TCONS_00023569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023569
Unique NameTCONS_00023569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023569 ID=TCONS_00023569|Name=TCONS_00023569|organism=Clytia hemisphaerica|type=transcript|length=2657bp
ATCAATATTGGTTCACTCTTGGAGAGGTATAAAAGTGGTACCAAGAGTTC
TTAGAGCTCACTGAATGTGTCGAAGTCTTCTACTCCATAGAATTCAAAAT
GAAACTCATTGGATTTATCTTTTTGGCCTTGTTAGGCCTCACTTATGCCG
CCCCACAATACCAAGATGGGCAGCTACACATCCCCGATAAATGTTCTGAT
GTCCTTGCTGTCAAAGTTTGTGATAACCTTGAAGCCATTGCCAAGAGATT
AAAATTGAAAGCCGAAGATGTTACCAAAGCTGTTGTCGATGCTGTCAAGA
AAGGAAAGACCAGCAGTGTTGAGATTTACAATGCTGCCAAGGATTTCTTG
ATCAATGAAGTTGCCACAAAGAAATGTGAAGACTTCACTACTGTTGAGAA
CTGCCAAAAACTCAGAAAGGTCGCTGCTTTCATGAAATTGAATGCCGAAA
AAGTTGAGGAATTTGTCCGTAAGGCTGTTGCCGAAGGGGCCGTCCAAGCC
GCCGACATCTATGCCAAGGCTATGGAATACTACAAGAATGAAATCAAAAC
CAAGAAATGCGAAGATTTATTATCTGTCAGTCAATGCACCTACTTGAGAA
ACCTTGCTGGAAAATTGAAAGTCAAATTCGACGATCTTGAAGACGCTATT
AAAGACGCCTACCTTGAAACTCTTGGAGATGCTAAAGCTCTGGTTACCAA
AGTCGTCGCTGTCTTGAAAGATTATGCTTTGAACACCAAATGTGAAGATC
TCTTGAACCCTGACCTTTGCTCCGCTCTCCGACGATTTGCTGCAACCACC
AAAGTTCAATTTCCAGTTTTGATGGAAAAAGCTGTAGACCTTTTGATCTC
TGGATACAGTGCTGGTAAAAGCTTGTTGAATGGAATCTTCAAAGCTGTTG
ACTATTTCTACGATTGTACCGATGTTTTTGACCAATCATCATGTGACAAA
TTGAAGAAAGTTGCTGAATTCATTGGATTTGGTGTTCAAGAAGTTGAAGA
ATTCATCAAGAAATATGTCCCCATTGCTGTTCAAAAAGGAAAAGACCTCA
TCAAAAACTTCCCAGAGATGATGAAGGAATTAGGAAAATACTTGAAGGAC
AAGATCTGTGATAACACTATCCTATGTGATGATGCTCAANTATGTCCCCA
TTGCTGTTCAAAAAGGAAAAGACCTCATCAAAAACTTCCCAGAGATGATG
AAGGAATTAGGAAAATACTTGAAGGACAAGATCTGTGATAACACTATCTT
ATGTGATGATGCTCAATTGAGTGACGAACAATTCATGTTTGTTGATCAAG
TTGGAATCTTCGATTGGGATTTAATCAAACAAAAGATCAAAGAATACATT
GAGATCAAATACCCAGGGCTCCAAGACAAAGTCAAGCAACGAGTTTTGGA
CATTATCAGCAAAGCTACTAGCGTTAGAGATCTTCTCTGGAAAGCTGCCC
AAGAAATTGTCATGGTCGGTGGAGAACACGCTGCTACcattaaacaaatt
ttgaaGGATTTGGTCGCTAACATCAAGAGCATTGTCAATCCACAAACTAC
CTACGATGCTGTTGCCGAAGATGAAATCGCCTTGTTCGATTATGACTTGA
TCAAACAAAAGATCAAAGAATACATTGAGATCAAATACCCAGGACTCCAA
GACAAAGTCAAACAAAAAGTCTTAGATGTTGTCAACAGAGCTACCAACGT
TGCAGATCTTGTCAAAGAATCTTTCAAAGAAATCTGGCAAGTCGGTGGAG
AGCACGCTGCTTTCGTCAAACAAATCTTGAAAGACTTAATTGCTAACATC
AAAAACATCGTCAGCCCATCTGTCCCACAAATCTCATACGATGCTGTCTC
AAGACTCCAAGCTTTGAAAGACAAAATCATGAAATATATCGAAGCCAAAT
ATCCAAAACTTACAGCTGACATCAAAGCCAAGATCCAAAACATCTTCGAC
AAAGCCACCAACATTGGCCAAATCATTGCCAATGCTATCAGTGAATTACT
GAGAGTTCATGGAGATAATGCTGACATTGTGAAACAAATCATCCGTGATT
TGATCAAGAAAGTCAAAGACGAACTTAAAAGTGGAATCTCCAAGAGAAGT
GTCGACTTTGATGAACTCAAGAACAAATTGAAAGAATaTTTGGAAAACAA
GGTACCACAACTTCAAGCTCAAATCAAAGAACAATTGAAGGCTGTTATTG
ATAAAGCTCAAAGCAAATTTCAACTCATTCGAGAATTTATCAAAACTGTC
TGGCAAATGAGCAAAGACAAGAAAGATGAAGTTGTCAAGGTCGTCAAAGA
ATTGATCGAACAATTGAAGAACTTCAACTAAGAAACTGGTGGAAGCTTTT
gtaacaaagatttttaatatgaatttatcttctttgaaagaaaatgaaat
atattgTAAATCGATTGGTTGTTTTCCTTGAAATCTTTGCTTTTAGAAGC
TTATATGGTATCTTGAACAATAATTTAAgcagtttgttatttttaagtaa
ttccaatatattctagtaaatgtcaaaataacaaaaaaacaagcTTCATA
TTATAAGTCTTCTACGATGAATGATTAAATTTAGGGTAATAAATGAATAT
CTTTGTTTGACATTCTGTTTTTGATAAAACGCAGATcaattttcagtttc
ttctCCT
Run BLAST on NCBI

transcript from alignment at sc0000456:191745..197217+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023569 ID=TCONS_00023569|Name=TCONS_00023569|organism=Clytia hemisphaerica|type=transcript|length=5473bp|location=Sequence derived from alignment at sc0000456:191745..197217+ (Clytia hemisphaerica)
ATCAATATTGGTTCACTCTTGGAGAGGTATAAAAGTGGTACCAAGAGTTC
TTAGAGCTCACTGAATGTGTCGAAGTCTTCTACTCCATAGAATTCAAAGT
AAGTATCTCACTTGATCAGTACCCAGTGGTGACCAGTGGTTGGGTAGTTA
AAACACCAAGTACCCTAGCAGCACATGGAACCTATAGTTCTCCAAACAAT
GTTTTGAACCATCACCGAATCCATTGATGTagactttttttgaaatttta
tttctgattctttatttttatttactaaGAATTGTGGAATTTTATAAAAT
CTCGAatcattgaaagtttttgtCTTACAGATTACAATTCAAATATTTAT
TCCATTCTCTTTTAGATGAAACTCATTGGATTTATCTTTTTGGCCTTGTT
AGGCCTCACTTATGCCGCCCCACAATACCAAGATGGGCAGCTACACATCC
CCGATAAATGTTCTGATGTCCTTGCTGTCAAAGTTTGTGATAACCTTGAA
GCCATTGCCAAGAGATTAAAATTGAAAGCCGAAGATGTTACCAAAGCTGT
TGTCGATGCTGTCAAGAAAGGAAAGACCAGCAGTGTTGAGATTTACAATG
CTGCCAAGGATTTCTTGATCAATGAAGTTGCCACAAAGAAATGTGAAGAC
TTCACTACTGTTGAGGTACAGTGACATTGTCCTAAATATCCCTATTCTAA
AATCTTTGCTCTAGCTCATTCTTCCAACTTAAATATCTATCATTTGTGTT
ACATAAATCTTTGTTaaagaaatcttttgaaaaatcttaaagaTTTATAA
TTCTTTCGTCATTTTCAGAACTGCCAAAAACTCAGAAAGGTCGCTGCTTT
CATGAAATTGAATGCCGAAAAAGTTGAGGAATTTGTCCGTAAGGCTGTTG
CCGAAGGGGCCGTCCAAGCCGCCGACATCTATGCCAAGGCTATGGAATAC
TACAAGAATGAAATCAAAACCAAGAAATGCGAAGATTTATTATCTGTCAG
TGTAAGTCACTCAAAATTTGTTTCCTATTGCTTTATAAGTTCGCCTACTT
GGacaagccgtatatgtataaaagttgcgaagcgatccagagcctcctta
attcgcaagttgcaagcaaaacatttatGCCATACAAACACTGTATATTT
AACGGCATTTGTGCAGTCTTTCCGAATATCCTATCATTCGCAAATTTCTC
TATAAGTATAAAAATGACATCTGTAGATTATCTTTCACTGATGAAAAGTG
AAGCTTCAACCgtcctatttttcattttctataataattagcaaaaagtt
taaagaaaaagttttgagaaaCTCCGCTACCTGTATTGTTGAAACCTACT
GCATCTGTATTAAGAGTGGACTATTTTATCCATCACTGGCATTGAATTCT
TCATTTTATCAACCATGTCACTGCCTCAGAGATGTATTAAAATATCCAGC
AATTCAACAAGAATTTTGGAAATCGGAAATTAAACTGATCccgtttttct
ctttcttactTTGAACAATATTTGACGAATCGCATATCACTTAACTTTTT
TTCAGCAATGCACCTACTTGAGAAACCTTGCTGGAAAATTGAAAGTCAAA
TTCGACGATCTTGAAGACGCTATTAAAGACGCCTACCTTGAAACTCTTGG
AGATGCTAAAGCTCTGGTTACCAAAGTCGTCGCTGTCTTGAAAGATTATG
CTTTGAACACCAAATGTGAAGATCTCTTGAACCCTGACgtaaatattatt
ttaaaaattttttcaattttcttactATACTCTATATAGTTTGAACTCAC
ATCAATTTGAAcgaaatttttatctttttttaaaacaacCCTTCATAAAA
GCTAAGTATCCGGGATCTTTCGGCCTTCACCCTACCCTAATTTGTCCGAT
ATCTACGGAATTTGAATATTCATTAATGCAGAGTACATGgaataaacaaa
gaaatatcTCTGGTATACTATAATTACTCAACCTTTGGCATTCCCAACCC
GCGGAATATTTATCGAAATCTAGACATGTTAGGACAAGctaatcataaaa
aaataaattgatatataatatataataaatatttttccatgAACAGCTTT
GCTCCGCTCTCCGACGATTTGCTGCAACCACCAAAGTTCAATTTCCAGTT
TTGATGGAAAAAGCTGTAGACCTTTTGATCTCTGGATACAGTGCTGGTAA
AAGCTTGTTGAATGGAATCTTCAAAGCTGTTGACTATTTCTACGATTGTA
CCGATGTTTTTGACCAATCAGTAAGTGTTCCAACTTATCTCTGACTCTTT
TAGAATCTTTGAAGACACCCATTTGAAGATGTTCTGCTTAAAGTTGCGTC
TTATTTGTATGATGTACTGCATATATGCTTAGCGTTGACCACCTAGAAAC
ACCATATACATCCCTGCATCAGCAACCCGGTGGATAACCCGGTGAAAATA
GTTACCAAAGACGTCCTGGTTTCAAACCAGACTCACTAACGCTACCCTTG
TAGAAGATTTTTGATATCGCACATTCAAACccagtgaatttttttctttt
tttacagtCACCCCGGTGAACTATTTGCTCCTTTCTATTTGATATTTTCT
GTATCTTTTTAAAATAGTCATGTGACAAATTGAAGAAAGTTGCTGAATTC
ATTGGATTTGGTGTTCAAGAAGTTGAAGAATTCATCAAGAAATATGTCCC
CATTGCTGTTCAAAAAGGAAAAGACCTCATCAAAAACTTCCCAGAGATGA
TGAAGGAATTAGGAAAATACTTGAAGGACAAGATCTGTGATAACACTATC
CTATGTGATGATGCTCAANTATGTCCCCATTGCTGTTCAAAAAGGAAAAG
ACCTCATCAAAAACTTCCCAGAGATGATGAAGGAATTAGGAAAATACTTG
AAGGACAAGATCTGTGATAACACTATCTTATGTGATGATGCTCAATTGAG
TGACGAACAATTCATGTTTGTTGATCAAGTTGGAATCTTCGATTGGGATT
TAATCAAACAAAAGATCAAAGAATGTAAGTGAAATGATTTTACTTCTTTG
ATTAGCGACGCTAGCACCCACTCCCAAATGCACCATCTCTCCTGTTAGAT
TTATGTTATTCAAAATCATTGACTAAATGTTGGTAACTCTTCTGGAAAGT
ATATTCTTTCTTAACTGGTTCGTTTAGCCATTGACGCTTGGATTTTGACC
TCGTTGACTGTTTCTTCAATTCTAACTGACTTATTTCTTTTAGACATTGA
GATCAAATACCCAGGGCTCCAAGACAAAGTCAAGCAACGAGTTTTGGACA
TTATCAGCAAAGCTACTAGCGTTAGAGATCTTCTCTGGAAAGCTGCCCAA
GAAATTGTCATGGTCGGTGGAGAACACGCTGCTACcattaaacaaatttt
gaaGGATTTGGTCGCTAACATCAAGAGCATTGTCAATCCACAAACTACCT
ACGATGCTGTTGCCGAAGATGAAATCGCCTTGTTCGATTATGACTTGATC
AAACAAAAGATCAAAGAATGTAAGAAACTTTTTGTTGATTTCGTAAAGTA
GTTCTGTAAACATCATATTTCCACCCGAACTGAGTGCAAATATGCATCGA
GAGAGCATGGGACATGGGAACGTAATAATCACTGTACCATAAAATATGAT
ATGACCATTGAAAAATCACTTGTGTCTTTTTTTCTGGATCGTTATATCAT
AGCAGGCGTAAAAGTTTGAAGTTACTAAATACACTTCTCTCCATTTTCTA
GACATTGAGATCAAATACCCAGGACTCCAAGACAAAGTCAAACAAAAAGT
CTTAGATGTTGTCAACAGAGCTACCAACGTTGCAGATCTTGTCAAAGAAT
CTTTCAAAGAAATCTGGCAAGTCGGTGGAGAGCACGCTGCTTTCGTCAAA
CAAATCTTGAAAGACTTAATTGCTAACATCAAAAACATCGTCAGCCCATC
TGTCCCACAAATCTCATACGATGCTGTCTCAAGACTCCAAGCTTTGAAAG
ACAAAATCATGAAATGTAAGCAGATGCTTATTGTAAATGTTTTAGGAACG
GCCTTCCAGAACAATTGTTCTTTTAATGCGACGTGTGGATAGTATCCTAT
AAATCATGAGTGCGAAGGATTAAAATAGAATCTCAAAACTCCAACTGAAA
CCTGAAAATTTGCGGCTTATTATTGACGATCGGTACATCTTTTTAGTTTT
AGAGTGGTACATTTTTCAGAACCAGGTGGCAAGAATTTTATTTCCATTCC
TCTTGTGAAAAGCCATAATGCCCTTGCAACTTATGTAGAAAGTGACTTGC
TAAACGATAATTACGGAAAACCTTTCCTTATTAGATATCGAAGCCAAATA
TCCAAAACTTACAGCTGACATCAAAGCCAAGATCCAAAACATCTTCGACA
AAGCCACCAACATTGGCCAAATCATTGCCAATGCTATCAGTGAATTACTG
AGAGTTCATGGAGATAATGCTGACATTGTGAAACAAATCATCCGTGATTT
GATCAAGAAAGTCAAAGACGAACTTAAAAGTGGAATCTCCAAGAGAAGTG
TCGACTTTGATGAACTCAAGAACAAATTGAAAGAATGTAAGAAGACTTTT
TCGCGTGTGTTCATGGATCTTTGAAATTAGAATCCCTCAGTTATGATTAT
GATCCCTTTAGAAGTCTTGATTCTCACTTTATTTTCCACGACTTTTTCAA
GAcggaaattatttttaatctagCTCTTCAATAATATACGCTAGCTTGAG
TACCAGCGTAACAGTAGTATTTCAGTGACTTATCgaatagtctagcaagc
tagacgactaatttatacatagtagaaataaagcaaaaagtaaaagtaat
gaatagaacaattttagtcgtctagaaacctttgtgcactaactccaaac
aaaagaaaagtgttaaCGAATGATAATAAACTGcgcttttcattttattt
cagaTTTGGAAAACAAGGTACCACAACTTCAAGCTCAAATCAAAGAACAA
TTGAAGGCTGTTATTGATAAAGCTCAAAGCAAATTTCAACTCATTCGAGA
ATTTATCAAAACTGTCTGGCAAATGAGCAAAGACAAGAAAGATGAAGTTG
TCAAGGTCGTCAAAGAATTGATCGAACAATTGAAGAACTTCAACTAAGAA
ACTGGTGGAAGCTTTTgtaacaaagatttttaatatgaatttatcttctt
tgaaagaaaatgaaatatattgTAAATCGATTGGTTGTTTTCCTTGAAAT
CTTTGCTTTTAGAAGCTTATATGGTATCTTGAACAATAATTTAAgcagtt
tgttatttttaagtaattccaatatattctagtaaatgtcaaaataacaa
aaaaacaagcTTCATATTATAAGTCTTCTACGATGAATGATTAAATTTAG
GGTAATAAATGAATATCTTTGTTTGACATTCTGTTTTTGATAAAACGCAG
ATcaattttcagtttcttctCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013244XLOC_013244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023569-exon-sc0000456-1491911889:191745..191842TCONS_00023569-exon-sc0000456-1491911889:191745..191842Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1510915933:191745..191842TCONS_00023569-exon-sc0000456-1510915933:191745..191842Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1575043694:191745..191842TCONS_00023569-exon-sc0000456-1575043694:191745..191842Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1491911889:192110..192409TCONS_00023569-exon-sc0000456-1491911889:192110..192409Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1510915933:192110..192409TCONS_00023569-exon-sc0000456-1510915933:192110..192409Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1575043694:192110..192409TCONS_00023569-exon-sc0000456-1575043694:192110..192409Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1491911889:192563..192745TCONS_00023569-exon-sc0000456-1491911889:192563..192745Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1510915933:192563..192745TCONS_00023569-exon-sc0000456-1510915933:192563..192745Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1575043694:192563..192745TCONS_00023569-exon-sc0000456-1575043694:192563..192745Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1491911889:193300..193482TCONS_00023569-exon-sc0000456-1491911889:193300..193482Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1510915933:193300..193482TCONS_00023569-exon-sc0000456-1510915933:193300..193482Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1575043694:193300..193482TCONS_00023569-exon-sc0000456-1575043694:193300..193482Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1491911889:193841..194014TCONS_00023569-exon-sc0000456-1491911889:193841..194014Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1510915933:193841..194014TCONS_00023569-exon-sc0000456-1510915933:193841..194014Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1575043694:193841..194014TCONS_00023569-exon-sc0000456-1575043694:193841..194014Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1491911889:194362..194768TCONS_00023569-exon-sc0000456-1491911889:194362..194768Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1510915933:194362..194768TCONS_00023569-exon-sc0000456-1510915933:194362..194768Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1575043694:194362..194768TCONS_00023569-exon-sc0000456-1575043694:194362..194768Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1491911889:194988..195263TCONS_00023569-exon-sc0000456-1491911889:194988..195263Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1510915933:194988..195263TCONS_00023569-exon-sc0000456-1510915933:194988..195263Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1575043694:194988..195263TCONS_00023569-exon-sc0000456-1575043694:194988..195263Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1491911889:195496..195759TCONS_00023569-exon-sc0000456-1491911889:195496..195759Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1510915933:195496..195759TCONS_00023569-exon-sc0000456-1510915933:195496..195759Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1575043694:195496..195759TCONS_00023569-exon-sc0000456-1575043694:195496..195759Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1491911889:196079..196330TCONS_00023569-exon-sc0000456-1491911889:196079..196330Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1510915933:196079..196330TCONS_00023569-exon-sc0000456-1510915933:196079..196330Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1575043694:196079..196330TCONS_00023569-exon-sc0000456-1575043694:196079..196330Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1491911889:196698..197217TCONS_00023569-exon-sc0000456-1491911889:196698..197217Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1510915933:196698..197217TCONS_00023569-exon-sc0000456-1510915933:196698..197217Clytia hemisphaericaexon
TCONS_00023569-exon-sc0000456-1575043694:196698..197217TCONS_00023569-exon-sc0000456-1575043694:196698..197217Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:191745..197217 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	5.11566	7.64416	4.20141	12.3324	0.189302	2.7903	8.8273	13.0474	3.70443	5.56184	0.597581	7.90081	298.359	389.983	0	0	1.36912e-07	2.30679e-10
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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