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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023689 ID=TCONS_00023689|Name=TCONS_00023689|organism=Clytia hemisphaerica|type=transcript|length=2332bp
TTTTAAGTAAAACTTTTACAAACTATAAAAATATGGTTGAAACAAAAGAA
CTGATTGCAGACCGAGATTGGTTGATCAAAGCTTGTGCTCTAATGAAGAA
ACGGTATGAAGAACAATCTAAACTTgttaaacaaaacaaacaaaatttga
tCGATAATGAAGCCATCTTTATTAACCATGTTGTGATGAAAAGACGTTTT
GTTATCAGTTACATCCAACCTTTTCATGGATGTGTAGATGAAATGGTGTT
TGAGGAGTTGTCTCCTTTCGTCAATCCTAATCAATTCAAGAATGGAGTGC
TTGTTGTCAGTAAATACCCCTCGACTTCATTGACGAATGGCAGTCATTTT
AATGGTGACGCTTTTGAAGACACACTCAAtgaaacaaatcaaaacttcCC
TACCATCAACACCATCCAGATACTGTGTGAAGCAAAAGAATTCATTAATT
GTGGAACTATTTTCTCAGCATCAGAAATATATGCTTTGGGAAAGAAAAGT
TTTCACGGAATGCTAGGCCCGTTAAAGAAATGTTTCCTCAGCCTATCAGG
ATTGGAACGGCTTTCTATCTCAGAATCTAGATACATGAGCTCGTTAATTA
CCCAAGTGACAAAATCTGCTTTTGAGGCTGTCAAAGATAAACTAACCATT
CTGTATTGCGAGCCATCAAAACCTTTGTATGTTCGAATGTTGTTATTATG
CCCTCAAACAATTGGGGAGAAGAACTCTGTTCGTATTTTGCAAATTCGTG
ATGATGACGGGAGAGCCACCAAGAAATCAAGAGCTTGTTTTGAAGAAGGG
AGCTACACTGCAAGCTACGACATATTGAAAGGCCTTGTTGTAGATAATAC
TACTGCAAATAAAGATGTCACCTCCCTTAAAGCTATATTCTGTTGGCCAA
CTTCTAAAAATCAAATGGATTCTCAGCCACCACACTCTAGTAAGTCTATC
CTACAAGTTCAAGTGGCTCTTGGTGAACAGCAGTCTCCATTAAATGATAT
TTTCTTGGAATTAACCAACCTCGATTCAATTGCAAATACGACATTGAATG
AGTTATCAAATAGCAGTGACAACTCAATGTCGTTAGAAATGACCACCATG
TACGAGAATTTATCAGTTTTCAAAGAAACTGTCTCCAGTTTTTCACTTTA
TAATGAAAACAAGGAAGAACAATCTGGTAAAGATGGAAACATTGCTGACG
AGGATGAGGATGATGACCTTGAGAAACCAATGACTCAACTCTTACGTGAA
AAACTGGTCCGTAGAGACCACGATTTCACTGACAAGCTATGGATGTTCCT
TAGGAATTCACATAATGGAGAAGAGATGAAATTTTATCTTGAAGATGTCA
TCAATGATATAGTTCATGGTTCCTTACAGCCTGCCATTAGTCCCATCAAT
TCAACTAAATTAGCCAAGCTGGTCCGCAAAATGTACACAGAGGAAAGCGA
GGAAACTAAGTATCCAATCAAGGAGAAAATTCTGGAATTTCTTTCCAATG
ATGCATCTGTAGTTAATCTTATTGTTGAGATTGGTTTCGAGAAGTTACGA
AAAGATTATTATCATTATTTCCTGACCAACGAGCTAACTATAGCATCCTC
AATGGATAAAATGCGTGGTAAGCAACAGATGGGCTTTAACAACCATGCTT
CTAGTATTGCGTTTCTATGGAAACTACATTGCTGCTTGGAGATTGTCACA
ACGCCAACCGTTTACCTAAGCCTTGATCACGATAGCCAGAGAAGTTTGTT
AAACGCCGCTTTAGACTATTATACACAACACAAAGTGCAATCGACAAGCC
CTAAATTTTGTTTGTCACTTTTACCTGTTCACGATACTTTAGCGAATGTT
TTGAATTCGTGTACGTCTCGGTTACCGGATCATTGGAAAGAGGGGATTCT
TCGTACCAACAAAGCTGGGATACAGGAATCATGTATTGTTTCACAATCGA
ACTCTAATAATAATGCTGGTGATGAGTTGACGTCAGCTTCGGTTACCTCC
ACAAGTGAAATTGATAAAGatatgaaagttggaatcgTGCTAAATGAAAG
TGTCATTGAGCTACCTCaataattttatgaatttttatcttaaaatatta
tgaaaaatattaaaaattaaagTAACGTAAATTTTCTACTATTCCGTTGA
TCTATGTTGCCCTCCAATATCTCGATATATCAATGTTACTAATATGTTTT
ACGTTTAGAAGTGTTGTTTCTTGTAATGTTTGCACCGTCAGAAATTTATT
TCCTACGCCTTGTGTGTCCAAAAAAGATGAACTGAATGTATATAAAATTA
CTCAAAGTcatcttttttaaattgatttatTG Run BLAST on NCBI protein sequence of TCONS_00023689-protein >TCONS_00023689-protein ID=TCONS_00023689-protein|Name=TCONS_00023689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=689bp
LSKTFTNYKNMVETKELIADRDWLIKACALMKKRYEEQSKLVKQNKQNLI
DNEAIFINHVVMKRRFVISYIQPFHGCVDEMVFEELSPFVNPNQFKNGVL
VVSKYPSTSLTNGSHFNGDAFEDTLNETNQNFPTINTIQILCEAKEFINC
GTIFSASEIYALGKKSFHGMLGPLKKCFLSLSGLERLSISESRYMSSLIT
QVTKSAFEAVKDKLTILYCEPSKPLYVRMLLLCPQTIGEKNSVRILQIRD
DDGRATKKSRACFEEGSYTASYDILKGLVVDNTTANKDVTSLKAIFCWPT
SKNQMDSQPPHSSKSILQVQVALGEQQSPLNDIFLELTNLDSIANTTLNE
LSNSSDNSMSLEMTTMYENLSVFKETVSSFSLYNENKEEQSGKDGNIADE
DEDDDLEKPMTQLLREKLVRRDHDFTDKLWMFLRNSHNGEEMKFYLEDVI
NDIVHGSLQPAISPINSTKLAKLVRKMYTEESEETKYPIKEKILEFLSND
ASVVNLIVEIGFEKLRKDYYHYFLTNELTIASSMDKMRGKQQMGFNNHAS
SIAFLWKLHCCLEIVTTPTVYLSLDHDSQRSLLNAALDYYTQHKVQSTSP
KFCLSLLPVHDTLANVLNSCTSRLPDHWKEGILRTNKAGIQESCIVSQSN
SNNNAGDELTSASVTSTSEIDKDMKVGIVLNESVIELPQ Run BLAST on NCBI transcript from alignment at sc0000458:200870..203654+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023689 ID=TCONS_00023689|Name=TCONS_00023689|organism=Clytia hemisphaerica|type=transcript|length=2785bp|location=Sequence derived from alignment at sc0000458:200870..203654+ (Clytia hemisphaerica)
TTTTAAGTAAAACTTTTACAAACTATAAAAATATGGTTGAAACAAAAGAA
CTGATTGCAGACCGAGATTGGTTGATCAAAGCTTGTGCTCTAATGAAGAA
ACGGTATGAAGAACAATCTAAACTTgttaaacaaaacaaacaaaatttga
tCGATAATGAAGCCATCTTTATTAACCATGTTGTGATGAAAAGACGTTTT
GTTATCAGTTACATCCAACCTTTTCATGGATGTGTAGATGAAATGGTGTT
TGAGGAGTTGTCTCCTTTCGTCAATCCTAATCAATTCAAGAATGGAGTGC
TTGTTGTCAGTAGTAAGCTTTTACATCATACTTAAATTATTTGCATTATT
TAGATTATCTAAATGCACACAGTTTTTTAAACGCCGAGAGGCTGAAATTC
AGTCCAGAGAATTGATCCCTGAAAACTGCCCCTCAAGGAAAGTTGCTATA
AATATCCTGAAAATTCTGCTTGAATCCCCTAATGATTTAATAGTAGTACA
TTGAAATATTTGTCTCTTTTTAcgattcattttattttgtttagtaCTTT
CACATTTTTCCCTCCCGGGGTCAGATCTTTGATATTTAACATAGTATAAT
TAGCATAAACTGAATCTCACTAATGAGGGCTACAGTATGCCAAAAAATCA
GAAGCAGATTTTCTTTGTTATTATAATAAAATTGGTTCAATGATATTTTT
CCTAAGATGAagcaaatgtgaaaaaaaagacttttcagTATCTTATCATC
TTGTTTATTTTATAGAATACCCCTCGACTTCATTGACGAATGGCAGTCAT
TTTAATGGTGACGCTTTTGAAGACACACTCAAtgaaacaaatcaaaactt
cCCTACCATCAACACCATCCAGATACTGTGTGAAGCAAAAGAATTCATTA
ATTGTGGAACTATTTTCTCAGCATCAGAAATATATGCTTTGGGAAAGAAA
AGTTTTCACGGAATGCTAGGCCCGTTAAAGAAATGTTTCCTCAGCCTATC
AGGATTGGAACGGCTTTCTATCTCAGAATCTAGATACATGAGCTCGTTAA
TTACCCAAGTGACAAAATCTGCTTTTGAGGCTGTCAAAGATAAACTAACC
ATTCTGTATTGCGAGCCATCAAAACCTTTGTATGTTCGAATGTTGTTATT
ATGCCCTCAAACAATTGGGGAGAAGAACTCTGTTCGTATTTTGCAAATTC
GTGATGATGACGGGAGAGCCACCAAGAAATCAAGAGCTTGTTTTGAAGAA
GGGAGCTACACTGCAAGCTACGACATATTGAAAGGCCTTGTTGTAGATAA
TACTACTGCAAATAAAGATGTCACCTCCCTTAAAGCTATATTCTGTTGGC
CAACTTCTAAAAATCAAATGGATTCTCAGCCACCACACTCTAGTAAGTCT
ATCCTACAAGTTCAAGTGGCTCTTGGTGAACAGCAGTCTCCATTAAATGA
TATTTTCTTGGAATTAACCAACCTCGATTCAATTGCAAATACGACATTGA
ATGAGTTATCAAATAGCAGTGACAACTCAATGTCGTTAGAAATGACCACC
ATGTACGAGAATTTATCAGTTTTCAAAGAAACTGTCTCCAGTTTTTCACT
TTATAATGAAAACAAGGAAGAACAATCTGGTAAAGATGGAAACATTGCTG
ACGAGGATGAGGATGATGACCTTGAGAAACCAATGACTCAACTCTTACGT
GAAAAACTGGTCCGTAGAGACCACGATTTCACTGACAAGCTATGGATGTT
CCTTAGGAATTCACATAATGGAGAAGAGATGAAATTTTATCTTGAAGATG
TCATCAATGATATAGTTCATGGTTCCTTACAGCCTGCCATTAGTCCCATC
AATTCAACTAAATTAGCCAAGCTGGTCCGCAAAATGTACACAGAGGAAAG
CGAGGAAACTAAGTATCCAATCAAGGAGAAAATTCTGGAATTTCTTTCCA
ATGATGCATCTGTAGTTAATCTTATTGTTGAGATTGGTTTCGAGAAGTTA
CGAAAAGATTATTATCATTATTTCCTGACCAACGAGCTAACTATAGCATC
CTCAATGGATAAAATGCGTGGTAAGCAACAGATGGGCTTTAACAACCATG
CTTCTAGTATTGCGTTTCTATGGAAACTACATTGCTGCTTGGAGATTGTC
ACAACGCCAACCGTTTACCTAAGCCTTGATCACGATAGCCAGAGAAGTTT
GTTAAACGCCGCTTTAGACTATTATACACAACACAAAGTGCAATCGACAA
GCCCTAAATTTTGTTTGTCACTTTTACCTGTTCACGATACTTTAGCGAAT
GTTTTGAATTCGTGTACGTCTCGGTTACCGGATCATTGGAAAGAGGGGAT
TCTTCGTACCAACAAAGCTGGGATACAGGAATCATGTATTGTTTCACAAT
CGAACTCTAATAATAATGCTGGTGATGAGTTGACGTCAGCTTCGGTTACC
TCCACAAGTGAAATTGATAAAGatatgaaagttggaatcgTGCTAAATGA
AAGTGTCATTGAGCTACCTCaataattttatgaatttttatcttaaaata
ttatgaaaaatattaaaaattaaagTAACGTAAATTTTCTACTATTCCGT
TGATCTATGTTGCCCTCCAATATCTCGATATATCAATGTTACTAATATGT
TTTACGTTTAGAAGTGTTGTTTCTTGTAATGTTTGCACCGTCAGAAATTT
ATTTCCTACGCCTTGTGTGTCCAAAAAAGATGAACTGAATGTATATAAAA
TTACTCAAAGTcatcttttttaaattgatttatTG Coding sequence (CDS) from alignment at sc0000458:200870..203654+ >TCONS_00023689 ID=TCONS_00023689|Name=TCONS_00023689|organism=Clytia hemisphaerica|type=CDS|length=4140bp|location=Sequence derived from alignment at sc0000458:200870..203654+ (Clytia hemisphaerica)
TTAAGTAAAACTTTTACAAACTATAAAAATATGGTTGAAACAAAAGAACT
GATTGCAGACCGAGATTGGTTGATCAAAGCTTGTGCTCTAATGAAGAAAC
GGTATGAAGAACAATCTAAACTTgttaaacaaaacaaacaaaatttgatC
GATAATGAAGCCATCTTTATTAACCATGTTGTGATGAAAAGACGTTTTGT
TATCAGTTACATCCAACCTTTTCATGGATGTGTAGATGAAATGGTGTTTG
AGGAGTTGTCTCCTTTCGTCAATCCTAATCAATTCAAGAATGGAGTGCTT
GTTGTCAGTAAATACCCCTCGACTTCATTGACGAATGGCAGTCATTTTAA
TGGTGACGCTTTTGAAGACACACTCAAtgaaacaaatcaaaacttcCCTA
CCATCAACACCATCCAGATACTGTGTGAAGCAAAAGAATTCATTAATTGT
GGAACTATTTTCTCAGCATCAGAAATATATGCTTTGGGAAAGAAAAGTTT
TCACGGAATGCTAGGCCCGTTAAAGAAATGTTTCCTCAGCCTATCAGGAT
TGGAACGGCTTTCTATCTCAGAATCTAGATACATGAGCTCGTTAATTACC
CAAGTGACAAAATCTGCTTTTGAGGCTGTCAAAGATAAACTAACCATTCT
GTATTGCGAGCCATCAAAACCTTTGTATGTTCGAATGTTGTTATTATGCC
CTCAAACAATTGGGGAGAAGAACTCTGTTCGTATTTTGCAAATTCGTGAT
GATGACGGGAGAGCCACCAAGAAATCAAGAGCTTGTTTTGAAGAAGGGAG
CTACACTGCAAGCTACGACATATTGAAAGGCCTTGTTGTAGATAATACTA
CTGCAAATAAAGATGTCACCTCCCTTAAAGCTATATTCTGTTGGCCAACT
TCTAAAAATCAAATGGATTCTCAGCCACCACACTCTAGTAAGTCTATCCT
ACAAGTTCAAGTGGCTCTTGGTGAACAGCAGTCTCCATTAAATGATATTT
TCTTGGAATTAACCAACCTCGATTCAATTGCAAATACGACATTGAATGAG
TTATCAAATAGCAGTGACAACTCAATGTCGTTAGAAATGACCACCATGTA
CGAGAATTTATCAGTTTTCAAAGAAACTGTCTCCAGTTTTTCACTTTATA
ATGAAAACAAGGAAGAACAATCTGGTAAAGATGGAAACATTGCTGACGAG
GATGAGGATGATGACCTTGAGAAACCAATGACTCAACTCTTACGTGAAAA
ACTGGTCCGTAGAGACCACGATTTCACTGACAAGCTATGGATGTTCCTTA
GGAATTCACATAATGGAGAAGAGATGAAATTTTATCTTGAAGATGTCATC
AATGATATAGTTCATGGTTCCTTACAGCCTGCCATTAGTCCCATCAATTC
AACTAAATTAGCCAAGCTGGTCCGCAAAATGTACACAGAGGAAAGCGAGG
AAACTAAGTATCCAATCAAGGAGAAAATTCTGGAATTTCTTTCCAATGAT
GCATCTGTAGTTAATCTTATTGTTGAGATTGGTTTCGAGAAGTTACGAAA
AGATTATTATCATTATTTCCTGACCAACGAGCTAACTATAGCATCCTCAA
TGGATAAAATGCGTGGTAAGCAACAGATGGGCTTTAACAACCATGCTTCT
AGTATTGCGTTTCTATGGAAACTACATTGCTGCTTGGAGATTGTCACAAC
GCCAACCGTTTACCTAAGCCTTGATCACGATAGCCAGAGAAGTTTGTTAA
ACGCCGCTTTAGACTATTATACACAACACAAAGTGCAATCGACAAGCCCT
AAATTTTGTTTGTCACTTTTACCTGTTCACGATACTTTAGCGAATGTTTT
GAATTCGTGTACGTCTCGGTTACCGGATCATTGGAAAGAGGGGATTCTTC
GTACCAACAAAGCTGGGATACAGGAATCATGTATTGTTTCACAATCGAAC
TCTAATAATAATGCTGGTGATGAGTTGACGTCAGCTTCGGTTACCTCCAC
AAGTGAAATTGATAAAGatatgaaagttggaatcgTGCTAAATGAAAGTG
TCATTGAGCTACCTCaataaTTAAGTAAAACTTTTACAAACTATAAAAAT
ATGGTTGAAACAAAAGAACTGATTGCAGACCGAGATTGGTTGATCAAAGC
TTGTGCTCTAATGAAGAAACGGTATGAAGAACAATCTAAACTTgttaaac
aaaacaaacaaaatttgatCGATAATGAAGCCATCTTTATTAACCATGTT
GTGATGAAAAGACGTTTTGTTATCAGTTACATCCAACCTTTTCATGGATG
TGTAGATGAAATGGTGTTTGAGGAGTTGTCTCCTTTCGTCAATCCTAATC
AATTCAAGAATGGAGTGCTTGTTGTCAGTAAATACCCCTCGACTTCATTG
ACGAATGGCAGTCATTTTAATGGTGACGCTTTTGAAGACACACTCAAtga
aacaaatcaaaacttcCCTACCATCAACACCATCCAGATACTGTGTGAAG
CAAAAGAATTCATTAATTGTGGAACTATTTTCTCAGCATCAGAAATATAT
GCTTTGGGAAAGAAAAGTTTTCACGGAATGCTAGGCCCGTTAAAGAAATG
TTTCCTCAGCCTATCAGGATTGGAACGGCTTTCTATCTCAGAATCTAGAT
ACATGAGCTCGTTAATTACCCAAGTGACAAAATCTGCTTTTGAGGCTGTC
AAAGATAAACTAACCATTCTGTATTGCGAGCCATCAAAACCTTTGTATGT
TCGAATGTTGTTATTATGCCCTCAAACAATTGGGGAGAAGAACTCTGTTC
GTATTTTGCAAATTCGTGATGATGACGGGAGAGCCACCAAGAAATCAAGA
GCTTGTTTTGAAGAAGGGAGCTACACTGCAAGCTACGACATATTGAAAGG
CCTTGTTGTAGATAATACTACTGCAAATAAAGATGTCACCTCCCTTAAAG
CTATATTCTGTTGGCCAACTTCTAAAAATCAAATGGATTCTCAGCCACCA
CACTCTAGTAAGTCTATCCTACAAGTTCAAGTGGCTCTTGGTGAACAGCA
GTCTCCATTAAATGATATTTTCTTGGAATTAACCAACCTCGATTCAATTG
CAAATACGACATTGAATGAGTTATCAAATAGCAGTGACAACTCAATGTCG
TTAGAAATGACCACCATGTACGAGAATTTATCAGTTTTCAAAGAAACTGT
CTCCAGTTTTTCACTTTATAATGAAAACAAGGAAGAACAATCTGGTAAAG
ATGGAAACATTGCTGACGAGGATGAGGATGATGACCTTGAGAAACCAATG
ACTCAACTCTTACGTGAAAAACTGGTCCGTAGAGACCACGATTTCACTGA
CAAGCTATGGATGTTCCTTAGGAATTCACATAATGGAGAAGAGATGAAAT
TTTATCTTGAAGATGTCATCAATGATATAGTTCATGGTTCCTTACAGCCT
GCCATTAGTCCCATCAATTCAACTAAATTAGCCAAGCTGGTCCGCAAAAT
GTACACAGAGGAAAGCGAGGAAACTAAGTATCCAATCAAGGAGAAAATTC
TGGAATTTCTTTCCAATGATGCATCTGTAGTTAATCTTATTGTTGAGATT
GGTTTCGAGAAGTTACGAAAAGATTATTATCATTATTTCCTGACCAACGA
GCTAACTATAGCATCCTCAATGGATAAAATGCGTGGTAAGCAACAGATGG
GCTTTAACAACCATGCTTCTAGTATTGCGTTTCTATGGAAACTACATTGC
TGCTTGGAGATTGTCACAACGCCAACCGTTTACCTAAGCCTTGATCACGA
TAGCCAGAGAAGTTTGTTAAACGCCGCTTTAGACTATTATACACAACACA
AAGTGCAATCGACAAGCCCTAAATTTTGTTTGTCACTTTTACCTGTTCAC
GATACTTTAGCGAATGTTTTGAATTCGTGTACGTCTCGGTTACCGGATCA
TTGGAAAGAGGGGATTCTTCGTACCAACAAAGCTGGGATACAGGAATCAT
GTATTGTTTCACAATCGAACTCTAATAATAATGCTGGTGATGAGTTGACG
TCAGCTTCGGTTACCTCCACAAGTGAAATTGATAAAGatatgaaagttgg
aatcgTGCTAAATGAAAGTGTCATTGAGCTACCTCaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023689-exon-sc0000458-1491911889:200870..201181 | TCONS_00023689-exon-sc0000458-1491911889:200870..201181 | Clytia hemisphaerica | exon |
| TCONS_00023689-exon-sc0000458-1510915933:200870..201181 | TCONS_00023689-exon-sc0000458-1510915933:200870..201181 | Clytia hemisphaerica | exon |
| TCONS_00023689-exon-sc0000458-1575043694:200870..201181 | TCONS_00023689-exon-sc0000458-1575043694:200870..201181 | Clytia hemisphaerica | exon |
| TCONS_00023689-exon-sc0000458-1491911889:201635..203654 | TCONS_00023689-exon-sc0000458-1491911889:201635..203654 | Clytia hemisphaerica | exon |
| TCONS_00023689-exon-sc0000458-1510915933:201635..203654 | TCONS_00023689-exon-sc0000458-1510915933:201635..203654 | Clytia hemisphaerica | exon |
| TCONS_00023689-exon-sc0000458-1575043694:201635..203654 | TCONS_00023689-exon-sc0000458-1575043694:201635..203654 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000458 | supercontig | sc0000458:200870..203654 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018630 | Zwilch |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:1990423 | RZZ complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007093 | mitotic cell cycle checkpoint |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007093 |
mitotic cell cycle checkpoint |
| cellular_component |
GO:1990423 |
RZZ complex |
Blast
The following BLAST results are available for this feature:
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