TCONS_00023662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023662
Unique NameTCONS_00023662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023662 ID=TCONS_00023662|Name=TCONS_00023662|organism=Clytia hemisphaerica|type=transcript|length=460bp
NNGCATCACCGACGATTTAACGAAAATTGAGAGAGAGCAAATCAAAGAAT
GGAAAAGAAGAGCAGACGAGATGAATAAAGCCAAGTCGAATGAAGGTTTT
AATTGGAGGGTGCGGGGAAGTCCTCGTGACAAAGTGTacctaaaaaagat
tttgtacacgatcggtttagaggccctcgtgtgcctggagtgtaattctt
ttaataaataaaaataaataaattttctttcgcgaaaaaggccaaaattc
gcaaaaatcgcgaaagtttatgctcgcgaaagtttgtacgtctaATACTT
GaccacccctgtctcatctTTCTGACATTATCTACCTGAACACCCCTGTG
AGGTGACTCTGAATAAGAtcaaattttgagattaaaaactCACTGGGGTT
GAAATTTTTACCTTCACCGGGATAGGGAGAAATATTTTCCCTGAGTTCAA
ACTATAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000457:20472..20931

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023662 ID=TCONS_00023662|Name=TCONS_00023662|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0000457:20472..20931 (Clytia hemisphaerica)
GTTTTATAGTTTGAACTCAGGGAAAATATTTCTCCCTATCCCGGTGAAGG
TAAAAATTTCAACCCCAGTGagtttttaatctcaaaatttgaTCTTATTC
AGAGTCACCTCACAGGGGTGTTCAGGTAGATAATGTCAGAAagatgagac
aggggtggtCAAGTATtagacgtacaaactttcgcgagcataaactttcg
cgatttttgcgaattttggcctttttcgcgaaagaaaatttatttatttt
tatttattaaaagaattacactccaggcacacgagggcctctaaaccgat
cgtgtacaaaatcttttttaggtACACTTTGTCACGAGGACTTCCCCGCA
CCCTCCAATTAAAACCTTCATTCGACTTGGCTTTATTCATCTCGTCTGCT
CTTCTTTTCCATTCTTTGATTTGCTCTCTCTCAATTTTCGTTAAATCGTC
GGTGATGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013287XLOC_013287Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023662-exon-sc0000457-1491911889:20472..20931TCONS_00023662-exon-sc0000457-1491911889:20472..20931Clytia hemisphaericaexon
TCONS_00023662-exon-sc0000457-1510915933:20472..20931TCONS_00023662-exon-sc0000457-1510915933:20472..20931Clytia hemisphaericaexon
TCONS_00023662-exon-sc0000457-1575043694:20472..20931TCONS_00023662-exon-sc0000457-1575043694:20472..20931Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000457supercontigsc0000457:20472..20931 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.54422	1.65401	2.40058	4.38404	1.5249	1.71885	1.27205	2.21164	1.07198	0.442608	1.71842	0.67996	0.395637	0.0976246	0	0.344528	0.106108	0.124272	0.300507	0.157229	1.36661	1.5998	0.648256	0.442019	0.455269	0.406317	1.35669	1.24105	0.62753	0.159839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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