TCONS_00023596 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023596
Unique NameTCONS_00023596
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023596 ID=TCONS_00023596|Name=TCONS_00023596|organism=Clytia hemisphaerica|type=transcript|length=331bp
aaaaaacgtgtaatgcaAATTTGGGCTTTAGtggatatttttttaatatt
tttaaatttgtacatATAAAGCTTTTTTACACACTGTTTATCCAATAACG
CTTCATACTGTCCCCTCTTTTGCGATTCTCTTTCTTATTTTGCTTCTAAA
ATATTTGAGCTAGCGCAAGGAAACCGCAAACTTTctcaaagaaatttaaa
aaatttatcttaCGTAGGTTCTTTATTTTTCTGACCAGGTTTTCTAAGCA
GCACACCTCCGTCGATCAGCCAGGGTAGCCCCCAGGTATTAAAAGCTGTA
AATATTAGTTAGATTATTCTAGCCATTAAGG
Run BLAST on NCBI

transcript from alignment at sc0000456:177386..177716

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023596 ID=TCONS_00023596|Name=TCONS_00023596|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at sc0000456:177386..177716 (Clytia hemisphaerica)
CCTTAATGGCTAGAATAATCTAACTAATATTTACAGCTTTTAATACCTGG
GGGCTACCCTGGCTGATCGACGGAGGTGTGCTGCTTAGAAAACCTGGTCA
GAAAAATAAAGAACCTACGtaagataaattttttaaatttctttgagAAA
GTTTGCGGTTTCCTTGCGCTAGCTCAAATATTTTAGAAGCAAAATAAGAA
AGAGAATCGCAAAAGAGGGGACAGTATGAAGCGTTATTGGATAAACAGTG
TGTAAAAAAGCTTTATatgtacaaatttaaaaatattaaaaaaatatcca
CTAAAGCCCAAATTtgcattacacgtttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013262XLOC_013262Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023596-exon-sc0000456-1491911889:177386..177716TCONS_00023596-exon-sc0000456-1491911889:177386..177716Clytia hemisphaericaexon
TCONS_00023596-exon-sc0000456-1510915933:177386..177716TCONS_00023596-exon-sc0000456-1510915933:177386..177716Clytia hemisphaericaexon
TCONS_00023596-exon-sc0000456-1575043694:177386..177716TCONS_00023596-exon-sc0000456-1575043694:177386..177716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:177386..177716 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.165122	0	0.436595	1.56624	0	0	0	0.411413	0.333418	0	0	0	0	0.425541	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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