TCONS_00023601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023601
Unique NameTCONS_00023601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023601 ID=TCONS_00023601|Name=TCONS_00023601|organism=Clytia hemisphaerica|type=transcript|length=639bp
ctcaaaaatgtcatcaataatttttaaaaagagtcagtgatagagaatcg
taACATAAAGTTTGCATAAAgatttgtctattatttcgattccattgaag
taacattagcttaattaatagtttagtaataaCATTTGGGAATCACGTag
aagatttattttgaaagaaactcatttcatttcaattttttgaaacatgt
atactgatacagtctgctagctAGACACGTAAGAGGTTGatactttcttt
gaaaactcggcctttgatactcagggtaccggGTCCCCGGGTTGCCTTAT
CTCTACTAATCATGCGTCAAACCAATCATTTTCTTTACCACTAAGGCACA
AATTCTCTTTCATACCCCACCCCTGCTAAATACGCCAGAATCTCCCAAAG
GAGAACGAGTCTTCTCTCAGAAATGAGTAGCAGAATTCAAAAGGATATCA
AAATAGAAACGAAGAAAAAGAGGCCCaagggcactcgatctgaaaactaG
GCTCTCTTTTTTATCCAACACATTCGTATTATTTATTCAAGTGACAAGTT
GTTGGTTGTTGGTTGCTCTTACCACCAGCTTTCAAATCACGGCTGTGTTT
AGAACCTAATGCGCTAGTATAATAAGCAGCAAATTGGAC
Run BLAST on NCBI

transcript from alignment at sc0000456:254001..254639

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023601 ID=TCONS_00023601|Name=TCONS_00023601|organism=Clytia hemisphaerica|type=transcript|length=639bp|location=Sequence derived from alignment at sc0000456:254001..254639 (Clytia hemisphaerica)
GTCCAATTTGCTGCTTATTATACTAGCGCATTAGGTTCTAAACACAGCCG
TGATTTGAAAGCTGGTGGTAAGAGCAACCAACAACCAACAACTTGTCACT
TGAATAAATAATACGAATGTGTTGGATAAAAAAGAGAGCCtagttttcag
atcgagtgcccttGGGCCTCTTTTTCTTCGTTTCTATTTTGATATCCTTT
TGAATTCTGCTACTCATTTCTGAGAGAAGACTCGTTCTCCTTTGGGAGAT
TCTGGCGTATTTAGCAGGGGTGGGGTATGAAAGAGAATTTGTGCCTTAGT
GGTAAAGAAAATGATTGGTTTGACGCATGATTAGTAGAGATAAGGCAACC
CGGGGACccggtaccctgagtatcaaaggccgagttttcaaagaaagtat
CAACCTCTTACGTGTCTagctagcagactgtatcagtatacatgtttcaa
aaaattgaaatgaaatgagtttctttcaaaataaatcttctACGTGATTC
CCAAATGttattactaaactattaattaagctaatgttacttcaatggaa
tcgaaataatagacaaatcTTTATGCAAACTTTATGTtacgattctctat
cactgactctttttaaaaattattgatgacatttttgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013267XLOC_013267Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023601-exon-sc0000456-1491911889:254001..254639TCONS_00023601-exon-sc0000456-1491911889:254001..254639Clytia hemisphaericaexon
TCONS_00023601-exon-sc0000456-1510915933:254001..254639TCONS_00023601-exon-sc0000456-1510915933:254001..254639Clytia hemisphaericaexon
TCONS_00023601-exon-sc0000456-1575043694:254001..254639TCONS_00023601-exon-sc0000456-1575043694:254001..254639Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:254001..254639 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0825064	0.24137	0.0934179	0.274185	0	0	0	0.198612	0	0.344479	0.16718	0.0549488	0	0.0569855	0.0468498	0	0	0.0634837	0	0	0	0.11673	0	0	0.26575	0	0.113133	0	0.0915756	0.186602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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