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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023685 ID=TCONS_00023685|Name=TCONS_00023685|organism=Clytia hemisphaerica|type=transcript|length=2357bpRun BLAST on NCBI protein sequence of TCONS_00023685-protein >TCONS_00023685-protein ID=TCONS_00023685-protein|Name=TCONS_00023685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp MEGLNNTLISEIEEILKNQDHSKKQDEDGFVMVAKEGVWPGLFGEFFMGVRun BLAST on NCBI transcript from alignment at sc0000458:160292..175761+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023685 ID=TCONS_00023685|Name=TCONS_00023685|organism=Clytia hemisphaerica|type=transcript|length=15470bp|location=Sequence derived from alignment at sc0000458:160292..175761+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000458:160292..175761+ >TCONS_00023685 ID=TCONS_00023685|Name=TCONS_00023685|organism=Clytia hemisphaerica|type=CDS|length=15093bp|location=Sequence derived from alignment at sc0000458:160292..175761+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023685 vs. Swiss-Prot (Human)
Match: K0930 (Uncharacterized protein KIAA0930 OS=Homo sapiens GN=KIAA0930 PE=1 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 2.584e-57 Identity = 104/237 (43.88%), Postives = 143/237 (60.34%), Query Frame = 3
Query: 345 WPGLFGEFFMGVSVEENENCEAQDTSDDDMLFYVQNKPHSSDNE--------------IKVYRKTSKNLPGLGDPHVNWEESVYLNLIMHGFEFTLTCAICVRLPSQDLKVLSKTVLTVHASHHMRRMDSKGESSDQSYPNIFFIIDSYDEVFESLSLQENEIVCVELTAKNKESGNESVIFLGSVKHEALVNVYDAKTSIGTKMAQKMSWMSAPNDHFEYIRMRGPHGKGYAEMRI 1013
W +F +FM E DDMLFYV+ K S +E ++VYR+ SK LPGLGDP ++WEESV LNLI+ ++ +TCA+C R D+ + K V AS MDSKGE S SYPNIFF+IDS++EVF +++ E E+VCVEL A +K + + VIF GS+++EAL VYD + S+ +MAQKMS+ + E++RM+GP GKG+AEM +
Sbjct: 32 WTWMFSTYFM----------EKWAPRQDDMLFYVRRKLAYSGSESGADGRKAAEPEVEVEVYRRDSKKLPGLGDPDIDWEESVCLNLILQKLDYMVTCAVCTRADGGDIHIHKKKSQQVFASPSKHPMDSKGEESKISYPNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSIRYEALKKVYDNRVSVAARMAQKMSFGFYKYSNMEFVRMKGPQGKGHAEMAV 258 The following BLAST results are available for this feature:
BLAST of TCONS_00023685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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