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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023671 ID=TCONS_00023671|Name=TCONS_00023671|organism=Clytia hemisphaerica|type=transcript|length=2684bpRun BLAST on NCBI transcript from alignment at sc0000458:8106..26541+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023671 ID=TCONS_00023671|Name=TCONS_00023671|organism=Clytia hemisphaerica|type=transcript|length=18436bp|location=Sequence derived from alignment at sc0000458:8106..26541+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023671 vs. Swiss-Prot (Human)
Match: NPHP4 (Nephrocystin-4 OS=Homo sapiens GN=NPHP4 PE=1 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 6.302e-48 Identity = 113/313 (36.10%), Postives = 173/313 (55.27%), Query Frame = 1
Query: 1804 VTDAQGNAPFIINPEERITYNFSLENRDPLHTNEIVLQFLAVSR----CNN----RSVFFTFQFYRFPQTTTERLHLKKL-EGDITSDNTHPSILQRSARDGQPSDNSPPGLLIKYTVDPAYMQAGEKQTFLKYLLEQKLYIDMWDGDSMLLIGSTSTPLKYLLRQSQPAVQVSQELDVVYTEYAEDHPMLAGDINKTGL--PTGIKVALKAKLCMRMANVGYIPETNLEKMEELNKSVQTIVLQP-----TKGIMERTDRCKPSMKTSAKLMSDCDSELASVLLT-----KKQNTMMGKTNRMKKENIDKIR 2679
+ DA ++ E +T+N E D L +NE+VLQFLA SR C ++V+FTFQFYRFP TT RL L +L E S IL +RDG D PG ++Y V P +++ GE++ F +YL Q L ID+WDGDS+LLIGS + +K+LLRQ +PAVQ S EL+VV TEY +D+ +++GD+ G P G+ +K +L + +ANVG+ E + L S ++ + G + T + A+ ++D DSELA++LLT K + +++ ++ ++++R
Sbjct: 609 ILDANKQPAEAVSATEPVTFNPQKEESDCLQSNEMVLQFLAFSRVAQDCRGTSWPKTVYFTFQFYRFPPATTPRLQLVQLDEAGQPSSGALTHILVPVSRDGT-FDAGSPGFQLRYMVGPGFLKPGERRCFARYLAVQTLQIDVWDGDSLLLIGSAAVQMKHLLRQGRPAVQASHELEVVATEYEQDNMVVSGDMLGFGRVKPIGVHSVVKGRLHLTLANVGHPCEQKVRGCSTLPPSRSRVISNDGASRFSGGSLLTTGSSRRKHVVQAQKLADVDSELAAMLLTHARQGKGPQDVSRESDATRRRKLERMR 920 HSP 2 Score: 143.665 bits (361), Expect = 1.050e-34 Identity = 116/332 (34.94%), Postives = 170/332 (51.20%), Query Frame = 2
Query: 221 EFQLRVTFYDAANHYFFGSSWIGPIIKSEPISPGKHVIDFQEAIYFHTSINDVTIMLIFELVDAA---NPALETV--GWTWLRIFSYYDTLTDINETARPQERKLDFYHGSPIALLQ--IPEPLEEFQQLRKVNMCMMLYTLQIHEQMESVISFVPANVPISGDDIIPGIEENTDDDSIIDILRSPLPLRTWPCHLNKLTVTLPPSIDRFEEYLCTVLNNERLQKDELQPDGSVVKIAERKLKVGVHNGWQFVQPPHIVYL--EKDTNQTSPNKFKXXXXXXXXXXXXXXXNYGTNYVGLMLRSRLELNEMIHHPLFAIVFLLEYVVNIPVS 1189
E LRV+F+D +FFG +W +K P + I F E +YFHTS+N I+ + E+V + +L+T+ G+ LRIFS + + Q+++L YHG+P ALL + +P E+ + + + C + YTL+ H +E +P N+ +SG IPG+ + D LR P + HL+ L TL PS+++FEE L + + Q+ DG ++I ER+L+VGVHNG FVQ P +V L E D T F R S S L+LRSRL L EM+ HP FA++F LEYV + P
Sbjct: 55 ECHLRVSFFDVTYRHFFGRTW-KTTVKPTKRPPSR--IVFNEPLYFHTSLNHPHIVAVVEVVAEGKKRDGSLQTLSCGFGILRIFSNQPD----SPISASQDKRLRLYHGTPRALLHPLLQDPAEQNRHMTLIENCSLQYTLKPHPALEPAFHLLPENLLVSGLQQIPGLLPAHGESG--DALRKPRLQKPITGHLDDLFFTLYPSLEKFEEELLELHVQDHFQEGCGPLDGGALEILERRLRVGVHNGLGFVQRPQVVVLVPEMDVALTRSASFSRKVVSSSKTSSGSQ--------ALVLRSRLRLPEMVGHPAFAVIFQLEYVFSSPAG 369 The following BLAST results are available for this feature:
BLAST of TCONS_00023671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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