TCONS_00023546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023546
Unique NameTCONS_00023546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023546 ID=TCONS_00023546|Name=TCONS_00023546|organism=Clytia hemisphaerica|type=transcript|length=3491bp
agcaaaagtaacaaaaataatattttcgcCTTCTTTTTGGACTGTCAGAA
TGTGACAAAATAGAAATCGAATTTCGTCATATTATCAGTGTTGAAGAACG
CGATATTAAATCATGTCATAATCTTAGTTTTACCAAAGGGAAGAATCTAC
CATCAAAATGTTCGAGATACCTTGTGGGTGatgaaaaaagattgaaagtt
aGAAATTATAGATTTAAACAATATGGAGCGTTACGAAAATATGGGCCTAG
TTGGAGAAGGCTCATACGGAATGGTGTTGAAATGTAAGCATAAAGAAACA
GATCAGGTTGTGGCTATCAAAAAGTTCTTGGAGTCTGAAGATGataaaat
ggtcaaaaagaTCGCTCTAAGAGAAATCAAAATGCTAAAGACGCTCCGGC
ACGAGAATCTTGTCAATCTTCTAGAAGTGTTTCGAAGGAAGAAGAAACTA
TTTCTTGTGTTTGAATTTGTTGATCGAACCATCTTGGACGATTTGGAGAG
ATTCCCTGATGGTTTACCGGATGGTGAAGTGAAGTCCATCTCTTTTCAAG
TTCTGAGAGGACTAGAGTTTTGTCACAGCCATAATGTAATTCACCGTGAC
GTGAAgccggaaaatattttgatttcaaagaGTGGTGTCGTCAAATTATG
CGACTTTGGATTCGCTAGAACATTAGCCACAGGGCCTGGGGAGGTGTTTA
CAGATTATGTCGCAACTAGATGGTATCGTGCTCCTGAATTGCTCGTGGGA
GATGTCAATTATGGAAAGGCTGTTGATATTTGGGCGGTTGGTTGTTTGTT
ATTTGAAATGATAACTGGTGATCCATTATTCCCTGGAGACTCTGATATCG
ACCAACTTTTTCACATCACCAAGGCTCTTGGAAACCTGTGTCAGAGACAT
AAAGATGTATTTCACAGGAACCCCTTATTCACTGGAATGAAATTACCAAA
TATACGTTTGGAAAAAGTTGGCAAGAAATTCGGAAATTTGTCAACCAATT
TGAGTAACTTAATCACGGAATCGTTGTGTTTGGAAGTTCAAAAGAGGTTA
TCTTGCACCGAAATGATGAAGCACGCTTATTACCAAGAAAACGATTTCGC
TACCAAATTCCTGGTGATTTTAAAAGAGAGAATTCAACGAGAGAGCTCTT
CAAATCCATTTCTCAAATCCTTGGCTGCACAGAAACAAAGGCGACATTCG
AACGCTCAATCGCAGCGAGATAAACATTCACCTGGCACTAATAATACGAA
CAATAAAAACGTCAAACTCAAAGCCatacaaaatcatcaaaatgatAAGA
ATCTGAAAAGTGAAAACACCACAAAAGATAAGACTACGCCTTCTCAGCAT
TGTCCTGTCTTAGTGACTACAAGCTTGAAAACCGCTTCGAAAAAGACGCC
TAGTCCACGTAAAGCGAACGACATCGAAAAGAACAATGAATTAAATCTAA
AACATTCGAAGAATATTTCGAACGGTTTGAAACGGAATTCAGAATCGGAT
AAAGTTTTAAAGGATATGAGTAGATCTCAACTACGGAAGTCTGAAGGAAG
TTCACCGGAAGTGAAAGGAGCCAGTCGAACCATTCTTGATGTCTCCATTA
ACCAACCTGGGAAAAACCTCCCGGAAATTTGCAGCTCTGTCAATATTAAT
CGGGCACGTGgccatgacgtcatcaaacttAAGAAAGGTGGCGGAGGAAC
CAGTCATGGTGGTGGTTCAAAGAAGAGCTCACTCAGTAGCAAACATATTG
AACACGAGCCCACTGTACCTTTATATCCGGTTGCAGAAAAAGCCACCTTA
TTCACAGACAAGTCGAGTGAAGAAATCTTGAACAAGTGCAGTAAGAAGAA
AGGAGGAGAGATTGGGTTGCCCAAAGTTTCCGGATTAGTTTTACCCATCG
TCAAACAACAAGAATGTAAAACGAACAAAACAAGTCCGACCAGAGGAAGT
CGTAAATTGACGGTCGCTCCAACCATACCACACATTCAAAACATCGATCC
CTTTAGTATGCATTTTTCGCCCAGTAAAGAGCCAACAACTACAAGGAAAT
CGAGTCGTGACAATAACTTGCCAGCTGTTTGATGGTCCGTATACTTGATA
GTTACTTATTCTAATACCAATCTAGAAAtgttcctttgaaattcaaatag
CCCAAATATTTCACATCACAAATGAACCCTTTACTTGGTAACCTTCCAAA
GGAACAATGGAATGTCTGACTTTTTGGGTTTAAATGTTATGTGAGAGCTA
AGGTAAATCTGATTATATGATTAAGCAGAGTTTAAAAGCTTAAACTGGCC
TAAAGGAACTGTTCAAATTTGTTCGATTTAGAAGATCATACTTGATTGGG
TGTTCAACAATTTTACTATAAATGCTTATAGTTTACATATTGagaattat
tttgtatttttttgtcccTACAAATATGTATTCCAATTGTACATAAAAAT
GATAAGTAATTTTTAAATTAATCTAAATTTTGTCAATGGCGTTTTCTCTT
AGAGTTATAGCCTTCAAGAACTAAATGCTCAGTTCTATAAAGGTATGATA
TAATTACTCATCTAGAAGTTCTATAGaacaatttcaaattaatttgtGGT
TAATTAAAGGGCACCACTTCGTCAATTATATGCTAATACCTTTCTATTGa
ctggtagttacttgttatatCATAATCATTTGTTGTCAAGTCCAACTTCT
CTTTAACTACCTTCGAAACTTCAAGCTATATTAGCTTTGCACTATAAATA
GGACGTATATTttgactaaattgaaaattgaaaagccGCATTTAGAGTTG
TTAATGTTGAAACCATGTTCCCTGGTTTACCGCAGCATAATATCTTATTA
CATAAGCCTTGTATAAGAATTTCtcttagaaaaatttaaagtatggaact
atatatttttttatttcacagtATTGCTTCTCTAGCTGGACTAAACATAT
AGTTGGTGCTTTTGCAAGATCAATGTTGCTGAGTGTTTATAAAATGTCAT
ACTGTATTTGTTTATCGAAATGAGAGATAAATTAGCTGAATGATGATAAA
TTCTCAATTGGATAGGTCTGAAATTTTAAGTCTTCTTGTAAACTAAATCT
TGTGAAAAGGCTATCTTTTTATACCCCACAATCTGTTAGTCAGCTCCATT
ATATACTATTTGGTTTTGCACCAAGACTTTCTTGAGAACTGTTTATCATT
CCTCTAATTTTGTATATAGTGTATAAAGATTGTTCATTGTTATTTCCCAT
GATGCTAGCTTGTTCATAATATTATTCTGCTTAAActattttacattatt
ttttctgcattttaacatttttataaaGGTTCGAGTGGTATTTTAATTTG
CATTCTAGTTATTAtaatttttgtgtaaaaaagcctttatttttttcaga
accaTTTTGGTGTTTAGATTGTCTTTCGAAATTTATTCCCAGGACGTCAT
TCATTTGGAGTTAGACTAAAATTAACCCACACATGATATGG
Run BLAST on NCBI

transcript from alignment at sc0000456:90298..102755+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023546 ID=TCONS_00023546|Name=TCONS_00023546|organism=Clytia hemisphaerica|type=transcript|length=12458bp|location=Sequence derived from alignment at sc0000456:90298..102755+ (Clytia hemisphaerica)
agcaaaagtaacaaaaataatattttcgcCTTCTTTTTGGACTGTCAGAA
TGTGACAAAATAGAAATCGAATTTCGTCATATTATCAGTGTTGAAGAACG
CGATATTAAATCATGTCATAATCTTAGTTTTACCAAAGGGAAGAATCTAC
CATCAAAATGTTCGAGATACCTTGTGGGTGatgaaaaaagattgaaagtt
aGAAATTATAGATTTAAACAATATGGAGCGTTACGAAAATATGGGCCTAG
TTGGAGAAGGCTCATACGGAATGGTGTTGAAATGTAAGCATAAAGAAACA
GATCAGGTTGTGGCTATCAAAAAGTTCTTGGAGTCTGAAGATGataaaat
ggtcaaaaagaTCGCTCTAAGAGAAATCAAAATGCTAAAGGTATTattct
ttcatttcattttcattactcgtttttatgttttaaacGCAAATAAATAC
CCTTAATCCAATTTTCTACATTCTTCTAGACGTCCTACAGAAATTTGCCC
TTGTTGGGAAATACTGGGAAAGCTCTATTGTTTTCTGACGATTTTCTGAT
GATTTTCtgatataagaaatatttctgATAGTGTGTTCTGATAATGTAGA
ACACAAGGAAGAGGAAATTATTTATAGTGGCGATCCTTCAACTATTGAAA
GGCCAACTTTTATAAACCAACaacaaaaatgggaaaaatcCTATTTGGAA
GGCCTTTGCCCATTATTTATTCACACATAAAATGTTTCTGCGTATCTGTA
TCCAGCTTACTAGATGTTATAACCAGAACCAACGCTTTAACCATTTTAGA
CGCTCCGGCACGAGAATCTTGTCAATCTTCTAGAAGTGTTTCGAAGGAAG
AAGAAACTATTTCTTGTGTTTGAATTTGTTGATCGAACCATCTTGGACGA
TTTGGAGAGATTCCCTGATGGTTTACCGGATGGTGAAGTGAAGTCCATCT
CTTTTCAAGTTCTGAGAGGACTAGAGTTTTGTCACAGCCATAATGTGAGA
TTAACCTATTTTCTTTTAAGTGCAAAAGTTGACAAAGAGAATTGCTTTTA
AGTCTTTTAGAATCACCTTTTTGTAAGCTAATATACCACCAAAGCCTATT
TTTATCTTATTTCCGGTGATTTTATAGTTCAGGCTAATTAATATACCTGT
TTTTACCTTTGGTAATCAAACAtgggtttttcatttttaatctttttttc
tcgTCCTAGGTAATTCACCGTGACGTGAAgccggaaaatattttgatttc
aaagaGTGGTGTCGTCAAATTATGCGACTTTGGATTCGCTAGAACATTAG
GTATATTAGGGCAAAGCTATAAAGTGTTGTATTTGATTTATGCACTTtag
tcaaaaataatttgatagtttttttctatttaaacATTTAACCTTAGCCC
CGAAGAGATATCACAGCTATTGCCATTCAGTTGCAAGAGTTTGTGTCTAG
GGGGTCGAGGGCGATTGCAAGTGAAGTCGACACAAAATAAATTCTAttgt
tgatgtacggctctatatcacCTTTGCCCACCTAAACAGACGGCGGTATT
TTTGCGATCTTACCGTCTCTGAGCAAAGTGGAAGACAATTTTGGCTACAT
GTCAACTTTGGtttataccgtctccttcgatttGTCTTGATTACATAAAA
ACCCGCTTATTCTTTACACGAACCGTTATTTGTCCGAACATGTGAAAAGT
ATCGATTTTTCTTCTTAGATATGTTTGTGACATGGCAATGATAACTTTGT
TATGAATAATTTATATTGCTTACTTGTTTTAGCCACAGGGCCTGGGGAGG
TGTTTACAGATTATGTCGCAACTAGATGGTATCGTGCTCCTGAATTGCTC
GTGGGAGATGTCAATTATGGAAAGTGAgagaaaattttgtatttcaacAC
GTGACTGAATATCGTCGTTTTTTTACATGAAATATGAATGACAGCTTTAA
CTAATGAACCTTTtctaaaaaccaatttttttaaaaacacccTTCTTAGT
TCATCTAATGCCACTAACAAAGAAAACCAAAAAGATATACCAATATGTCT
AAGTAAAGTTTATCCGCGGgatctttaggcaagaaaggaCGTGTTTATTT
GTAATGAAAccattttactatttttccAGGGCTGTTGATATTTGGGCGGT
TGGTTGTTTGTTATTTGAAATGATAACTGGTGATCCATTATTCCCTGGAG
ACTCTGATATCGACCAACTTTTTCACATCACCAAGGCTCTTGGTAAGATA
CAAGctgttttcttcaaaatttaacATGACTCATCAGTTCACGCAAAATC
TATCCAGTTTAAGTATTCGTCTTGAAATTTTGCTTTTTACGGACATTTCA
TCGGAAAAAGAATCGAATATTTTAGTAGTGCGATGGATCAACCCATTCTT
GTGTAAACTGAGGGGGCATCTTTCTAAAATTTGTATTTTGGCGCccaaaa
ataaggaaaatgTCTTCAACAcggaaactttttgaaatttttcctaGTTT
TGGCTAAAATCTTATAATAATTCTAGGGTCTAAAAAGCAGAGATTTGCCG
AAAATAGCAATCAGATGCGCTTTTTGGCACCCCTTGTTATTGGCATTAAA
TTAGCTGCTCGCCACCAAGCCACTGGAATATTTCATAACAAATGTCGGTA
TACTAGGAAAACTTAAGATTGTTATCGAGGCCAGTTTTCtaaatgaaaga
atttttatCTACAGGAAACCTGTGTCAGAGACATAAAGATGTATTTCACA
GGAACCCCTTATTCACTGGAATGAAATTACCAAATATACGTTTGGAAAAA
GTTGGCAAGAAATTCGGAAATTTGTCAACCAATTTGAGTAACTTAATCAC
GGTAAGTGGGTCGTCTTTCAAACGTAAGTTACTTGGAAACTGAGCGATAT
GAGCATCTTACCAATCATTCCGAATGTCGTCCGAATAACACTGTAGCTCA
AAGGGATGAATGCAACTGCGAGTGTTAAACCACCTGCTAAGAAAACAGCC
ACCATGGCAGTTTTCTGCCGTCCTGTCTTATTTTGAAAGTACACGGCCAG
TAGTGAAGCAGGTAATTCAACAAAACTCCCCAAAGCAAAGCTGAGATACA
TAGATCCACCAAGATCACCAACACCTAATGAAATTCCCTAATAAACCATA
CCGTTAGTCATCCAAATCACACCCATTGGTAAAATCTTCCTCCTGGTTTC
GCTCCTTTTGAACAACTCTATTGGATTGGTTTATTATGGGAAGTCGTATC
TTGTTGCAAAGGAGCTATAGTAACATTCTCGTCCATTTCCTTCCCGTTCC
ATTTTGCTATTCTCTCAAACACTTGAAGAGCTTCTTCCATTCTATTCTTC
AATCTTAACCAACGGATCGATTCTGGGAATAATTtccaaaacaacatcaa
aacaaaataaggAGCTGAACATACCACGTTTAAAGTCTTCCATCAGCGAT
CTGGGTACATAGTAAGCAATCAGCGGAAGTATACATAAAGCTGATGTGAA
TCCTGTCCATAGAATGATGCCAGCAAGGGGTCGTCGTCTGTGATGGTCAT
CAGCGAGCTTAAGCAAAGAGGACGGAGCGTTCTAGGACGGGTAAATTTGA
TGTTGACGTCGACGTCGACGCATTTAGAGCAAAATTCATTAAGCAAATTA
ATCTGTAACGCGCgccaaaaatcataacaaatatGGCGTCTTTTCGCGAA
ACAAGAGAGTTGTTGCTCTTAGCTTACAGTCAGAATCTTATTTCTGACGA
AGAATTCCTGATTCTATTTGACCTTTATACAAGCAAAAATCCTGACTTTC
CATTTTGGATTTACAACCCTTTCGATTTGTTGGTTGTGTCTGAAGCAGAA
TGCTGGGCTGAATTCAGAATGTACAGAAATGATGTTATCTTATTGAGAAA
TGTATTGAACATTCCAGACACTGTTAGATGTAAAAACAGAACAATTTGTC
CAGGATTAGAAGCATTTTGCATGTTCCTGAGAAGATTTGCCTACCCATGC
AGATATGGTGATATGATCCCACGTTTTGGTAGACCTGTACCTGAAATTTG
CATGATAACAAATTACATTGTTGAGCATGTTTACAGCCAGTTTGGTAACA
AACTAACCGACCTTAACCCAATAAATCAACCCTGGCTAAGTCCAGTCAAG
CTTCAAGAGTATGCAGATGCTATCCATGCAAAAGGAGCAGCCCTTGAAAA
TTGCTGGGGCTTTGTGGATGGAACAGTTCGTCCCANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NACAACGCCGTTCCAGAGCACTCCCGTACTCTTTGCTTAAGCTCGCTATC
ATAATAAGGCCAGGGATGAAGAACCCAACCTACGAATCGAAACAGAATAA
ACACGTAGACATTACCAATAAACGATGCTATACTGCTTGCTAACATGatg
gaaaaataagaaataaaaagtGTCTTTTTGCGACCGTAGTTATCGGACAC
CCATCCCATGACCAATGCTCCCACCATGAAGAAAACCAATTCCAGAGCGA
ATTGAAATCTCCCATGCTCTCCAACAATTTTGAGTAATCATTCAACAGAA
AGTTCTTTCTTGTTCGCAGGTGTTTCTTCAATGCttatttccgccatttt
gtATTTTGAACCTCAATTTATAGTCTGACAAAAAGTTCATTTTATGCGAA
CTGCAGAACTTGCAGAGAATAAATCATTCTATATATAATGGTGCCATTTG
CAAAAGTACTCGACGAGTCTTGCTATTTTTTGCTCACCAGATGCCAGATC
TCCTCGTTTCAGAATGTGGTACTTACGTTGTGGGAAATTACTAACATGTG
CAACGTTGATCAGTCGACTCAAAAGAATAAAAACAGTTTATTTTTGTCTG
TCCTGACAGTTGGATAGACTACCTGAATTATGCAGCTAAAATTTTAAGTG
ACATGAACTTTATTTAATTGATCGATTTTCATGACTTTTAGTCTTTCTTT
CATAAGATCTTCTTTCAGGTTTCTCCCCTTCCTTAATTTGCCTCAAATTA
AGATCAAATGAATTAAAAATTCCTCATAAAATTTATCACTTAACCCCTTG
ACTACATAATATCTTCAAATTCAAGATATTAATTCTTTGCTCGTTCATCC
AAACGCGTTGAAAAAAAATATTTTACAGTATTTCCCTGTTAAATCTTCCT
GCTATTTGTATTTCAGGAATCGTTGTGTTTGGAAGTTCAAAAGAGGTTAT
CTTGCACCGAAATGATGAAGCACGCTTATTACCAAGAAAACGATTTCGCT
ACCAAATTCCTGGTGATTTTAAAAGAGAGAATTCAACGAGAGAGCTCTTC
AAATCCATTTCTCAAATCCTTGGCTGCACAGAAACAAAGGCGACATTCGA
ACGCTCAATCGCAGCGAGATAAACATTCACCTGGCACTAATAATACGAAC
AATAAAAACGTCAAACTCAAAGCCatacaaaatcatcaaaatgatAAGAA
TCTGAAAAGTGAAAACACCACAAAAGATAAGACTACGCCTTCTCAGCATT
GTCCTGTCTTAGTGACTACAAGCTTGAAAACCGCTTCGAAAAAGACGCCT
AGTCCGCGTAAAGCGAACGACATCGAAAATAACAATGAATTAAATCTAAA
ACACTCGAAGAACATTTCGAACGGTTTGAAACGGAATTCAGAATCGGATA
AAGTTTTAAAGGATATGAGTAGATCTCAACTACGGAAGTCTGAAGGGAGT
TCACCGGAAGTGAAAGGAGCCAGTCGAACCATTCTTGATGTCTCCATTAA
CCAACCTGGGAAAAACCTCCCGGAAATTTGCAGTTCTGTCAATATTAATC
GGTAggccatgttttttttttcattaaacttTCTAAATAAAATGTTTCTA
ATCATTTAACTTTTCTCGAATTCTGATAGTTTTGCTAAGTGAAAAGCTAT
TTTACTGCATTGTGACATCGTAGCAGCAAGGAAAATTAAAGTGGTTCAAT
TGTCGGATGTACTATTCGATTANGCTTACGTTGTGGGAAATTACTAACAT
GTGCAACATTGATCAGTCGAttcaaaagaataaaaacagTTTATTTTTGT
CTGTCCTGACAGTCGGATAGACTACCTGAATTATGcatctaaaattttaa
gtgacaTGAACTTTATTTAATTGATCGATTTTCGTGACTTTTTGTCTTTC
TTTCATAAGATCTTCTTTCAGGTTTCTCCCCTTCCTGCCCTTCCTTAATT
TGCCTCAAATTAAGatcaaatgaattaaaaaaacctCATAATATTTATCA
CTTAACCCCTTGACTACATAGTATCTTCAAATTCAAGATAATAATTCTTT
GCTCGTTCATCCAAACGCgttgaaaaataatattttacgGTATTTCCCTC
TTAAATCTTCTTACTATTTGTATTTCAGGAATCGTTGTGTTTGGAAGTTC
AAAAGAGGTTATCTTGCACCGAAATGATGAAGCACGCTTATTACCAAGAA
AACGATTTCGCTACCAAATTCCTGGTGATTTTAAAAGAGAGAATTCAACG
AGAGAGCTCTTCAAATCCATTTCTCAAATCCTTGGCTGCACAGAAACAAA
GGCGACATTCGAACGCTCAATCGCAGCGAGATAAACATTCACCTGGCACT
AATAATACGAACAATAAAAACGTCAAACTCAAAGCCatacaaaatcatca
aaatgatAAGAATCTGAAAAGTGAAAACACCACAAAAGATAAGACTACGC
CTTCTCAGCATTGTCCTGTCTTAGTGACTACAAGCTTGAAAACCGCTTCG
AAAAAGACGCCTAGTCCACGTAAAGCGAACGACATCGAAAAGAACAATGA
ATTAAATCTAAAACATTCGAAGAATATTTCGAACGGTTTGAAACGGAATT
CAGAATCGGATAAAGTTTTAAAGGATATGAGTAGATCTCAACTACGGAAG
TCTGAAGGAAGTTCACCGGAAGTGAAAGGAGCCAGTCGAACCATTCTTGA
TGTCTCCATTAACCAACCTGGGAAAAACCTCCCGGAAATTTGCAGCTCTG
TCAATATTAATCGGTAGgccatgtttttttcattgaactTTCTAAATAAA
ATGTTTCTAATCATTTAACTCGAATTCTGATAGGTTTGCTAAGTGAAAAG
CTATTTTACTGCATTGTGACATCGTAGCAGCAAGGAAAATTAAAGTGGTT
CAATTGTCGGATGTACTATTCGattattgaattaaaaaatctgATGTAAT
TTGGTGTAATGTAAACAGTCAAATGTATTTAAATTAAGAAATCTACTCAA
AGTCAAACGATGCTGTAGAGATTTGAAATTTATGTAATATAATTTCCAGG
GCACGTGgccatgacgtcatcaaacttAAGAAAGGTGGCGGAGGAACCAG
TCATGGTGGTGGTTCAAAGAAGAGCTCACTCAGTAGCAAACATATTGAAC
ACGAGCCCACTGTACCTTTATATCCGGTTGCAGAAAAAGCCACCTTATTC
ACAGACAAGTCGAGTGAAGAAATCTTGAACAAGTGCAGTAAGAAGAAAGG
AGGAGAGATTGGGTTGCCCAAAGTTTCCGGATTAGTTTTACCCATCGTCA
AACAACAAGAATGTGAGTGGTGATATCTTCTTTTTCCAAAACTTGGGGGT
GGCGGTAATCTTGCAAAATCTATCCGGTATTTCGGATTCCTAAAGTTGAT
TCGGTGTCTGTTATAGACCTATTTGTACGTCGAAATCACGCTAATGAGGA
GATTTCATTataatttttggcaaaatggctaaacaaaaaaagataaatcg
gaaaaaattggtaatgcaaacttttttatccTTAATTTCTAAAATCATGA
CGAAATTCTTTTACTGTATACTTTTTACTTGATTTTCATTCTTAGGTAAA
ACGAACAAAACAAGTCCGACCAGAGGAAGTCGTAAATTGACGGTCGCTCC
AACCATACCACACATTCAAAACATCGATCCCTTTAGTATGCATTTTTCGC
CCAGTAAAGAGGTTTGTTAAAGAATACACTGAAACTCCAACTTAAAAATT
TATAACATTCAAACCTTCATGGAGCTATTTTATGACACAGGGCTAGTGAT
TAGACAGGGCTTACTTAGTGATCACACAGGGCTTGATTTACAGTTTAACA
TAATGTTAACATAATGATTAGTTTAAAGGGAATTTTAGATCAACACGATT
GTGATTAGATCAGTGAAAGATTACAAACCCCTTCCTTCTAATGTTAATCG
TTTTTTATAAACTTTTCGATCTTTTTATCATCCACATTCTTAAATTGTTC
CTAGGTCTCGTTTTCTGGAAGAATATGTTAACATAAACCTTTTTACACTA
CAGTGTTACAAAATTGTGATACAAAGATTTGGAGtttcaatcaaagaaaa
tcatgAAACTCGTGGCGTTGCTAGAAAAGAATGTTTTGAAACAAAGTGAA
TGACGCAAATTCATAATTAACCTCAACAACATGACGTTTTTTCCTTCTTA
AACCTAGGACATGATTCAGAGTCTTAAAAAAGTACGAACTACTAATTGTT
CGTCCTTAGTTTTCATACCCAAATTTATTTCTCCCTTCTTTTTTTTAGCC
AACAACTACAAGGAAATCGAGTCGTGACAATAACTTGCCAGCTGTTTGAT
GGTCCGTATACTTGATAGTTACTTATTCTAATACCAATCTAGAAAtgttc
ctttgaaattcaaatagCCCAAATATTTCACATCACAAATGAACCCTTTA
CTTGGTAACCTTCCAAAGGAACAATGGAATGTCTGACTTTTTGGGTTTAA
ATGTTATGTGAGAGCTAAGGTAAATCTGATTATATGATTAAGCAGAGTTT
AAAAGCTTAAACTGGCCTAAAGGAACTGTTCAAATTTGTTCGATTTAGAA
GATCATACTTGATTGGGTGTTCAACAATTTTACTATAAATGCTTATAGTT
TACATATTGagaattattttgtatttttttgtcccTACAAATATGTATTC
CAATTGTACATAAAAATGATAAGTAATTTTTAAATTAATCTAAATTTTGT
CAATGGCGTTTTCTCTTAGAGTTATAGCCTTCAAGAACTAAATGCTCAGT
TCTATAAAGGTATGATATAATTACTCATCTAGAAGTTCTATAGaacaatt
tcaaattaatttgtGGTTAATTAAAGGGCACCACTTCGTCAATTATATGC
TAATACCTTTCTATTGactggtagttacttgttatatCATAATCATTTGT
TGTCAAGTCCAACTTCTCTTTAACTACCTTCGAAACTTCAAGCTATATTA
GCTTTGCACTATAAATAGGACGTATATTttgactaaattgaaaattgaaa
agccGCATTTAGAGTTGTTAATGTTGAAACCATGTTCCCTGGTTTACCGC
AGCATAATATCTTATTACATAAGCCTTGTATAAGAATTTCtcttagaaaa
atttaaagtatggaactatatatttttttatttcacagtATTGCTTCTCT
AGCTGGACTAAACATATAGTTGGTGCTTTTGCAAGATCAATGTTGCTGAG
TGTTTATAAAATGTCATACTGTATTTGTTTATCGAAATGAGAGATAAATT
AGCTGAATGATGATAAATTCTCAATTGGATAGGTCTGAAATTTTAAGTCT
TCTTGTAAACTAAATCTTGTGAAAAGGCTATCTTTTTATACCCCACAATC
TGTTAGTCAGCTCCATTATATACTATTTGGTTTTGCACCAAGACTTTCTT
GAGAACTGTTTATCATTCCTCTAATTTTGTATATAGTGTATAAAGATTGT
TCATTGTTATTTCCCATGATGCTAGCTTGTTCATAATATTATTCTGCTTA
AActattttacattattttttctgcattttaacatttttataaaGGTTCG
AGTGGTATTTTAATTTGCATTCTAGTTATTAtaatttttgtgtaaaaaag
cctttatttttttcagaaccaTTTTGGTGTTTAGATTGTCTTTCGAAATT
TATTCCCAGGACGTCATTCATTTGGAGTTAGACTAAAATTAACCCACACA
TGATATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013238XLOC_013238Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023546-exon-sc0000456-1491911889:90298..90687TCONS_00023546-exon-sc0000456-1491911889:90298..90687Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1510915933:90298..90687TCONS_00023546-exon-sc0000456-1510915933:90298..90687Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1575043694:90298..90687TCONS_00023546-exon-sc0000456-1575043694:90298..90687Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1491911889:91097..91291TCONS_00023546-exon-sc0000456-1491911889:91097..91291Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1510915933:91097..91291TCONS_00023546-exon-sc0000456-1510915933:91097..91291Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1575043694:91097..91291TCONS_00023546-exon-sc0000456-1575043694:91097..91291Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1491911889:91507..91597TCONS_00023546-exon-sc0000456-1491911889:91507..91597Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1510915933:91507..91597TCONS_00023546-exon-sc0000456-1510915933:91507..91597Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1575043694:91507..91597TCONS_00023546-exon-sc0000456-1575043694:91507..91597Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1491911889:92080..92170TCONS_00023546-exon-sc0000456-1491911889:92080..92170Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1510915933:92080..92170TCONS_00023546-exon-sc0000456-1510915933:92080..92170Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1575043694:92080..92170TCONS_00023546-exon-sc0000456-1575043694:92080..92170Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1491911889:92427..92539TCONS_00023546-exon-sc0000456-1491911889:92427..92539Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1510915933:92427..92539TCONS_00023546-exon-sc0000456-1510915933:92427..92539Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1575043694:92427..92539TCONS_00023546-exon-sc0000456-1575043694:92427..92539Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1491911889:93012..93148TCONS_00023546-exon-sc0000456-1491911889:93012..93148Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1510915933:93012..93148TCONS_00023546-exon-sc0000456-1510915933:93012..93148Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1575043694:93012..93148TCONS_00023546-exon-sc0000456-1575043694:93012..93148Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1491911889:99126..99760TCONS_00023546-exon-sc0000456-1491911889:99126..99760Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1510915933:99126..99760TCONS_00023546-exon-sc0000456-1510915933:99126..99760Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1575043694:99126..99760TCONS_00023546-exon-sc0000456-1575043694:99126..99760Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1491911889:100047..100309TCONS_00023546-exon-sc0000456-1491911889:100047..100309Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1510915933:100047..100309TCONS_00023546-exon-sc0000456-1510915933:100047..100309Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1575043694:100047..100309TCONS_00023546-exon-sc0000456-1575043694:100047..100309Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1491911889:100593..100708TCONS_00023546-exon-sc0000456-1491911889:100593..100708Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1510915933:100593..100708TCONS_00023546-exon-sc0000456-1510915933:100593..100708Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1575043694:100593..100708TCONS_00023546-exon-sc0000456-1575043694:100593..100708Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1491911889:101296..102755TCONS_00023546-exon-sc0000456-1491911889:101296..102755Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1510915933:101296..102755TCONS_00023546-exon-sc0000456-1510915933:101296..102755Clytia hemisphaericaexon
TCONS_00023546-exon-sc0000456-1575043694:101296..102755TCONS_00023546-exon-sc0000456-1575043694:101296..102755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:90298..102755 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.159847	0.168734	0	0.0638869	0.849539	0.248469	1.11855	0.481354	0.825921	0.445623	0.228433	0.687899	0.151619	0.297802	0.0684111	0.0841578	0.184652	0	0.681673	0.253908	1.63192	1.89629	0.326859	0.487346	0.271416	0.242589	0.267106	1.16204	0.33099	0.0882995
Blast
[Close]
BLAST of TCONS_00023546 vs. Swiss-Prot (Human)
Match: CDKL2 (Cyclin-dependent kinase-like 2 OS=Homo sapiens GN=CDKL2 PE=1 SV=1)

HSP 1 Score: 423.705 bits (1088), Expect = 4.467e-135
Identity = 198/325 (60.92%), Postives = 261/325 (80.31%), Query Frame = 1 
Query:  223 MERYENMGLVGEGSYGMVLKCKHKETDQVVAIKKFLESEDDKMVKKIALREIKMLKTLRHENLVNLLEVFRRKKKLFLVFEFVDRTILDDLERFPDGLPDGEVKSISFQVLRGLEFCHSHNVIHRDVKPENILISKSGVVKLCDFGFARTLATGPGEVFTDYVATRWYRAPELLVGDVNYGKAVDIWAVGCLLFEMITGDPLFPGDSDIDQLFHITKALGNLCQRHKDVFHRNPLFTGMKLPNIR-LEKVGKKFGNLSTNLSNLITESLCLEVQKRLSCTEMMKHAYYQENDFATKFLVILKERIQRESSSNPFLKSLAAQKQRR 1194
            ME+YEN+GLVGEGSYGMV+KC++K+T ++VAIKKFLES+DDKMVKKIA+REIK+LK LRHENLVNLLEV ++KK+ +LVFEFVD TILDDLE FP+GL    V+   FQ++ G+ FCHSHN+IHRD+KPENIL+S+SGVVKLCDFGFARTLA  PGEV+TDYVATRWYRAPELLVGDV YGKAVD+WA+GCL+ EM  G+PLFPGDSDIDQL+HI   LGNL  RH+++F++NP+F G++LP I+  E + +++  LS  + +L  + L ++  KR  C E++ H ++Q + FA +F   L+ ++Q+++ +     SL+ + Q R
Sbjct:    1 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLA-APGEVYTDYVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMDGFAERFSQELQLKVQKDARN----VSLSKKSQNR 320
The following BLAST results are available for this feature:
BLAST of TCONS_00023546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDKL24.467e-13560.92Cyclin-dependent kinase-like 2 OS=Homo sapiens GN=... [more]
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