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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023598 ID=TCONS_00023598|Name=TCONS_00023598|organism=Clytia hemisphaerica|type=transcript|length=1875bp
AATGAGAAAAAAGTCATGTTTACAAAAGGATCACCAAGGTAATTTCTTTC
TTGTTAGTAAATACTTGAGTAATAAAATAAGCTtcgtattttgaaaaata
aaagacagCACTGTATATTTTGGTGTTCATGTactaaaagttttttgatt
tgttATCTATCATACTCTTGTTGAAATGTGTTTGAAGTGTTTCAATACGT
CTATTGAAGGGAGACCAAAATTATATCGAAAGCTGGCACTTTTGGTACCC
ATCGGCATATATGTTTTTATAACTCTAGTATCTTTGTTTTCATATTTGCC
TGAACTTCTTGCCAGAGCCAGAGCTCTTAGCGGCACATTAAACTGCACCT
GTACAAGTGTCTTTGATTGTAATAGTACTATTGGTTTTAACTGTAGAATA
GACATTGCAGAAGATGCTGAATCAAATTATTTACGTTTGTTGATACCATT
GGTTAGTTTACTTTTTCTTCCGATcgctattttcattttaaaatataCAT
ACCTATGCATCACATCACATNAACACAATGAACCTTTAGGAAAACTTCTA
AACGAACTGTACACCTCTATAACAGAAATAGTTGACCGTGAAGCAATGGA
AGAATATGCAAAACAATACCTTGGTAAATATTTGGAAGAATTGAGTCAGT
GTGACAACTTTGGTAATGATATGACCTTTATGATGGCTGGGAGTGTTGCT
GAATCTTTCTGCTTGCCATTCTATCCTGGTAGTGTAATAAACTATACACA
TGCCAATATATCAGATTTTGATATAATGTTGACTTCCAAAACTGCATCAG
CTAGTTTTGAAAGAAATAACAATTCTAAATATTATGTCGTGTATGATGAG
GGATTCCTTGACAGAAGTTTTGTGTATCTTTtggacaaagaaaaaaatga
acagtTTTCTCCGAGACTTCTAAAGTTGGATTTCAAGAAAACTGCTTTAA
AAATGAAACCTAATGATtttaaatcacaaaaaagtttgtcaaGGTATTTA
ATGGAAATATATTGTTGTTCTTGTATGGAAgttattgaaatcaaaattag
tgGTCCTGCAATTACAATTATAGATCCTTATCTTTCATCGAAAGGTTTCT
ACTCTGACATTACGTTTGCTATGTATTGTAATGAGTGGCCTGGTATGGTT
TCTGACTGGGAACGACGTCCCAAAAAATGGCCAAAGCCACAAGACGTCGA
AAGAATTGCTAATTTAGGATGTTTTCTTGTACCAAAGTCCCAAGCACTTA
GTGACCGAGAGGATATGACTTGgagaatttcattttcaaaaagtgaagtt
GAATTAGCAAACTTAATGCCTCCTGTTGCTAAAATGTGCTTTATGGGATT
GAAAGCTATAATAAGGGATCAATTTGCTAAATTTCCTCATATAATATCCG
GTTACTGctttaagtcaatttttttgtacaatttGGAAAAAACTGATCCG
GAAATATGGCTGTCTCGAAGCGAGGAGAATATTTCGagatgttttgatat
tttactgGATGAAGTGATCAGCACGTTTGAAAATGGATTATGTCCTCACT
TTTGGATACCCCGCATCGATCTATTCAAAGAATACTCAGGTGGAACACTT
AGTGCGGCAACGACCGTGTTAAAGAAAGCAAAAGAATCACCTACCTTGTA
CATTGAACCTTTCCCTAAAGGTTACTTGGAaagctttccaaaaattgaCC
CAATAAAAGATGATACTGAGTGTGAAATGGACCAGCTCGTCTGAAGATTT
TTCACTTCACTTTCATTTCAAATCCATcttaatttttaacaaaaagaaat
cttgtacttttttatatttttatatcatACACGTGaagaaaaaactataa
gaacGTAAGGCTTCTATtcttaaat Run BLAST on NCBI protein sequence of TCONS_00023598-protein >TCONS_00023598-protein ID=TCONS_00023598-protein|Name=TCONS_00023598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
MCLKCFNTSIEGRPKLYRKLALLVPIGIYVFITLVSLFSYLPELLARARA
LSGTLNCTCTSVFDCNSTIGFNCRIDIAEDAESNYLRLLIPLVSLLFLPI
AIFILKYTYLCITSHXHNEPLGKLLNELYTSITEIVDREAMEEYAKQYLG
KYLEELSQCDNFGNDMTFMMAGSVAESFCLPFYPGSVINYTHANISDFDI
MLTSKTASASFERNNNSKYYVVYDEGFLDRSFVYLLDKEKNEQFSPRLLK
LDFKKTALKMKPNDFKSQKSLSRYLMEIYCCSCMEVIEIKISGPAITIID
PYLSSKGFYSDITFAMYCNEWPGMVSDWERRPKKWPKPQDVERIANLGCF
LVPKSQALSDREDMTWRISFSKSEVELANLMPPVAKMCFMGLKAIIRDQF
AKFPHIISGYCFKSIFLYNLEKTDPEIWLSRSEENISRCFDILLDEVIST
FENGLCPHFWIPRIDLFKEYSGGTLSAATTVLKKAKESPTLYIEPFPKGY
LESFPKIDPIKDDTECEMDQLV Run BLAST on NCBI transcript from alignment at sc0000456:204218..206092 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023598 ID=TCONS_00023598|Name=TCONS_00023598|organism=Clytia hemisphaerica|type=transcript|length=1875bp|location=Sequence derived from alignment at sc0000456:204218..206092 (Clytia hemisphaerica)
atttaagaATAGAAGCCTTACgttcttatagttttttcttCACGTGTatg
atataaaaatataaaaaagtacaagatttctttttgttaaaaattaagAT
GGATTTGAAATGAAAGTGAAGTGAAAAATCTTCAGACGAGCTGGTCCATT
TCACACTCAGTATCATCTTTTATTGGGtcaatttttggaaagcttTCCAA
GTAACCTTTAGGGAAAGGTTCAATGTACAAGGTAGGTGATTCTTTTGCTT
TCTTTAACACGGTCGTTGCCGCACTAAGTGTTCCACCTGAGTATTCTTTG
AATAGATCGATGCGGGGTATCCAAAAGTGAGGACATAATCCATTTTCAAA
CGTGCTGATCACTTCATCcagtaaaatatcaaaacatctCGAAATATTCT
CCTCGCTTCGAGACAGCCATATTTCCGGATCAGTTTTTTCCaaattgtac
aaaaaaattgacttaaagCAGTAACCGGATATTATATGAGGAAATTTAGC
AAATTGATCCCTTATTATAGCTTTCAATCCCATAAAGCACATTTTAGCAA
CAGGAGGCATTAAGTTTGCTAATTCaacttcactttttgaaaatgaaatt
ctcCAAGTCATATCCTCTCGGTCACTAAGTGCTTGGGACTTTGGTACAAG
AAAACATCCTAAATTAGCAATTCTTTCGACGTCTTGTGGCTTTGGCCATT
TTTTGGGACGTCGTTCCCAGTCAGAAACCATACCAGGCCACTCATTACAA
TACATAGCAAACGTAATGTCAGAGTAGAAACCTTTCGATGAAAGATAAGG
ATCTATAATTGTAATTGCAGGACcactaattttgatttcaataacTTCCA
TACAAGAACAACAATATATTTCCATTAAATACCttgacaaacttttttgt
gatttaaaATCATTAGGTTTCATTTTTAAAGCAGTTTTCTTGAAATCCAA
CTTTAGAAGTCTCGGAGAAAactgttcatttttttctttgtccaAAAGAT
ACACAAAACTTCTGTCAAGGAATCCCTCATCATACACGACATAATATTTA
GAATTGTTATTTCTTTCAAAACTAGCTGATGCAGTTTTGGAAGTCAACAT
TATATCAAAATCTGATATATTGGCATGTGTATAGTTTATTACACTACCAG
GATAGAATGGCAAGCAGAAAGATTCAGCAACACTCCCAGCCATCATAAAG
GTCATATCATTACCAAAGTTGTCACACTGACTCAATTCTTCCAAATATTT
ACCAAGGTATTGTTTTGCATATTCTTCCATTGCTTCACGGTCAACTATTT
CTGTTATAGAGGTGTACAGTTCGTTTAGAAGTTTTCCTAAAGGTTCATTG
TGTTNATGTGATGTGATGCATAGGTATGtatattttaaaatgaaaatagc
gATCGGAAGAAAAAGTAAACTAACCAATGGTATCAACAAACGTAAATAAT
TTGATTCAGCATCTTCTGCAATGTCTATTCTACAGTTAAAACCAATAGTA
CTATTACAATCAAAGACACTTGTACAGGTGCAGTTTAATGTGCCGCTAAG
AGCTCTGGCTCTGGCAAGAAGTTCAGGCAAATATGAAAACAAAGATACTA
GAGTTATAAAAACATATATGCCGATGGGTACCAAAAGTGCCAGCTTTCGA
TATAATTTTGGTCTCCCTTCAATAGACGTATTGAAACACTTCAAACACAT
TTCAACAAGAGTATGATAGATaacaaatcaaaaaacttttagtACATGAA
CACCAAAATATACAGTGctgtcttttatttttcaaaatacgaAGCTTATT
TTATTACTCAAGTATTTACTAACAAGAAAGAAATTACCTTGGTGATCCTT
TTGTAAACATGACTTTTTTCTCATT Coding sequence (CDS) from alignment at sc0000456:204218..206092 >TCONS_00023598 ID=TCONS_00023598|Name=TCONS_00023598|organism=Clytia hemisphaerica|type=CDS|length=1569bp|location=Sequence derived from alignment at sc0000456:204218..206092 (Clytia hemisphaerica)
TCAGACGAGCTGGTCCATTTCACACTCAGTATCATCTTTTATTGGGtcaa
tttttggaaagcttTCCAAGTAACCTTTAGGGAAAGGTTCAATGTACAAG
GTAGGTGATTCTTTTGCTTTCTTTAACACGGTCGTTGCCGCACTAAGTGT
TCCACCTGAGTATTCTTTGAATAGATCGATGCGGGGTATCCAAAAGTGAG
GACATAATCCATTTTCAAACGTGCTGATCACTTCATCcagtaaaatatca
aaacatctCGAAATATTCTCCTCGCTTCGAGACAGCCATATTTCCGGATC
AGTTTTTTCCaaattgtacaaaaaaattgacttaaagCAGTAACCGGATA
TTATATGAGGAAATTTAGCAAATTGATCCCTTATTATAGCTTTCAATCCC
ATAAAGCACATTTTAGCAACAGGAGGCATTAAGTTTGCTAATTCaacttc
actttttgaaaatgaaattctcCAAGTCATATCCTCTCGGTCACTAAGTG
CTTGGGACTTTGGTACAAGAAAACATCCTAAATTAGCAATTCTTTCGACG
TCTTGTGGCTTTGGCCATTTTTTGGGACGTCGTTCCCAGTCAGAAACCAT
ACCAGGCCACTCATTACAATACATAGCAAACGTAATGTCAGAGTAGAAAC
CTTTCGATGAAAGATAAGGATCTATAATTGTAATTGCAGGACcactaatt
ttgatttcaataacTTCCATACAAGAACAACAATATATTTCCATTAAATA
CCttgacaaacttttttgtgatttaaaATCATTAGGTTTCATTTTTAAAG
CAGTTTTCTTGAAATCCAACTTTAGAAGTCTCGGAGAAAactgttcattt
ttttctttgtccaAAAGATACACAAAACTTCTGTCAAGGAATCCCTCATC
ATACACGACATAATATTTAGAATTGTTATTTCTTTCAAAACTAGCTGATG
CAGTTTTGGAAGTCAACATTATATCAAAATCTGATATATTGGCATGTGTA
TAGTTTATTACACTACCAGGATAGAATGGCAAGCAGAAAGATTCAGCAAC
ACTCCCAGCCATCATAAAGGTCATATCATTACCAAAGTTGTCACACTGAC
TCAATTCTTCCAAATATTTACCAAGGTATTGTTTTGCATATTCTTCCATT
GCTTCACGGTCAACTATTTCTGTTATAGAGGTGTACAGTTCGTTTAGAAG
TTTTCCTAAAGGTTCATTGTGTTNATGTGATGTGATGCATAGGTATGtat
attttaaaatgaaaatagcgATCGGAAGAAAAAGTAAACTAACCAATGGT
ATCAACAAACGTAAATAATTTGATTCAGCATCTTCTGCAATGTCTATTCT
ACAGTTAAAACCAATAGTACTATTACAATCAAAGACACTTGTACAGGTGC
AGTTTAATGTGCCGCTAAGAGCTCTGGCTCTGGCAAGAAGTTCAGGCAAA
TATGAAAACAAAGATACTAGAGTTATAAAAACATATATGCCGATGGGTAC
CAAAAGTGCCAGCTTTCGATATAATTTTGGTCTCCCTTCAATAGACGTAT
TGAAACACTTCAAACACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023598-exon-sc0000456-1491911889:204218..206092 | TCONS_00023598-exon-sc0000456-1491911889:204218..206092 | Clytia hemisphaerica | exon |
| TCONS_00023598-exon-sc0000456-1510915933:204218..206092 | TCONS_00023598-exon-sc0000456-1510915933:204218..206092 | Clytia hemisphaerica | exon |
| TCONS_00023598-exon-sc0000456-1575043694:204218..206092 | TCONS_00023598-exon-sc0000456-1575043694:204218..206092 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000456 | supercontig | sc0000456:204218..206092 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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