRKXXXXXXXXXXXXCTAAFRAPELFEVPSECMINEKTDVWSLGCTLFALCYGESPCD-----GSALS-AVNPQIKVIEG-KYSMDLHKLIFAMLKVEPEERPYVEDVLSILNEMQP 1492
            RE   HR  N+  ++ L+   +  +    EA LL P+ + G++   IE  +   N + E +IL +   +C G+ A H      AHRD+KP N+L+ + G  +LMDLGS+  A + +   ++AL LQ+ AAQ CT ++RAPELF V S C+I+E+TDVWSLGC L+A+ +GE P D     G +++ AV  Q+ + +  ++S  L +L+ +M+ V+P +RP++  +LS L  +QP
Sbjct:   64 READMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA--KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALRQLLNSMMTVDPHQRPHIPLLLSQLEALQP 295

The following BLAST results are available for this feature:

BLAST of TCONS_00023541 vs. Swiss-Prot (Human)

BLAST of TCONS_00023541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
STK16	2.590e-38	38.03	Serine/threonine-protein kinase 16 OS=Homo sapiens...	[more]

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TCONS_00023541 (transcript) - C. hemisphaerica