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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023706 ID=TCONS_00023706|Name=TCONS_00023706|organism=Clytia hemisphaerica|type=transcript|length=1586bp
ATGTCAATTACTTCAACAGAGCTTATCTTATCACCACTTCTTTTTGCAAG
CAAGAAGCCAATTAAAAAACTTGATGTATTTCAAAATACTAGGAGAAATA
GCAATTCGAATAATTTTTAAATGATGAAAAACCtaacattattttctttc
ttttttagaatctaaAAAAACACTAACTACAGATAAAATGAATGTTTTGA
TAACAAGGGTGTACCAGGTAAAATCAGTGCAGGTTAACGTAAACATATTG
TATTTTGTTTGAATCATAGATACAGACACTGTTAATGATGCCTATTGCCT
CAGTTTTGTCACACTTGAGTGTTTTAAGATATATATTTTCCACGTGCCTT
TTCATTGTCTGAATCAACTTGTAAGATATATCTTCCAAGCCTTTTACATT
ATCTTATCATATTCTTGTCCAAGCTGCTATCTGATTTGATTTTAGTATGA
TAACAATATAATAGACTGAAATAATAAGGTTCATACgtcttttgtttatt
taaaaatcagtgAAGGAGGTACTACAGCAACAAGGGAAGTACTTGATACT
TAGTTATACGTGCACAAAAAGTTGTCAATCAATTGTTGAACttgtttatt
ttcctttttttagtaTTCATACGTTTTTGGGACAAAGATAACTTTGGAAT
CTGCATGATCTACAACATATGTGCTCTCGCCATCAAGGTACACTCTGTGT
GGTGAGTGTAGgtttctttctttcattttcctcatACAAGACACGTTGGT
TTTCTTGTTACCCTCATAGCTGTTTGTGGAGTAGGATCGTTCTCGACCAC
AGTAGCTCTCCTTCAAATGCATTGCCTTCCGTTGCAATACATCTAACTTT
TCTCGTAAACGTTGCTCCAGCTCTTCTGTTGATAGACCTTCGTATGTTGA
GGCATACTTTGCACTTGGTGTCAGAGATGGGCTTGAGTATCGGTGTTTAG
ACATACTTCTTTCAAGCTCTTCCTCTGTTTTTTTCATACATCGATTACGA
CGATATTCCAAAGCTTTCTCGAAATCTTCTAAAtacttttgtttacattt
ttcaaacttttcttgatCAGCGCTCTCGTCGGATTTCTCTCTCCAACTCG
ACCGTTTAGAATCTTTAGttgtttttctgcttttttgtGAAGAAGTACTT
TCCTTGTAGCTTGAACGGTTGTGTTTTTCGTACCGATCGTAATGCCCTGT
CTCTACAAGTTGGCAGGCATCGTAACGCAGATCTTTAAAATCACAGGTCA
AGTCATATAATTTCCATGCAATATCTTTTAATTCGAGATTGATTCGATCG
TATTCTCGTTTTTTATCGATTCGTCCCCGGTAATCATCTTCGAAATACGA
ATCCATTTTTCATGAAGATAAAATTGTTTGACCAGGAAGatgatttttag
ttttttaattcTTCCCGAgtgaaaattttcatgaaaatcaaaatatgagA
TTTCTCAAgtcaaattgaaaatgtttgtaGCGTCCATTCAAAACATGTCA
CAAACTCTCCCCGACGAagtaaaaaaaatcctaaattttgcaatgatatt
ttaaaaatttaaattcttgcaatgattcaatctgtc Run BLAST on NCBI protein sequence of TCONS_00023706-protein >TCONS_00023706-protein ID=TCONS_00023706-protein|Name=TCONS_00023706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MDSYFEDDYRGRIDKKREYDRINLELKDIAWKLYDLTCDFKDLRYDACQL
VETGHYDRYEKHNRSSYKESTSSQKSRKTTKDSKRSSWREKSDESADQEK
FEKCKQKYLEDFEKALEYRRNRCMKKTEEELERSMSKHRYSSPSLTPSAK
YASTYEGLSTEELEQRLREKLDVLQRKAMHLKESYCGRERSYSTNSYEGN
KKTNVSCMRKMKERNLHSPHRVYLDGESTYVVDHADSKVIFVPKTYEY Run BLAST on NCBI transcript from alignment at sc0000458:252125..253710 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023706 ID=TCONS_00023706|Name=TCONS_00023706|organism=Clytia hemisphaerica|type=transcript|length=1586bp|location=Sequence derived from alignment at sc0000458:252125..253710 (Clytia hemisphaerica)
gacagattgaatcattgcaagaatttaaatttttaaaatatcattgcaaa
atttaggattttttttactTCGTCGGGGAGAGTTTGTGACATGTTTTGAA
TGGACGCtacaaacattttcaatttgacTTGAGAAATctcatattttgat
tttcatgaaaattttcacTCGGGAAgaattaaaaaactaaaaatcatCTT
CCTGGTCAAACAATTTTATCTTCATGAAAAATGGATTCGTATTTCGAAGA
TGATTACCGGGGACGAATCGATAAAAAACGAGAATACGATCGAATCAATC
TCGAATTAAAAGATATTGCATGGAAATTATATGACTTGACCTGTGATTTT
AAAGATCTGCGTTACGATGCCTGCCAACTTGTAGAGACAGGGCATTACGA
TCGGTACGAAAAACACAACCGTTCAAGCTACAAGGAAAGTACTTCTTCac
aaaaaagcagaaaaacaaCTAAAGATTCTAAACGGTCGAGTTGGAGAGAG
AAATCCGACGAGAGCGCTGatcaagaaaagtttgaaaaatgtaaacaaaa
gtaTTTAGAAGATTTCGAGAAAGCTTTGGAATATCGTCGTAATCGATGTA
TGAAAAAAACAGAGGAAGAGCTTGAAAGAAGTATGTCTAAACACCGATAC
TCAAGCCCATCTCTGACACCAAGTGCAAAGTATGCCTCAACATACGAAGG
TCTATCAACAGAAGAGCTGGAGCAACGTTTACGAGAAAAGTTAGATGTAT
TGCAACGGAAGGCAATGCATTTGAAGGAGAGCTACTGTGGTCGAGAACGA
TCCTACTCCACAAACAGCTATGAGGGTAACAAGAAAACCAACGTGTCTTG
TatgaggaaaatgaaagaaagaaacCTACACTCACCACACAGAGTGTACC
TTGATGGCGAGAGCACATATGTTGTAGATCATGCAGATTCCAAAGTTATC
TTTGTCCCAAAAACGTATGAAtactaaaaaaaggaaaataaacaaGTTCA
ACAATTGATTGACAACTTTTTGTGCACGTATAACTAAGTATCAAGTACTT
CCCTTGTTGCTGTAGTACCTCCTTcactgatttttaaataaacaaaagac
GTATGAACCTTATTATTTCAGTCTATTATATTGTTATCATACTAAAATCA
AATCAGATAGCAGCTTGGACAAGAATATGATAAGATAATGTAAAAGGCTT
GGAAGATATATCTTACAAGTTGATTCAGACAATGAAAAGGCACGTGGAAA
ATATATATCTTAAAACACTCAAGTGTGACAAAACTGAGGCAATAGGCATC
ATTAACAGTGTCTGTATCTATGATTCAAACAAAATACAATATGTTTACGT
TAACCTGCACTGATTTTACCTGGTACACCCTTGTTATCAAAACATTCATT
TTATCTGTAGTTAGTGTTTTTttagattctaaaaaagaaagaaaataatg
ttaGGTTTTTCATCATTTAAAAATTATTCGAATTGCTATTTCTCCTAGTA
TTTTGAAATACATCAAGTTTTTTAATTGGCTTCTTGCTTGCAAAAAGAAG
TGGTGATAAGATAAGCTCTGTTGAAGTAATTGACAT Coding sequence (CDS) from alignment at sc0000458:252125..253710 >TCONS_00023706 ID=TCONS_00023706|Name=TCONS_00023706|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0000458:252125..253710 (Clytia hemisphaerica)
ATGGATTCGTATTTCGAAGATGATTACCGGGGACGAATCGATAAAAAACG
AGAATACGATCGAATCAATCTCGAATTAAAAGATATTGCATGGAAATTAT
ATGACTTGACCTGTGATTTTAAAGATCTGCGTTACGATGCCTGCCAACTT
GTAGAGACAGGGCATTACGATCGGTACGAAAAACACAACCGTTCAAGCTA
CAAGGAAAGTACTTCTTCacaaaaaagcagaaaaacaaCTAAAGATTCTA
AACGGTCGAGTTGGAGAGAGAAATCCGACGAGAGCGCTGatcaagaaaag
tttgaaaaatgtaaacaaaagtaTTTAGAAGATTTCGAGAAAGCTTTGGA
ATATCGTCGTAATCGATGTATGAAAAAAACAGAGGAAGAGCTTGAAAGAA
GTATGTCTAAACACCGATACTCAAGCCCATCTCTGACACCAAGTGCAAAG
TATGCCTCAACATACGAAGGTCTATCAACAGAAGAGCTGGAGCAACGTTT
ACGAGAAAAGTTAGATGTATTGCAACGGAAGGCAATGCATTTGAAGGAGA
GCTACTGTGGTCGAGAACGATCCTACTCCACAAACAGCTATGAGGGTAAC
AAGAAAACCAACGTGTCTTGTatgaggaaaatgaaagaaagaaacCTACA
CTCACCACACAGAGTGTACCTTGATGGCGAGAGCACATATGTTGTAGATC
ATGCAGATTCCAAAGTTATCTTTGTCCCAAAAACGTATGAAtactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023706-exon-sc0000458-1491911889:252125..253710 | TCONS_00023706-exon-sc0000458-1491911889:252125..253710 | Clytia hemisphaerica | exon |
| TCONS_00023706-exon-sc0000458-1510915933:252125..253710 | TCONS_00023706-exon-sc0000458-1510915933:252125..253710 | Clytia hemisphaerica | exon |
| TCONS_00023706-exon-sc0000458-1575043694:252125..253710 | TCONS_00023706-exon-sc0000458-1575043694:252125..253710 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000458 | supercontig | sc0000458:252125..253710 . |
Blast
The following BLAST results are available for this feature:
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