TCONS_00023574 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023574
Unique NameTCONS_00023574
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5002

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023574 ID=TCONS_00023574|Name=TCONS_00023574|organism=Clytia hemisphaerica|type=transcript|length=5002bp
ttccactaaaaaaaaacttttgtattTTGGGGTTTAAGGtcgttattttt
cctttttaagtCAGCTTCTTTTCATAGGAGCAAGATGATTACCAGCTGAC
ACACTTGGAAGATCAATATCCAAAACACATCACTGCTTTAGAAACAActg
caaaaatgttgttctgGATATGTCTTTTGCTCTTGAACTCTGTCACTCTC
CAAGCTTACACATCACTCATAATATcATGCAACCAAATTGAATCCTTCAA
ATTGGCTGCTGTTTATACGCTCcataaaaatcaagaattttccttaaaat
gtgtCACAAAAACATCACTCAGTGGAAATAAATATACACATCTCACTTGG
CAAAGAAAACTGTTGACCAGAGGAGTTACAAATTATGTCAATGTCAATAA
CACTAAAACTCTTATCGATAGACATACAAATCATTCTATTTGGGATGAAG
AAGTAATCTCTTGGAAACACTTTTCGTTTTTTGATGCAGGATTATATGTT
TGTACAAATATCAAGTGTAACAAGTCTATAGCTGTTAATCTTCATATGAT
AgAGCCCAAATTGCCACAAGTCAGATTATTTGGAATCAATCCTACACTTG
TGGAAAGTCAATCTCATAATTTGACTTGCTCAGCTTCTGCATCACCTCCA
GCAAATCTCAAATGGATTTCAAAGGGAAATGTTCTGAAAACATGCCAAGG
AGAAACAAACTGTACATTGACAGTGAACGACCACAATGAGAATATCCATC
CCTATCATTATAATTACACATGCAAAGCTTCAAATGAGCTGGGAACAGTT
TCAAAATCAACAATTGTGCATGTCTGGTTTGCTCCTGAGGTAGAACGTTC
CCATGCTGGTATTTCGAGCTCAAGAAAGTTAAAATGTACCTTGAAAAAAG
CTTACCCACCTGCTAAATTCAAATGGCAATATCAACCATTTGGTTGTTTC
AAGCAAAAGAAATGTAGTCCTAATGAAACTTGGGCGGATGTCTCTGAAAA
GCACTACAAGATTGAGCATTTGCAAGAATATGGACACAATGTAACTGAGC
TGACAATCTTGAAACAGAGTGTGAATGCTTATTTTCGATGTTTGGCAATC
AACAAAGCTGGAAGTGACAGTGACGTAAAGAGAGTCCTGATATCACCTCC
AGAGGTACAATATTCAAGCAAGTTGAAATTAGAAGTGATTATAGCGATTG
TGGTAGCATGTGTTTTGTTTGTGGCACTgaacattttcatttgttatTAC
CGGATGCAGAACTTGGATAAACGTTATGCTCGATTCCTCTCACCGTTAAC
AGATTATCAGATTAAACCGGACGATAACATAACAGAACAGGGAATTTATT
TACCATATAATCCGGCCTACGAATACCCTAGACACAAATTAGAGTTCATC
AAAGTGTTGGGATCTGGAGCTTTTGGTCAGGTTTGGCTAGCTCGAGGCTT
AGACGTGTACAACTGGGGACTGGACATCAATCAAAATAATAATACACAAA
AGAAACAGAGGAAACCTAGCCTACAGGAATATATTCGGAAAACAAGTCGA
ACAAACAATAATAAAACCAATTGCACCTCTTTTGTAGCCGTTAAAACTCT
GAAAGATGATGCTACGGACGCGGAATACAAAGATCTAGCGTCTGAAATCA
AAATCCTCATCTACATTGGAAAACACAATAACATTGTCAACTTATTAGGC
GCTTGTACCAAAGGCGGTAGTCTGTTCGCTATACTGGAATATTGCGCCCA
CGGTGACCTGAAAACGTTCTTGAAGAACAGCCGTGAACATTTCTCACAAG
AATGGAAACTATCGACAGGCAATTTACAGAATGCCTTTTCAGTGGGTGAC
GCGATGCATTTTGCACACCAGATCATCAAAGGAATGGCTTTTCTACACGG
TAAAAAGCTTATTCACCGTGATCTTGCATGTCGTAATGTGCTTTTGGGTG
AACATTTCCGTATCAAGATTTCCGACTTCGGACTTGCTCGGGATATTCAA
GAGAATGATTGTTATATGAAGACGACAACCGGCATGCTTCCGGTCAAATG
GATGAGTCCGGAAGCCTTGTTTGACCGGATTTACAACACTAAGTCAGATG
TGTGGTCATTTGGTGTGGTGCTTTGGGAAATCAGTACACTTGGGGGAACA
CCGTACCCTGGCATTCCCACCGAAGATCTATTCTCTTTCATCGACGAAGG
TTACCGCATGCCGCAACCTGAAGTTTGTCCAAATGAAATTTATCAAGTCA
TGACTCAGTGTTGGCAACAAGATGAAAAAGACAGACCAGAATTCCATGAC
CTAATACAAACAACGGACCAATTATTAAGAGCAAAGCTGCCAgAAATCCA
CTATCGGATGTTAGCCAACGACAGCTACATCATTAACGTATCGGACGAAC
GTTTACTGTCAGAGAATGGTGCATCTTATGCTGCCATGTCCAATAATAAC
TCTTCTGCTTCACAAAACAATAATGCTAAGCCAAGATACATCTTAGATAA
CATGATCCGCTTTTTATCACCTATGAAAAGATCGAGACCAACCAGTACGA
CCGAACATCATCTGTTGGGACGTCTCTCTTCGAGTGGCTACAGTGATGTA
GTGATCGACCCTCCGGAAGCTGGCGCGTGCGCGTGAATAACAATTTTATT
GGCTGTCAATATACGTCTACCTGTACAAGAAATCAATTAAGTAATGTTGG
AATTATCTATTCACAGAATCCATTCCTTTTCGGTGCTAGAAATAAAGGTG
GTTGGTGTGAATGCACACATTATGAACCTATATTTATTAGTGGCTTTAAA
ATTACAATCAAAATTGACTTAAGATGTaaacttttggtaaaatcaacata
aaaattATATGTTTGGTAGTACCCTATGTGTTACTCGTTGGTTTCTTTCa
atcgtccaacggttttgttCCAAACAATGATAATTTATCAACATATTTCT
GTGTCATTTTATacttattttaaaaagattaattttgTTTCAGTATTTGA
AATGTCATGTAGATAGATATTAATGTTTACCGTTTAGGTTTCTCGACTTT
TTCGGTTGGTGAGAAGGTAGGATACAACTTAAACTACTCTCTTATTTTAT
GAGAACCAGTAAATCTCTGATGATGTTCTCATCCTATTCTTATTAAACTG
GAGTATAATCAGTTCAATACCCTATTTTTACAAATGTGACCCTTAGTTTG
ATTAAAAATCCAGGCTCAGCATTGCtcctaaatttcttttatttttcggc
ttttttgagcctcgttgctttaaaaaaaattataaaaagagtGTATTGCA
ATACACAGGAATGTAGCCAATGCTGCTAGGTACTATATCTGAAACAAAGA
CTTAGATCTCAGGGAGGGGACAGTTACTGTGTTACTTTCTGTTCGTGCCT
TGATATTAATGTAAATACCgtaatgaaattattttgaaataatcttGAAA
ATATACATATCGTATTGATATCGTGAAAGTTTCAAATACTTCATATCGAT
TGTATTAGATGTGAAATTGTATCTTCGAGAAAAGTTTGAAACTTTTTCGA
TACTTCTTGAATTCTTAACAAATTTTGTACATATCTTAGAATGATCTCTA
ATATATATTAATTATTACGCATAATTATATAACGCaataatatattattt
ttttgtaacataGTTTTAACAGGAGTGTaaattttctaatatttttactt
ttttttcttaacgcaaacgaaaatttttaatttggtCTTAAAATGTTGGG
ATTTTTCATATCTTGTCAGGACCTTCCCAAAATGGTCCCCTTGTTATTTT
CTTCTACTCAAAAATGTCCATACGAGCAAAACATGTCTTTAGGATTCTTC
CATTTCATAAAATGCAAGCTTCATATACTTCAGGTGGTGATCATCCTTCA
TTGTTGATGGATTTTGTTTATTTCTCATGTCATCGTTGTTTTGACTTTTC
ATTCCGCCATTTTTTTTGGCttgcttcttctttttcaattctCGTTCTTC
TTCAGCTTCATGTATTCTCATCAATTGTTgtgattttaaaattaattcaG
GTGTACTTAAACCTCTATCAAATGTTACACTTTGATGACTCGTTTTCGTC
CTTTCATAACTTTCCCTAGGTCTTTCACGAGTGTCTTTTCTTTTGTGTTC
ATTTTTTGTCATGTTTTCATTAGAGCTGGCTAAACTGCTATCCAAGACAT
ACCTTTCTGGATGAAGATTGGCATTTTCCATGATGTCTTTTTTCGATAAC
AAGTATCTAATTTGATCATTTTGTTTCTTAGTTTGTGTAAACGTTTCCTT
CTTCTCTTCTAGCTTAGCTGAACCATTTTCCAAAGTTGTTTCTAGAATaa
tgaaagtattttttaattttccattgttttctatgCTATTTTGAGCAATT
GAATCCAGTTGTGACACTTCATCACTGTGATTCTCATGGATTTTCTTGTA
ATCATTATCCAGCCGGTTTGGTAAATCAGCAAGCATTTTCTTGAAGCATT
CCTGGTTATCAAGTGTTGTTCGTTTAGTGAATTTCAGCTTCGGGAATGAT
TTTGACTCGCCATTTGTGATTTGCCGGTTTTGTTGTAACAATAACTGTTT
CTCACAATTGGTTAGTTCGTATTTTTTATGTAAAGTACTTTTATTACTTT
GCAGCTCTGGTGGACTTCGAGGGCTTTTCGACATTTTTGACTTCTTGTTT
AGCTATCCCCACGTTTATATTTTTATGATCTTTATTTTTCCTCCTCGATA
TAAGCAGTCTCCATTTCTTTTTATATTCCAGCTCTCTCTCTCATATTAAT
ATGTCCAGGTTCCAAaaactatatatatatttttttataaaccaATCAAG
CTCTAAAATCCACTTATATTGTACTAGTAAGTCGAGATGTGATAAATAGT
ACCTTTCAATTCAACCTCTCGCAAATCAATACACACTAGAAATATATTAT
TAGTGCCAACATACTAGAAACATGACGCTTTCTTTTTGTATTCTCAATCG
AG
Run BLAST on NCBI

transcript from alignment at sc0000456:227054..238327+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023574 ID=TCONS_00023574|Name=TCONS_00023574|organism=Clytia hemisphaerica|type=transcript|length=11274bp|location=Sequence derived from alignment at sc0000456:227054..238327+ (Clytia hemisphaerica)
ttccactaaaaaaaaacttttgtattTTGGGGTTTAAGGtcgttattttt
cctttttaagtCAGCTTCTTTTCATAGGAGCAAGATGATTACCAGCTGAC
ACACTTGGAAGGTAAAACAACCATGTTTCTTTGTTGTTAGTAACAGAAAA
TCAGGCTGGGAAATGCACAACGTgcttatgcttataaaataagGCTCAAG
ACCAGTTTCACATCTCAAGGAACTTTATAAAGTTCATTCAATAATTTTTg
attataaaatatttcttacattatatataatattcttaattataaaatat
ttcttataaatatttttccattCATCAGTTTCTTAAGAACAATAAGTTAC
ATTATTGCTTGTAGTGTCATAAAGGTTGATAGTACAGCACAAAGAGTAAT
TAGATCATTAAAAAGTTACTAAATTGTTTGCATGTTTCTTGATGAATTGT
CAATATTTACAGACATGAAAGAAAGGCAGAAGTTTTTGAAAAGGGGAGCT
TGTTTCAATAATAAGGAtatcatttttcataaactttttAATTCATAGCA
TCTGCTAAACACCATCATAGTGGaattcttttttgtttacagtGTACAGT
TTGATGAAGTTGTTATCCTCCTTCTAATACATAAGTAAATAAGTCATCAC
ATCTTTTACAAGTTTACATAGCACCATGTCACAATTTGATATTTACAATG
TGTTAAATTCTCTAATAATCTTTACACTGAATTCATTTAGATCAATATCC
AAAACACATCACTGCTTTAGAAACAActgcaaaaatgttgttctgGATAT
GTCTTTTGCTCTTGAACTCTGTCACTCTCCAAGCTTACACATCACTCATA
ATATGTAAGTTTcacttaaaatatttcaattacttttctttgatttctgt
TCTTTAATTTCTGTGATTGTCTTGCAAGAAAATACATTCAAACATAAGTA
GCTACACACAAGAGCATACTAATACTGagcttttttgtttacttttttag
cATGCAACCAAATTGAATCCTTCAAATTGGCTGCTGTTTATACGCTCcat
aaaaatcaagaattttccttaaaatgtgtCACAAAAACATCACTCAGTGG
AAATAAATATACACATCTCACTTGGCAAAGAAAACTGTTGACCAGAGGAG
TTACAAATTATGTCAATGTCAATAACACTAAAACTCTTATCGATAGACAT
ACAAATCATTCTATTTGGGATGAAGAAGTAATCTCTTGGAAACACTTTTC
GTTTTTTGATGCAGGATTATATGTTTGTACAAATATCAAGTGTAACAAGT
CTATAGCTGTTAATCTTCATATGATAggtatgaaaacattttttgaacat
CATAAAACACCTTAACTTTTGCAGCATCCTAAAAAATCTGCCATTTTCTA
TGAAGATGCAGCTGAATTTCAAATTAATAAGTTTTCCTCAAGCTGTGGAA
TTGACTAAATAGATTaacaaacttttctttttacagAATGCCAGAGGATT
TTTTGAAGTCTCAACTTGTCAGGATTAcaggaaaattgacaaagaaTTAT
TGTTCATTTTGAATCTGATTTTTAATTTCAGAGCCCAAATTGCCACAAGT
CAGATTATTTGGAATCAATCCTACACTTGTGGAAAGTCAATCTCATAATT
TGACTTGCTCAGCTTCTGCATCACCTCCAGCAAATCTCAAATGGATTTCA
AAGGGAAATGTTCTGAAAACATGCCAAGGAGAAACAAACTGTACATTGAC
AGTGAACGACCACAATGAGAATATCCATCCCTATCATTATAATTACACAT
GCAAAGCTTCAAATGAGCTGGGAACAGTTTCAAAATCAACAATTGTGCAT
GTCTGGTGTGAGTACTTTATAagtctaaataaaaaaacaaacattttatt
cAGCACTTTTTGAATATcagtttgcttttattgaatgtttgccccaaaat
tgccaatttcAAAGATATTTATACTGAAATTGTCTTTTGTCTTGCTCAGT
ATCTTCATCCTGCTTTTATTTACCTTTCTTATTGGACTTTGTAGTTGCTC
CTGAGGTAGAACGTTCCCATGCTGGTATTTCGAGCTCAAGAAAGTTAAAA
TGTACCTTGAAAAAAGCTTACCCACCTGCTAAATTCAAATGGCAATATCA
ACCATTTGGTTGTTTCAAGCAAAAGAAATGTAGTCCTAATGAAACTTGGG
CGGATGTCTCTGAAAAGCACTACAAGGTAACATACATTATACATTATAAT
GAAAATCAACCGTTACGCCTAATTATTGAATCACCCAGATTATACAAAGC
TGCCTTCCAACCCAAATCAAGGTGAAGGACGGCTAGAGTTCGTGgttgaa
ttgttttgttttcgtATTTTCAGATTGAGCATTTGCAAGAATATGGACAC
AATGTAACTGAGCTGACAATCTTGAAACAGAGTGTGAATGCTTATTTTCG
ATGTTTGGCAATCAACAAAGCTGGAAGTGACAGTGACGTAAAGAGAGTCT
TGATATCACCTCTAGAGGGTAATCTTTCACATTAATAGAATCTTTTCTAG
CCTCCGATTCCTTTTGTAGTCTCCGATTCCTTTTGTAGTCGAGGCTTTAT
TATCACTACCGCCGATAGTCGGAAGCTAGCTAAACCTTTCTCCACTGTAG
AATGTTTTGAAGGCTAGGATCGCATTTGACTTTAAAGGTTTGTATACAGT
TGTCAGTTGTTATGAAAATAACTAACCAAGATATTCTACATCACTTTAAA
AGGTcatttttggggtttttctAAATAATCCAAtttctttatcattttta
gTACAATATTCAAGCAAGTTGAAATTAGAAGTGATTATAGCGATTGTGGT
AGCATGTGTTTTGTTTGTGGCACTgaacattttcatttgttatTACCGGA
TGCAGAACTTGGATAAACGTTATGCTCGATTCCTCTCACCGTTAACAGAT
TATCAGGTAAGACAATGCTTTGACCCTGTTTGCACGTTATGGCTCCACTT
GCGTAAAAGCTGATTGAAACCTGTTCATTATATCTATTAGCTAATTTTAA
GGATGGCGTTAATTCCAACTTGTAGAAAAACTTCAACGTGTTTTGAAACA
GAACCAATGGAATCATTACTTGTGAAATTTACATGTGGTCTTACACTTAA
TCATTTTCTTTGCATGTCATTTTTCTTGGTGAAACCATAAANCCCAGATT
ATACAAAGCTGCCTTCCAACCCAAATCAAGGTGAAGGACGGCTAGAGTTC
GTGgttgaattgttttgttttcgtATTTTCAGATTGAGCATTTGCAAGAA
TATGGACACAATGTAACTGAGCTGACAATCTTGAAACAGAGTGTGAATGC
TTATTTTCGATGTTTGGCAATCAACAAAGCTGGAAGTGACAGTGACGTAA
AGAGAGTCCTGATATCACCTCCAGAGGGTAATCTTTCACATTAATAGAAT
CTTTTCTAGCCTCCGATTCCTTTTGTAGTCGAGGCTTTATTATCACTACC
GCCGATAGTCAGAAGCTAGCTAAACCTTTCTCCACTGCAGAATTTTTGAA
GGCTAGGATCACATTTGACTTTAAAGGTTTGTATACAGTTGTCAGTTGTT
ATGAAAATAACTAATCGAGATATTCTGCATCACTTTAAAAGGtcattttt
ggggttttctaaATAATCCAAtttctttatcatttttagTACAATATTCA
AGCAAGTTGAAATTAGAAGTGATTATAGCGATTGTGGTAGCATGTGTTTT
GTTTGTGGCACTgaacattttcatttgttatTACCGGATGCAGAACTTGG
ATAAACGTTATGCTCGATTCCTCTCACCGTTAACAGATTATCAGGTAAGA
CAATGCTTTGACCCTGTTTGCACGTTATGGCTCCACTTGCGTAAAAGCTG
ATTGAAACCTGTTCATTATATCTATTAGCTAATTTTAAGGATGGCGTTAA
TTCCAACTTGTAGAAAAACTTCAACATGTTTTGAAACAGAACCAATGGAA
TCATTACTTGTGAAATTTACATGTGGTCTTACACTTAATCATTTTCTTTG
CATGTCATTTTTCTTGGTGAAAccataaattataaaaatatttgtctgCT
GTTTGGCTCCGTATACCCATAAAGTCTCACAAATgatttgatagaaaatt
tgttaAAGATGTGTCACTTTATCACTTCGTATAAATCTATCAAAACGGAT
TTACACTTTAGgagagaaaagtaaaaaaataggtGATGATATATGCTTTT
GACCTTGCTAATTAATGaaacttgtttttttctccAGATTAAACCGGACG
ATAACATAACAGAACAGGGAATTTATTTACCATATAATCCGGCCTACGAA
TACCCTAGACACAAATTAGAGTTCATCAAAGTGTTGGGATCTGGAGCTTT
TGGTCAGGTTTGGCTAGCTCGAGGCTTAGACGTGTACAACTGGGGACTGG
ACATCAATCAAAATAATAATACACAAAAGAAACAGAGGAAACCTAGCCTA
CAGGAATATATTCGGAAAACAAGTCGAACAAACAATAATAAAACCAATTG
CACCTCTTTTGTAGCCGTTAAAACTCTGAAAGGTCAGCACTTGTTTTCGT
TTTGCATGGGAAGTTTTCCATATGGGAAATTAATCTGCTCACTCAATATC
ATttctttttgttgttgagaTGAGAAGATACTTGAGGGTAATCTTATTTT
CGAAATAGAAACGAAAAAAAGCAAGATAAGTTTCTACAAAATAGTTTGTG
ATGAATATACATTATCTCTTTTTTCGTGGAAACTACTCGTTCCTATTGAA
AGACTAATAATCCTTTTGACCTTGAAGCAAACTTCTTTTTATCACGTGTT
CCTCGAAAGGAAACCTCAAGAATTATACGTGCGCCTTTGCTGAATTTTAA
AGGACAACATTTAATGTATTTCCTACCATTTGTTTACaaagcattttttg
agaaaaaaaaacaactttcttcccCTCTCGCGCAAAAATAGATTTTGGGA
AATTCTTTTGTCAACAGGCGCGCCCCCTTTCTATATCATTTTCTACTATA
TGtccaatgggcttttccagaaatttttctgcccccccccccttattgaA
GGATTTTTTTCGAGCTCCACAGCCCCCTGGAAGTCTTAAAAGGTAAAGAC
CCTGGATATCCGTGCATCTTGTTCTGTAcctcctggatatcctctcCCTT
TTATAAGATCCCAGTCCTTGGATGTGAGATAGCATTGAACCCCATGGAtc
tccgatatcctcaacaaaAGGCACGAACTATTTCTGGAAAGCCCAATCCG
AGTAATAAAACCAGAGGATTCTTTACTTTTGATGGAATCAGTTTGATATG
AAATCAAATGTTTTACTGTTGAAATGTTTTATTACAGATGATGCTACGGA
CGCGGAATACAAAGATCTAGCGTCTGAAATCAAAATCCTCATCTACATTG
GAAAACACAATAACATTGTCAACTTATTAGGCGCTTGTACCAAAGGCGGT
AGTCTGTTCGCTATACTGGAATATTGCGCCCACGGTGACCTGAAAACGTT
CTTGAAGAACAGCCGTGAACATTTCTCACAAGAATGGAAACTATCGACAG
GCAATTTACAGAATGCCTTTTCAGTGGGTGACGCGATGCATTTTGCACAC
CAGATCATCAAAGGAATGGCTTTTCTACACGGTAAAAAGGTAGGAGTTAT
TGGTTATGNCCACCAGATCATCAAAGGGATGGCCTTTCTACACGGTAAAA
AGGTAGGAGTTATTGGTTATGACCGATCTTAAGTGGGTGGGTACTTAACA
TTAGAATTCAGCAATTTCTATGATAAGAATGATATTCCTCATCGATTTTT
TTTGTCGGCGGTCCTAAAGCACgctcatttttttttcataaagcgTGTTG
CACCGAATTTGATGATTGAGGAGaaagaaagagagagagagtttTACTTC
CGCCTGTAACAATTCCGTGCTAATTTCCTTCGTAATAAGAGAGGGGAGAT
AGAATAGTCAATCTTCCAAATCTCTCGTGAGAATATTTGCTTTGAAGACA
ATTTCAgcttatttttgatatttcattgATGCGGTGATGACTTATTACAC
CATGTTGTTATTTGTGTACGTGTACGGTTTTTTATTGTAAAACGTTCGAA
ATAAtgtatgacgtcattttatcagCTGATTCATTTCTCAAGGGTATAAT
TATCAAGTTAATGAGAGTGACAATTTATACCTGTCTACTTAATTCTTATC
GGAACATCAATAGTAATGACAATGAATTCGAGTGCCCGAGGCTAAAATTA
AATCAGAAACATCAGAAGTATTGAGATGTCTCACAACTTTTAAATTTACA
GAAGCTGTAGGTTTTGATCTAGAAAGCATGCTTTCTCACACACCATACAC
CCATACAATGAATGTGCTTTTCTTATAACGAGAAAAAAGCTGATGAAAGA
TATGATATTTTTTACACCAATTTCAGAACGCgtgaaatgaaatatttatt
ttctattAGCACTGAGCATCAATGCTTTGAAGGTTTTCGCACGTATATTA
TTGCGTCCCTTATTTTGTTAACGTTTCGCGCTTTACCCTTCATGCTCGTT
ATTACATACTCAATAAAATATCCAGAAACTCGGGTCTCGGAAGCGTTCTT
TCGGGATTCTCTCAAGATTATATCACCAgttataaattaacctttgtctg
ttcgtccgtccatCTGTAACCAGCTTTTCTGGAGatcggctcattatttt
tttctgatgttttttgGCACGAAGATGCAGTATGGCAACGCCcgaattgt
gacggagcccgattttcaaaaaatattttccggccgaaatagccggaagt
atgccggaaaacctgtttttttttgcattttttagagattttaccatcag
ttttttctgattttttctgacggaaatcgccgtttttacagattttcttg
gccttttttctttataaattgctttatttattcacacaaaaacattattg
ataacaatgcccacgatcaagcatgattcaattgtcaatgaaactgattt
ttgcacCTGGAACCTTCTATTGATTACTTGATCATTTCTTTATAGAAGAA
GGTATTTCATGGTGATGCCCAAACTTTTGCATCGTTCGATTAccgaaaaa
aacatttttttcgagcTGGAACTTCTTAAAATCGCCGTAACAGCCGAAAA
ACGGCGCAAAACgagtttcattgatttttttaattacacTCGactgattt
tcatgattttttgtacaGTTAAGCAAACTAGTTATTCCCAAATTGAAAGG
GACcccaatttcaaagaaaaaaatagtttcGTGTCGCCAGATCcagaaat
gtcccgaaaaaaagtggTTTTTCGGGAATTcttcgagattttctcatttt
tttctgatgttttgtttattttgaatttaatgattTTCTGTTGATCAGCC
AGGTTGGTCAATGAATGATCACTTGTTTTGCTTCTTCTTTCTAGCTTATT
CACCGTGATCTTGCATGTCGTAATGTGCTTTTGGGTGAACATTTCCGTAT
CAAGATTTCCGACTTCGGACTTGCTCGGGATATTCAAGAGAATGATTGTT
ATATGAAGACGACAACCGGCATGCTTCCGGTCAAATGGATGAGTCCGGAA
GCCTTGTTTGACCGGATTTACAACACTAAGTCAGATGTGTAAGTTTGTGT
TTTAGCGGTTTTGAGTGATTTCAATgtttagatattttttcaaaagtcca
tTTCTCGTTTGGAAAGGGTTTTAATGTAAAGTAATTGTACTTTTTTTCGA
CTTTTGGGACCTTCAACTTATCAACTATCCTTGTCTCAATTTGAATGGGA
TTTATATCCTTGTTCCTCGTCTTctcgaccaaaatttcaatttctattAT
GAGTATTTCCACAATTCAACGTCAGGTGGTCATTTGGTGTGGTGCTTTGG
GAAATCAGTACACTTGGGGGAACACCGTACCCTGGCATTCCCACCGAAGA
TCTATTCTCTTTCATCGACGAAGGTTACCGCATGCCGCAACCTGAAGTTT
GTCCAAATGAAATTTATCAAGTCATGACTCAGTGTTGGCAACAAGATGAA
AAAGACAGACCAGAATTCCATGACCTAATACAAACAACGGACCAATTATT
AAGAGCAAAGCTGCCAGTGAGTTTCAATGAACTAATTCTTGGATAAGCTT
CACTTCTTTGCAAAATTCATATTAAGTTGATACAAGCCTATCGTAGCTTC
TTATAAGTGCCTTCTTTTTTTCCTACATGTACAACCGGGTTTAAAAGGAG
CCAAGACGAATACAGACAGGTGTCCCTATTTGAAAAGGTTTCCGAACAGG
CAAACAATTCTTACAACAAAAACTGTCTTCATTGAATCTTACGATGACAA
tgataatgtttatttttcatatttcaaggAAATCCACTATCGGATGTTAG
CCAACGACAGCTACATCATTAACGTATCGGACGAACGTTTACTGTCAGAG
AATGGTGCATCTTATGCTGCCATGTCCAATAATAACTCTTCTGCTTCACA
AAACAATAATGCTAAGCCAAGATACATCTTAGATAACATGATCCGCTTTT
TATCACCTATGAAAAGATCGAGACCAACCAGGTaagtctgtctgtctgtc
tgtctgtctgtctgtgaaaatataaaattctttGGGGTAGCCTTGATACT
GGCTAGAGCGTTATTCGTTATTCTTAAGTTGATTTTTTAGgccttggaat
tttcaaaattaaaacttatgattttatttctttaattaATAGACTCTCTA
TCTATCTTACATTTCAGTACGACCGAACATCATCTGTTGGGACGTCTCTC
TTCGAGTGGCTACAGTGATGTAGTGATCGACCCTCCGGAAGCTGGCGCGT
GCGCGTGAATAACAATTTTATTGGCTGTCAATATACGTCTACCTGTACAA
GAAATCAATTAAGTAATGTTGGAATTATCTATTCACAGAATCCATTCCTT
TTCGGTGCTAGAAATAAAGGTGGTTGGTGTGAATGCACACATTATGAACC
TATATTTATTAGTGGCTTTAAAATTACAATCAAAATTGACTTAAGATGTa
aacttttggtaaaatcaacataaaaattATATGTTTGGTAGTACCCTATG
TGTTACTCGTTGGTTTCTTTCaatcgtccaacggttttgttCCAAACAAT
GATAATTTATCAACATATTTCTGTGTCATTTTATacttattttaaaaaga
ttaattttgTTTCAGTATTTGAAATGTCATGTAGATAGATATTAATGTTT
ACCGTTTAGGTTTCTCGACTTTTTCGGTTGGTGAGAAGGTAGGATACAAC
TTAAACTACTCTCTTATTTTATGAGAACCAGTAAATCTCTGATGATGTTC
TCATCCTATTCTTATTAAACTGGAGTATAATCAGTTCAATACCCTATTTT
TACAAATGTGACCCTTAGTTTGATTAAAAATCCAGGCTCAGCATTGCtcc
taaatttcttttatttttcggcttttttgagcctcgttgctttaaaaaaa
attataaaaagagtGTATTGCAATACACAGGAATGTAGCCAATGCTGCTA
GGTACTATATCTGAAACAAAGACTTAGATCTCAGGGAGGGGACAGTTACT
GTGTTACTTTCTGTTCGTGCCTTGATATTAATGTAAATACCgtaatgaaa
ttattttgaaataatcttGAAAATATACATATCGTATTGATATCGTGAAA
GTTTCAAATACTTCATATCGATTGTATTAGATGTGAAATTGTATCTTCGA
GAAAAGTTTGAAACTTTTTCGATACTTCTTGAATTCTTAACAAATTTTGT
ACATATCTTAGAATGATCTCTAATATATATTAATTATTACGCATAATTAT
ATAACGCaataatatattatttttttgtaacataGTTTTAACAGGAGTGT
aaattttctaatatttttacttttttttcttaacgcaaacgaaaattttt
aatttggtCTTAAAATGTTGGGATTTTTCATATCTTGTCAGGACCTTCCC
AAAATGGTCCCCTTGTTATTTTCTTCTACTCAAAAATGTCCATACGAGCA
AAACATGTCTTTAGGATTCTTCCATTTCATAAAATGCAAGCTTCATATAC
TTCAGGTGGTGATCATCCTTCATTGTTGATGGATTTTGTTTATTTCTCAT
GTCATCGTTGTTTTGACTTTTCATTCCGCCATTTTTTTTGGCttgcttct
tctttttcaattctCGTTCTTCTTCAGCTTCATGTATTCTCATCAATTGT
TgtgattttaaaattaattcaGGTGTACTTAAACCTCTATCAAATGTTAC
ACTTTGATGACTCGTTTTCGTCCTTTCATAACTTTCCCTAGGTCTTTCAC
GAGTGTCTTTTCTTTTGTGTTCATTTTTTGTCATGTTTTCATTAGAGCTG
GCTAAACTGCTATCCAAGACATACCTTTCTGGATGAAGATTGGCATTTTC
CATGATGTCTTTTTTCGATAACAAGTATCTAATTTGATCATTTTGTTTCT
TAGTTTGTGTAAACGTTTCCTTCTTCTCTTCTAGCTTAGCTGAACCATTT
TCCAAAGTTGTTTCTAGAATaatgaaagtattttttaattttccattgtt
ttctatgCTATTTTGAGCAATTGAATCCAGTTGTGACACTTCATCACTGT
GATTCTCATGGATTTTCTTGTAATCATTATCCAGCCGGTTTGGTAAATCA
GCAAGCATTTTCTTGAAGCATTCCTGGTTATCAAGTGTTGTTCGTTTAGT
GAATTTCAGCTTCGGGAATGATTTTGACTCGCCATTTGTGATTTGCCGGT
TTTGTTGTAACAATAACTGTTTCTCACAATTGGTTAGTTCGTATTTTTTA
TGTAAAGTACTTTTATTACTTTGCAGCTCTGGTGGACTTCGAGGGCTTTT
CGACATTTTTGACTTCTTGTTTAGCTATCCCCACGTTTATATTTTTATGA
TCTTTATTTTTCCTCCTCGATATAAGCAGTCTCCATTTCTTTTTATATTC
CAGCTCTCTCTCTCATATTAATATGTCCAGGTTCCAAaaactatatatat
atttttttataaaccaATCAAGCTCTAAAATCCACTTATATTGTACTAGT
AAGTCGAGATGTGATAAATAGTACCTTTCAATTCAACCTCTCGCAAATCA
ATACACACTAGAAATATATTATTAGTGCCAACATACTAGAAACATGACGC
TTTCTTTTTGTATTCTCAATCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013247XLOC_013247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023574-exon-sc0000456-1491911889:227054..227164TCONS_00023574-exon-sc0000456-1491911889:227054..227164Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:227054..227164TCONS_00023574-exon-sc0000456-1510915933:227054..227164Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:227054..227164TCONS_00023574-exon-sc0000456-1575043694:227054..227164Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:227794..227907TCONS_00023574-exon-sc0000456-1491911889:227794..227907Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:227794..227907TCONS_00023574-exon-sc0000456-1510915933:227794..227907Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:227794..227907TCONS_00023574-exon-sc0000456-1575043694:227794..227907Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:228054..228380TCONS_00023574-exon-sc0000456-1491911889:228054..228380Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:228054..228380TCONS_00023574-exon-sc0000456-1510915933:228054..228380Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:228054..228380TCONS_00023574-exon-sc0000456-1575043694:228054..228380Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:228635..228910TCONS_00023574-exon-sc0000456-1491911889:228635..228910Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:228635..228910TCONS_00023574-exon-sc0000456-1510915933:228635..228910Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:228635..228910TCONS_00023574-exon-sc0000456-1575043694:228635..228910Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:229098..229279TCONS_00023574-exon-sc0000456-1491911889:229098..229279Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:229098..229279TCONS_00023574-exon-sc0000456-1510915933:229098..229279Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:229098..229279TCONS_00023574-exon-sc0000456-1575043694:229098..229279Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:230336..230480TCONS_00023574-exon-sc0000456-1491911889:230336..230480Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:230336..230480TCONS_00023574-exon-sc0000456-1510915933:230336..230480Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:230336..230480TCONS_00023574-exon-sc0000456-1575043694:230336..230480Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:230743..230897TCONS_00023574-exon-sc0000456-1491911889:230743..230897Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:230743..230897TCONS_00023574-exon-sc0000456-1510915933:230743..230897Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:230743..230897TCONS_00023574-exon-sc0000456-1575043694:230743..230897Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:231341..231635TCONS_00023574-exon-sc0000456-1491911889:231341..231635Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:231341..231635TCONS_00023574-exon-sc0000456-1510915933:231341..231635Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:231341..231635TCONS_00023574-exon-sc0000456-1575043694:231341..231635Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:232441..232742TCONS_00023574-exon-sc0000456-1491911889:232441..232742Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:232441..232742TCONS_00023574-exon-sc0000456-1510915933:232441..232742Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:232441..232742TCONS_00023574-exon-sc0000456-1575043694:232441..232742Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:234548..234741TCONS_00023574-exon-sc0000456-1491911889:234548..234741Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:234548..234741TCONS_00023574-exon-sc0000456-1510915933:234548..234741Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:234548..234741TCONS_00023574-exon-sc0000456-1575043694:234548..234741Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:234979..235219TCONS_00023574-exon-sc0000456-1491911889:234979..235219Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:234979..235219TCONS_00023574-exon-sc0000456-1510915933:234979..235219Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:234979..235219TCONS_00023574-exon-sc0000456-1575043694:234979..235219Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:235482..235684TCONS_00023574-exon-sc0000456-1491911889:235482..235684Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:235482..235684TCONS_00023574-exon-sc0000456-1510915933:235482..235684Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:235482..235684TCONS_00023574-exon-sc0000456-1575043694:235482..235684Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1491911889:235871..238327TCONS_00023574-exon-sc0000456-1491911889:235871..238327Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1510915933:235871..238327TCONS_00023574-exon-sc0000456-1510915933:235871..238327Clytia hemisphaericaexon
TCONS_00023574-exon-sc0000456-1575043694:235871..238327TCONS_00023574-exon-sc0000456-1575043694:235871..238327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:227054..238327 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.690122	0.044761	0.0171304	0.0190778	15.9299	12.1844	19.9707	25.3165	28.4934	25.6751	37.488	37.2148	3.62893	4.07709	2.81436	3.78315	1.42814	0.690915	6.07405	4.08019	1.74162	0.776723	1.48238	1.68211	3.36913	3.13254	2.81892	0.63462	0.236551	0.549766
Blast
[Close]
BLAST of TCONS_00023574 vs. Swiss-Prot (Human)
Match: FGFR1 (Fibroblast growth factor receptor 1 OS=Homo sapiens GN=FGFR1 PE=1 SV=3)

HSP 1 Score: 286.96 bits (733), Expect = 1.082e-80
Identity = 156/377 (41.38%), Postives = 214/377 (56.76%), Query Frame = 3 
Query: 1197 IVVACVLFVALNIFICYYRMQNLDKRYARFLSPLTDYQIKPDDNITEQGIYLPYNPAYEYPRHKLEFIKVLGSGAFGQVWLARGLDVYNWGLDIXXXXXXXXXXXXPSLQEYIXXXXXXXXXXXXXXXFVAVKTLKDDATDAEYKDLASEIKILIYIGKHNNIVNLLGACTKGGSLFAILEYCAHGDLKTFLKNSREHFSQEWKLSTGNLQNAFSVGDAMHFAHQIIKGMAFLHGKKLIHRDLACRNVLLGEHFRIKISDFGLARDIQENDCYMKTTTGMLPVKWMSPEALFDRIYNTKSDVWSFGVVLWEISTLGGTPYPGIPTEDLFSFIDEGYRMPQPEVCPNEIYQVMTQCWQQDEKDRPEFHDLIQTTDQLL 2327
            + V+     ++N  +   R   L       L+ +++Y+             LP +P +E PR +L   K LG G FGQV LA  +     GLD                            +K N  + VAVK LK DAT+ +  DL SE++++  IGKH NI+NLLGACT+ G L+ I+EY + G+L+ +L+  R    +     + N +   S  D +  A+Q+ +GM +L  KK IHRDLA RNVL+ E   +KI+DFGLARDI   D Y KTT G LPVKWM+PEALFDRIY  +SDVWSFGV+LWEI TLGG+PYPG+P E+LF  + EG+RM +P  C NE+Y +M  CW      RP F  L++  D+++
Sbjct:  427 VTVSADSSASMNSGVLLVRPSRLSSSGTPMLAGVSEYE-------------LPEDPRWELPRDRLVLGKPLGEGCFGQVVLAEAI-----GLD---------------------------KDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV 758
The following BLAST results are available for this feature:
BLAST of TCONS_00023574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGFR11.082e-8041.38Fibroblast growth factor receptor 1 OS=Homo sapien... [more]
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