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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023552 ID=TCONS_00023552|Name=TCONS_00023552|organism=Clytia hemisphaerica|type=transcript|length=1311bp
ATTCTAAGTTCGTTATTTACATTCATAAAATTTATATTGTTAATCATcca
aaaaatatactaaaattaAGATTTATTAAAAAACGAAGAAACAGGCAAAA
AGATTCTTTAGTTACAATATCGAAAGAAAATTAAACTCAAATGAAgaaca
gaaaatcttttaaatattgATCTATAAATAACAAtgttaaaagtgttttt
atttttagttcagGTTACAAGCTAATTTGCTaagcaaaaaattcatttta
taaaaattaacgATTAGTGAACCTTCTAGAATGTTTCGAAAAGTAATAAG
TAAGTATATAGTTGAAAAGATGTTTCCAAGTGTATTGTGTTAATCTCGTT
ACTGAGTATCTAAAGACTAAATAGGTCAGAGTTCTCTCCAATTAAAATAG
ATAAGGCTCTTCGTTATATAAAAGCTCAGATAAAATGAgcatttttacca
aaatttatttgaattttcgTCTAAAGGCGGAAAAGTTGCAACCAGGCAAA
CCAAAGGAATCTTTATTCGTGAgcaaatttaatttgtgaaaaaattatTC
ATTATCAAAAGAACTAATTAGAGATTTTAAAAATAccatcaacaaaagaa
atttcagaACTGTCTTTCACACGCAGAggcttttgattgaaaaatgatTG
TAAATCATGAGACAAATTATTTTTGCAATTCTCAATTTGGTCCAGTCCAT
TTGTTGACGACGTCATCAGATTGTCCCCAAAGATGGGACCAGATAAACAA
TTCAATGATTCGAAAGACTTACATTGAATGTTGACGTCATTATGCTGAGT
CAGTATCTTCGAGATATGATAAAATTGGCATGGTAACATGGTACCGTTGA
TGTCGACAGTATATACCGTATTACTGTTGACTTtcttggtttgttttggt
ggaATGTTAGCTTTCAATTTGTTCAGTGTGGCACTTTCAAAAGGCTCTGG
CGACAACAGAGTTGGCGGAACTCCAGTCATAGGTCCAGATGCTGCACACA
GGAAATTTGCATTTAAGAGGAAGTTGAATAAACCATTACAATTCTTAATT
CGTACTGTTGACTCAGGTCGACTGTCAAGTGAATTCAATTTGGAACGCAA
AGCTCGACGTTGTTGTTGCTCCATCTGAGGGAAATGTTCTTTTTGACTCA
ACCCAATACTATCAAAGAAATCTTCATCACAACTTGTGTTTAGTGAAGAT
GGGGCTTTATCTGAtgattctttgttttgtttggcTTCATCTTCAAATCC
ATATTCGATTTCATCCACACTTTCTTCGTCACGTGTGTAaataaaatcga
aattcaaaccT Run BLAST on NCBI transcript from alignment at sc0000456:128003..129906+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023552 ID=TCONS_00023552|Name=TCONS_00023552|organism=Clytia hemisphaerica|type=transcript|length=1904bp|location=Sequence derived from alignment at sc0000456:128003..129906+ (Clytia hemisphaerica)
ATTCTAAGTTCGTTATTTACATTCATAAAATTTATATTGTTAATCATcca
aaaaatatactaaaattaAGATTTATTAAAAAACGAAGAAACAGGCAAAA
AGATTCTTTAGTTACAATATCGAAAGAAAATTAAACTCAAATGAAgaaca
gaaaatcttttaaatattgATCTATAAATAACAAtgttaaaagtgttttt
atttttagttcagGTTACAAGCTAATTTGCTaagcaaaaaattcatttta
taaaaattaacgATTAGTGAACCTTCTAGAATGTTTCGAAAAGTAATAAG
TAAGTATATAGTTGAAAAGATGTTTCCAAGTGTATTGTGTTAATCTCGTT
ACTGAGTATCTAAAGACTAAATAGGTCAGAGTTCTCTCCAATTAAAATAG
ATAAGGCTCTTCGTTATATAAAAGCTCAGATAAAATGAgcatttttacca
aaatttatttgaattttcgTCTAAAGGCGGAAAAGTTGCAACCAGGCAAA
CCAAAGGAATCTTTATTCGTGAgcaaatttaatttgtgaaaaaattatTC
ATTATCAAAAGAACTAATTAGAGATTTTAAAAATAccatcaacaaaagaa
atttcagaACTGTCTTTCACACGCAGAggcttttgattgaaaaatgatTG
TAAATCATGAGACAAATTATTTTTGCAATTCTCAATTTGGTCCAGTCCAT
TTGTTGACGACGTCATCAGATTGTCCCCAAAGATGGGACCAGATAAACAA
TTCAATGATTCGAAAGACTTACATTGAATGTTGACGTCATTATGCTGAGT
CAGTATCTTCGAGATATGATAAAATTGGCATGGTAACATGGTACCGTTGA
TGTCGACAGTATATACCTAAAATATCAAAGTGATTGCTCATTTCAATACT
ATCCCTGGCTGACATTGTAAAGGGCAAATGAAACCCGTCGTCGCTTACGA
AACCTTAGATATGCACCAATAGAAAATCTTCNACAAATGAAACCTGTCGT
CGCTTGCGAAACCTTAGATATGCACCACTAGAAAatctttcgaaattttc
ttttgattaaatgatATATTTAGAAGATGAGATATTTCAAGAGATAGtag
aagattttgaaaattcttagaaaaatggtgCATATCAATTAAGACAAAGC
AACGAGACTATTCATGGTCGCCTATGGTGATCATTTGAAATAGATATATT
GTAAACTTTTTAGTTAGTACTTCGctcaaagaattttgaaattgagaATA
CAAAAAGGAGAACTAGAAAATCTAATTTACAACCTATTGTGTATCTAACA
AATTACCTTCTCAGGGGAAAGATGGACTTTACAAAACAAATTAGACCGGA
TTCGGTAATGTCTCTTTTTCACCTGACCAAGACCAAAATTTGTGCTTTAA
ACAGtgctaaaaactaaaaatagcaaaaaatggTCTCTCAATGTCAAAAC
ATCACATACCGTATTACTGTTGACTTtcttggtttgttttggtggaATGT
TAGCTTTCAATTTGTTCAGTGTGGCACTTTCAAAAGGCTCTGGCGACAAC
AGAGTTGGCGGAACTCCAGTCATAGGTCCAGATGCTGCACACAGGAAATT
TGCATTTAAGAGGAAGTTGAATAAACCATTACAATTCTTAATTCGTACTG
TTGACTCAGGTCGACTGTCAAGTGAATTCAATTTGGAACGCAAAGCTCGA
CGTTGTTGTTGCTCCATCTGAGGGAAATGTTCTTTTTGACTCAACCCAAT
ACTATCAAAGAAATCTTCATCACAACTTGTGTTTAGTGAAGATGGGGCTT
TATCTGAtgattctttgttttgtttggcTTCATCTTCAAATCCATATTCG
ATTTCATCCACACTTTCTTCGTCACGTGTGTAaataaaatcgaaattcaa
accT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023552-exon-sc0000456-1491911889:128003..128864 | TCONS_00023552-exon-sc0000456-1491911889:128003..128864 | Clytia hemisphaerica | exon |
| TCONS_00023552-exon-sc0000456-1510915933:128003..128864 | TCONS_00023552-exon-sc0000456-1510915933:128003..128864 | Clytia hemisphaerica | exon |
| TCONS_00023552-exon-sc0000456-1575043694:128003..128864 | TCONS_00023552-exon-sc0000456-1575043694:128003..128864 | Clytia hemisphaerica | exon |
| TCONS_00023552-exon-sc0000456-1491911889:129458..129906 | TCONS_00023552-exon-sc0000456-1491911889:129458..129906 | Clytia hemisphaerica | exon |
| TCONS_00023552-exon-sc0000456-1510915933:129458..129906 | TCONS_00023552-exon-sc0000456-1510915933:129458..129906 | Clytia hemisphaerica | exon |
| TCONS_00023552-exon-sc0000456-1575043694:129458..129906 | TCONS_00023552-exon-sc0000456-1575043694:129458..129906 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000456 | supercontig | sc0000456:128003..129906 + |
Blast
The following BLAST results are available for this feature:
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