|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023542 ID=TCONS_00023542|Name=TCONS_00023542|organism=Clytia hemisphaerica|type=transcript|length=2731bpRun BLAST on NCBI protein sequence of TCONS_00023542-protein >TCONS_00023542-protein ID=TCONS_00023542-protein|Name=TCONS_00023542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=671bp MDSWALERQLVDEDNPLKTVSVDFMHNEFAMKKERMVVLNEEDVSFMDDDRun BLAST on NCBI transcript from alignment at sc0000456:57248..77151+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023542 ID=TCONS_00023542|Name=TCONS_00023542|organism=Clytia hemisphaerica|type=transcript|length=19904bp|location=Sequence derived from alignment at sc0000456:57248..77151+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000456:57248..77151+ >TCONS_00023542 ID=TCONS_00023542|Name=TCONS_00023542|organism=Clytia hemisphaerica|type=CDS|length=28224bp|location=Sequence derived from alignment at sc0000456:57248..77151+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023542 vs. Swiss-Prot (Human)
Match: LONF3 (LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=1 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 2.117e-63 Identity = 108/289 (37.37%), Postives = 173/289 (59.86%), Query Frame = 1
Query: 1309 SRFTCALCCRVYYAATTTPCGHTFCSLCLERSLDYNTVCSICRTPIGDLITIKPKPVDVIVDMMVRTCWPAEYEQSKQAAISESTTLKFESDNIVTTPVFVCMATFPMLECPLHVFEPRYKLMMRRCLDSPQRSFGMCIYDEANGFKEYGVMLEMQDHQLLDDGRMLVNSIGGRRFKVLEKGSRDGYSTAKVQLLYDQPVEVNE--ELKDLENTVYTESKSFFNMLPTVIKHTIRMKYGDLPEQNQNELTSEHGPKWIWFMIRLMVHSDDDALAALQCQNVTERLELVR 2169
S CALC R++Y TTPCGHTFC CLER LD+N C +C+ + + + +VI++ ++ P E ++ ++ E L + N+ P+FVC +P + CPLH+FEP Y+LM+RRC+++ R FGMC+ D GF EYG +LE+++ Q DGR +V+SIG RRF+VL + RDGY+TA ++ + DQ V+ + EL L N VY ++ +F+ L +K+ I +G +PE++ + + +GP W W+M+ ++ L L +++ +RL +R
Sbjct: 463 SDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKNV---PIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFRVLHQSQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYQQASLWFHSLKLSLKNRILNHFGPMPEKDADPQMNPNGPAWCWWMLAVLPLESRAQLPFLAMRSLKDRLNGIR 748 The following BLAST results are available for this feature:
BLAST of TCONS_00023542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.