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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023550 ID=TCONS_00023550|Name=TCONS_00023550|organism=Clytia hemisphaerica|type=transcript|length=3072bpRun BLAST on NCBI protein sequence of TCONS_00023550-protein >TCONS_00023550-protein ID=TCONS_00023550-protein|Name=TCONS_00023550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=619bp MERYENMGLVGEGSYGMVLKCKHKETDQVVAIKKFLESEDDKMVKKIALRRun BLAST on NCBI transcript from alignment at sc0000456:90299..102755+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023550 ID=TCONS_00023550|Name=TCONS_00023550|organism=Clytia hemisphaerica|type=transcript|length=12457bp|location=Sequence derived from alignment at sc0000456:90299..102755+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000456:90299..102755+ >TCONS_00023550 ID=TCONS_00023550|Name=TCONS_00023550|organism=Clytia hemisphaerica|type=CDS|length=18600bp|location=Sequence derived from alignment at sc0000456:90299..102755+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023550 vs. Swiss-Prot (Human)
Match: CDKL2 (Cyclin-dependent kinase-like 2 OS=Homo sapiens GN=CDKL2 PE=1 SV=1) HSP 1 Score: 423.705 bits (1088), Expect = 2.415e-136 Identity = 198/325 (60.92%), Postives = 261/325 (80.31%), Query Frame = 3
Query: 222 MERYENMGLVGEGSYGMVLKCKHKETDQVVAIKKFLESEDDKMVKKIALREIKMLKTLRHENLVNLLEVFRRKKKLFLVFEFVDRTILDDLERFPDGLPDGEVKSISFQVLRGLEFCHSHNVIHRDVKPENILISKSGVVKLCDFGFARTLATGPGEVFTDYVATRWYRAPELLVGDVNYGKAVDIWAVGCLLFEMITGDPLFPGDSDIDQLFHITKALGNLCQRHKDVFHRNPLFTGMKLPNIR-LEKVGKKFGNLSTNLSNLITESLCLEVQKRLSCTEMMKHAYYQENDFATKFLVILKERIQRESSSNPFLKSLAAQKQRR 1193
ME+YEN+GLVGEGSYGMV+KC++K+T ++VAIKKFLES+DDKMVKKIA+REIK+LK LRHENLVNLLEV ++KK+ +LVFEFVD TILDDLE FP+GL V+ FQ++ G+ FCHSHN+IHRD+KPENIL+S+SGVVKLCDFGFARTLA PGEV+TDYVATRWYRAPELLVGDV YGKAVD+WA+GCL+ EM G+PLFPGDSDIDQL+HI LGNL RH+++F++NP+F G++LP I+ E + +++ LS + +L + L ++ KR C E++ H ++Q + FA +F L+ ++Q+++ + SL+ + Q R
Sbjct: 1 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLA-APGEVYTDYVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMDGFAERFSQELQLKVQKDARN----VSLSKKSQNR 320 The following BLAST results are available for this feature:
BLAST of TCONS_00023550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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