TCONS_00023585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023585
Unique NameTCONS_00023585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023585 ID=TCONS_00023585|Name=TCONS_00023585|organism=Clytia hemisphaerica|type=transcript|length=1984bp
tttcttccttttctGCATTTTCAATCATACAGGATACGTTTACTGAAAAT
TCTTCCTTCGTGTTCCTTTTTTTGGGACCAAGAAATTCAATTTATCAGTT
AACCAGTAAAAGAAATTAATCAAAACACAAAGAAAGGGAACTCGAATCTT
GTCGAAGCTCAAAATCATTTAGGTGTCTCGTTTCGCTTCTTTTTGAGAGA
CAAACacaaaaagtgaagaagaaattgGTACTGGAAAACAAACCAGGTTG
ACGAGAAAGAGCAAAAAGAAAGATGCTGGAGAAATCAATTCTAATATATC
AACAAAAGAACTTGTAAGTTCTTAACTACGATACTTAACAACCATGGTTT
TTGATTGCAGTTTCGGATTGGGTTATTTGCCAGTATTATGGAGTTTTTTC
ACCATAGCTGCACTAGCTGTATCTTACATAATGGCTGTAATGGAAAACCA
CGTTTATCCTTTCCTACCGTCAATCAGTGCCACCGGATCAAATATTCCTG
AATCTAACATATTCTCCTTACTAATGAACGTCTCCATAATATTAGCAGCA
TCCAACTATTTCACACGCTATTTTCAATGTCAACACCAAGCAAGACATTG
TGGAGAGAATAGAGAATTGATATACCGGTATAACCAGTTTTCTTTGGTGG
TTTCAATTGTCAGCTTGGGTGGTGCACTCCTGGTTGCAAATATCCAAGCA
AGAAAAGAATTCTACCTTTTGGAAGTGCACGATGCTGGAGCAGTCATCTT
CTTCACGTTCACCTCCATTTACTTCTGGTTACAAACATACATCAGTTTCA
AGACAGCCTTATACGGTCTCTACTCCTCATGGCTTTGTCATTTGAGATTC
TTTTTGACATTCTGTTTATCTCTTTGCTCTGGTGTATACTTCGTGACAGC
CGCTATATCATCATATAGCTTCCGCAAGCATCATCAATATTATAATTCAT
TGGCAAATCTACAGCCCGGTGACGAGGGTTATACTTTACACGTGGTCAGT
AACGCCTCAGAATGGTTAGCTTTTCTCATTATCATGGGGTCgagtttgac
attttttgatgaatttcaacAAGTGATTATGTTGATCGATTGTCAAGAGA
AATCACCCACCATTATTTCGTATGATGGCATTGGAGAGTACgaagaaatg
aaattgaatcTGTATGATGACGAAGCTAAAAGATAGATAGGTCTGGTAAG
GACCATTAGGGTAAACGAGTGAATCGCACACAGGTCGTGCATCAGGGCCC
TTCAACATGACCGATCCAAAGAGGTGAACCTCTCGACTGACAACGAACTG
CCACAAAAAACACCGAAAGATTATTAATTAACGGTGGGAGAACAAATAGA
TGAAGTTAACAAACGAAAGATTTTAACCTCGTCCTCAAGAATTTGGATCA
ATGGAGGAAGTTACAGTAACAAAAAACTCTCGCACAAACAGAATTGCCAG
CAATTTATCAGCAAATTATTGAGCAACAGTAATCCAAAAGTGGGTGAGAA
CAAGATTCCAGAGTGGAGATTCAGTTTCGAACATCATCAGTTTGGGCAGA
GAAAATACTACTTACATATTTTACCATAAATCTATTGtaaattgatattt
tattgagtattttcagaattcaTTTCAGTGTAATATAAATGGGGGTTAAA
ATATCTAACGAAATTCGCTATCGTAAAAGGTATCTGTAATTGCCAGAGAT
CTCATTTGATTCTGTATTATGTACATCCTTTAGCTTTTAGCCAATTTTTT
ATCGAGTTTATTCTCATAACAATAAGAACCTGTAAAGCTAAGGCTTCACT
GGTGATTTTTTAGGCGGAATGAATTGTTAACGTGTATCCTTTGCCCAATC
TTATGACGGTTGAGTAAAACCAAAATACGCTGTAACATGGATAGtagttt
ttcatgttttattaaGTTACGTTATTTCTGCCATTATACAgggaaaaaaa
atattcgaacatgattctgagtagaaggttgttg
Run BLAST on NCBI

protein sequence of TCONS_00023585-protein

>TCONS_00023585-protein ID=TCONS_00023585-protein|Name=TCONS_00023585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MVFDCSFGLGYLPVLWSFFTIAALAVSYIMAVMENHVYPFLPSISATGSN
IPESNIFSLLMNVSIILAASNYFTRYFQCQHQARHCGENRELIYRYNQFS
LVVSIVSLGGALLVANIQARKEFYLLEVHDAGAVIFFTFTSIYFWLQTYI
SFKTALYGLYSSWLCHLRFFLTFCLSLCSGVYFVTAAISSYSFRKHHQYY
NSLANLQPGDEGYTLHVVSNASEWLAFLIIMGSSLTFFDEFQQVIMLIDC
QEKSPTIISYDGIGEYEEMKLNLYDDEAKR
Run BLAST on NCBI

transcript from alignment at sc0000456:50767..53098-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023585 ID=TCONS_00023585|Name=TCONS_00023585|organism=Clytia hemisphaerica|type=transcript|length=2332bp|location=Sequence derived from alignment at sc0000456:50767..53098- (Clytia hemisphaerica)
TTTCTTCCTTTTCTGCATTTTCAATCATACAGGATACGTTTACTGAAAAT
TCTTCCTTCGTGTTCCTTTTTTTGGGACCAAGAAATTCAATTTATCAGTT
AACCAGTAAAAGAAATTAATCAAAACACAAAGAAAGGGAACTCGAATCTT
GTCGAAGCTCAAAATCATTTAGGTGTCTCGTTTCGCTTCTTTTTGAGAGA
CAAACACAAAAAGTGAAGAAGAAATTGGTACTGGAAAACAAACCAGGTTG
ACGAGAAAGAGCAAAAAGAAAGATGCTGGAGAAATCAATTCTAATATATC
AACAAAAGAACTTGTAAGTTCTTAACTACGATACTTAACAACCATGGTTT
TTGATTGCAGTTTCGGATTGGGTTATTTGCCAGTATTATGGAGTTTTTTC
ACCATAGCTGCACTAGCTGTATCTTACATAATGGCTGTAATGGAAAACCA
CGTTTATCCTTTCCTACCGTCAATCAGTGCCACCGGATCAAATATTCCTG
AATCTAACATATTCTCCTTACTAATGAACGTCTCCATAATATTAGCAGCA
TCCAACTATTTCACACGCTATTTTCAATGTCAACACCAAGCAAGACATTG
TGGAGAGAATAGAGAATTGATATACCGGTATAACCAGTTTTCTTTGGTGG
TTTCAATTGTCAGCTTGGGTGGTGCACTCCTGGTTGCAAATATCCAAGCA
AGAAAAGTAAGTCCAACATACAGAGTGTCCCATATTAGAAATTCCTCAAG
ATTTCCTAAAAAACTCTATTGTTTCGATCTTAATTATTTTTTGGGATATT
TTTCGTGACACTAGCTAGCCTTACCCTTTGCACACAAGTCCCCAAGTCAA
ACCTTCAAGCACCATGACTCCAAAATAAATTCTCAACCACAGAGATATTA
ACATTAGACTTACTCAAAAACAAATTTCTCAATCTTCTTATAGGAATTCT
ACCTTTTGGAAGTGCACGATGCTGGAGCAGTCATCTTCTTCACGTTCACC
TCCATTTACTTCTGGTTACAAACATACATCAGTTTCAAGACAGCCTTATA
CGGTCTCTACTCCTCATGGCTTTGTCATTTGAGATTCTTTTTGACATTCT
GTTTATCTCTTTGCTCTGGTGTATACTTCGTGACAGCCGCTATATCATCA
TATAGCTTCCGCAAGCATCATCAATATTATAATTCATTGGCAAATCTACA
GCCCGGTGACGAGGGTTATACTTTACACGTGGTCAGTAACGCCTCAGAAT
GGTTAGCTTTTCTCATTATCATGGGGTCGAGTTTGACATTTTTTGATGAA
TTTCAACAAGTGATTATGTTGATCGATTGTCAAGAGAAATCACCCACCAT
TATTTCGTATGATGGCATTGGAGAGTACGAAGAAATGAAATTGAATCTGT
ATGATGACGAAGCTAAAAGATAGATAGGTCTGGTAAGGACCATTAGGGTA
AACGAGTGAATCGCACACAGGTCGTGCATCAGGGCCCTTCAACATGACCG
ATCCAAAGAGGTGAACCTCTCGACTGACAACGAACTGCCACAAAAAACAC
CGAAAGATTATTAATTAACGGTGGGAGAACAAATAGATGAAGTTAACAAA
CGAAAGATTTTAACCTCGTCCTCAAGAATTTGGATCAATGGAGGAAGTTA
CAGTAACAAAAAACTCTCGCACAAACAGAATTGCCAGCAATTTATCAGCA
AATTATTGAGCAACAGTAATCCAAAAGTGGGTGAGAACANTTGGATCAAT
GGAGGAAATTACAGTAACAAAAAACTCTCGCACAAACAGAATTGCCAGCA
ATTTATCAGCAAATTATTGAGCAACAGAAATCCAAAAGTGGGTGAGAACA
AGATTCCAGAGTGGAGATTCAGTTTCGAACATCATCAGTTTGGGCAGAGA
AAATACTACTTACATATTTTACCATAAATCTATTGTAAATTGATATTTTA
TTGAGTATTTTCAGAATTCATTTCAGTGTAATATAAATGGGGGTTAAAAT
ATCTAACGAAATTCGCTATCGTAAAAGGTATCTGTAATTGCCAGAGATCT
CATTTGATTCTGTATTATGTACATCCTTTAGCTTTTAGCCAATTTTTTAT
CGAGTTTATTCTCATAACAATAAGAACCTGTAAAGCTAAGGCTTCACTGG
TGATTTTTTAGGCGGAATGAATTGTTAACGTGTATCCTTTGCCCAATCTT
ATGACGGTTGAGTAAAACCAAAATACGCTGTAACATGGATAGTAGTTTTT
CATGTTTTATTAAGTTACGTTATTTCTGCCATTATACAGGGAAAAAAAAT
ATTCGAACATGATTCTGAGTAGAAGGTTGTTG

Coding sequence (CDS) from alignment at sc0000456:50767..53098-

>TCONS_00023585 ID=TCONS_00023585|Name=TCONS_00023585|organism=Clytia hemisphaerica|type=CDS|length=1686bp|location=Sequence derived from alignment at sc0000456:50767..53098- (Clytia hemisphaerica)
GAATTCTACCTTTTGGAAGTGCACGATGCTGGAGCAGTCATCTTCTTCAC
GTTCACCTCCATTTACTTCTGGTTACAAACATACATCAGTTTCAAGACAG
CCTTATACGGTCTCTACTCCTCATGGCTTTGTCATTTGAGATTCTTTTTG
ACATTCTGTTTATCTCTTTGCTCTGGTGTATACTTCGTGACAGCCGCTAT
ATCATCATATAGCTTCCGCAAGCATCATCAATATTATAATTCATTGGCAA
ATCTACAGCCCGGTGACGAGGGTTATACTTTACACGTGGTCAGTAACGCC
TCAGAATGGTTAGCTTTTCTCATTATCATGGGGTCGAGTTTGACATTTTT
TGATGAATTTCAACAAGTGATTATGTTGATCGATTGTCAAGAGAAATCAC
CCACCATTATTTCGTATGATGGCATTGGAGAGTACGAAGAAATGAAATTG
AATCTGTATGATGACGAAGCTAAAAGATAGATGGTTTTTGATTGCAGTTT
CGGATTGGGTTATTTGCCAGTATTATGGAGTTTTTTCACCATAGCTGCAC
TAGCTGTATCTTACATAATGGCTGTAATGGAAAACCACGTTTATCCTTTC
CTACCGTCAATCAGTGCCACCGGATCAAATATTCCTGAATCTAACATATT
CTCCTTACTAATGAACGTCTCCATAATATTAGCAGCATCCAACTATTTCA
CACGCTATTTTCAATGTCAACACCAAGCAAGACATTGTGGAGAGAATAGA
GAATTGATATACCGGTATAACCAGTTTTCTTTGGTGGTTTCAATTGTCAG
CTTGGGTGGTGCACTCCTGGTTGCAAATATCCAAGCAAGAAAAGAATTCT
ACCTTTTGGAAGTGCACGATGCTGGAGCAGTCATCTTCTTCACGTTCACC
TCCATTTACTTCTGGTTACAAACATACATCAGTTTCAAGACAGCCTTATA
CGGTCTCTACTCCTCATGGCTTTGTCATTTGAGATTCTTTTTGACATTCT
GTTTATCTCTTTGCTCTGGTGTATACTTCGTGACAGCCGCTATATCATCA
TATAGCTTCCGCAAGCATCATCAATATTATAATTCATTGGCAAATCTACA
GCCCGGTGACGAGGGTTATACTTTACACGTGGTCAGTAACGCCTCAGAAT
GGTTAGCTTTTCTCATTATCATGGGGTCGAGTTTGACATTTTTTGATGAA
TTTCAACAAGTGATTATGTTGATCGATTGTCAAGAGAAATCACCCACCAT
TATTTCGTATGATGGCATTGGAGAGTACGAAGAAATGAAATTGAATCTGT
ATGATGACGAAGCTAAAAGATAGATGGTTTTTGATTGCAGTTTCGGATTG
GGTTATTTGCCAGTATTATGGAGTTTTTTCACCATAGCTGCACTAGCTGT
ATCTTACATAATGGCTGTAATGGAAAACCACGTTTATCCTTTCCTACCGT
CAATCAGTGCCACCGGATCAAATATTCCTGAATCTAACATATTCTCCTTA
CTAATGAACGTCTCCATAATATTAGCAGCATCCAACTATTTCACACGCTA
TTTTCAATGTCAACACCAAGCAAGACATTGTGGAGAGAATAGAGAATTGA
TATACCGGTATAACCAGTTTTCTTTGGTGGTTTCAATTGTCAGCTTGGGT
GGTGCACTCCTGGTTGCAAATATCCAAGCAAGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013253XLOC_013253Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023585-proteinTCONS_00023585-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023585-exon-sc0000456-1575043694:52393..53098TCONS_00023585-exon-sc0000456-1575043694:52393..53098Clytia hemisphaericaexon
TCONS_00023585-exon-sc0000456-1575043694:51361..52155TCONS_00023585-exon-sc0000456-1575043694:51361..52155Clytia hemisphaericaexon
TCONS_00023585-exon-sc0000456-1575043694:50767..51249TCONS_00023585-exon-sc0000456-1575043694:50767..51249Clytia hemisphaericaexon
TCONS_00023585-exon-sc0000456-1510915933:52393..53098TCONS_00023585-exon-sc0000456-1510915933:52393..53098Clytia hemisphaericaexon
TCONS_00023585-exon-sc0000456-1510915933:51361..52155TCONS_00023585-exon-sc0000456-1510915933:51361..52155Clytia hemisphaericaexon
TCONS_00023585-exon-sc0000456-1510915933:50767..51249TCONS_00023585-exon-sc0000456-1510915933:50767..51249Clytia hemisphaericaexon
TCONS_00023585-exon-sc0000456-1491911889:52393..53098TCONS_00023585-exon-sc0000456-1491911889:52393..53098Clytia hemisphaericaexon
TCONS_00023585-exon-sc0000456-1491911889:51361..52155TCONS_00023585-exon-sc0000456-1491911889:51361..52155Clytia hemisphaericaexon
TCONS_00023585-exon-sc0000456-1491911889:50767..51249TCONS_00023585-exon-sc0000456-1491911889:50767..51249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:50767..53098 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0199875	0.0194909	0	0.0221407	0	0.0638987	8.01748	8.27569	8.00045	6.46748	4.96124	6.20318	8.10875	6.07418	0.907963	0.742968	2.53576	3.44493	19.0587	25.7909	8.92816	9.0773	4.2626	6.27136	4.69966	5.93719	5.24181	4.79688	0.15546	0.113013
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019402Frag1/DRAM/Sfk1
Blast
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BLAST of TCONS_00023585 vs. Swiss-Prot (Human)
Match: DRAM1 (DNA damage-regulated autophagy modulator protein 1 OS=Homo sapiens GN=DRAM1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.263e-27
Identity = 81/248 (32.66%), Postives = 120/248 (48.39%), Query Frame = 2 
Query:  365 GLGYLPVLWSFFTIAALAVSYIMAVMENHVYPFLPSISATGSNIPESNIFSLLMNVSIILAASNYFTRYFQCQHQARHCGENRELIYRYNQFSLVVSIVSLGGALLVANIQARKEFYLLEVHDAGAVIFFTFTSIYFWLQTYISFKTALYGLYSSW----LCHLRFFLTFCLSLCSGVYFVTAAISSYSFRKHHQYYNSLANLQPGDEGYTLHVVSNASEWLAFLIIMGSSLTFFDEFQQVIMLIDCQ 1096
            G+ ++P L   ++ AA  +SY++AV+  HV PFLP IS TG+  PES IF  ++N S  L A+  +TRY   Q Q + C  +  +   +N  SLV+ +V   G  +VAN Q   E  +  VHD GA++ F    +Y  LQ+ IS+K+        W     CH+R  ++     C+ V  +    S  S  K            P ++ Y  HVVS   EW      +   LTF  +FQ V + I  +
Sbjct:    7 GMAFVPFLLVTWSSAAFIISYVVAVLSGHVNPFLPYISDTGTTPPESGIFGFMINFSAFLGAATMYTRYKIVQKQNQTCYFSTPV---FNLVSLVLGLVGCFGMGIVANFQ---ELAVPVVHDGGALLAFVCGVVYTLLQSIISYKSC-----PQWNSLSTCHIRMVIS--AVSCAAVIPMIVCASLISITKLEW--------NPREKDYVYHVVSAICEWTVAFGFIFYFLTFIQDFQSVTLRISTE 233
The following BLAST results are available for this feature:
BLAST of TCONS_00023585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DRAM18.263e-2732.66DNA damage-regulated autophagy modulator protein 1... [more]
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