|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023573 ID=TCONS_00023573|Name=TCONS_00023573|organism=Clytia hemisphaerica|type=transcript|length=5330bpRun BLAST on NCBI protein sequence of TCONS_00023573-protein >TCONS_00023573-protein ID=TCONS_00023573-protein|Name=TCONS_00023573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=826bp MLFWICLLLLNSVTLQAYTSLIISCNQIESFKLAAVYTLHKNQEFSLKCVRun BLAST on NCBI transcript from alignment at sc0000456:224061..238327+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023573 ID=TCONS_00023573|Name=TCONS_00023573|organism=Clytia hemisphaerica|type=transcript|length=14267bp|location=Sequence derived from alignment at sc0000456:224061..238327+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000456:224061..238327+ >TCONS_00023573 ID=TCONS_00023573|Name=TCONS_00023573|organism=Clytia hemisphaerica|type=CDS|length=29772bp|location=Sequence derived from alignment at sc0000456:224061..238327+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023573 vs. Swiss-Prot (Human)
Match: FGFR1 (Fibroblast growth factor receptor 1 OS=Homo sapiens GN=FGFR1 PE=1 SV=3) HSP 1 Score: 286.96 bits (733), Expect = 1.429e-80 Identity = 156/377 (41.38%), Postives = 214/377 (56.76%), Query Frame = 1
Query: 1525 IVVACVLFVALNIFICYYRMQNLDKRYARFLSPLTDYQIKPDDNITEQGIYLPYNPAYEYPRHKLEFIKVLGSGAFGQVWLARGLDVYNWGLDIXXXXXXXXXXXXPSLQEYIXXXXXXXXXXXXXXXFVAVKTLKDDATDAEYKDLASEIKILIYIGKHNNIVNLLGACTKGGSLFAILEYCAHGDLKTFLKNSREHFSQEWKLSTGNLQNAFSVGDAMHFAHQIIKGMAFLHGKKLIHRDLACRNVLLGEHFRIKISDFGLARDIQENDCYMKTTTGMLPVKWMSPEALFDRIYNTKSDVWSFGVVLWEISTLGGTPYPGIPTEDLFSFIDEGYRMPQPEVCPNEIYQVMTQCWQQDEKDRPEFHDLIQTTDQLL 2655
+ V+ ++N + R L L+ +++Y+ LP +P +E PR +L K LG G FGQV LA + GLD +K N + VAVK LK DAT+ + DL SE++++ IGKH NI+NLLGACT+ G L+ I+EY + G+L+ +L+ R + + N + S D + A+Q+ +GM +L KK IHRDLA RNVL+ E +KI+DFGLARDI D Y KTT G LPVKWM+PEALFDRIY +SDVWSFGV+LWEI TLGG+PYPG+P E+LF + EG+RM +P C NE+Y +M CW RP F L++ D+++
Sbjct: 427 VTVSADSSASMNSGVLLVRPSRLSSSGTPMLAGVSEYE-------------LPEDPRWELPRDRLVLGKPLGEGCFGQVVLAEAI-----GLD---------------------------KDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV 758 The following BLAST results are available for this feature:
BLAST of TCONS_00023573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.