TCONS_00023710 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023710
Unique Name	TCONS_00023710
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1421

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000460:48711..55582+

transcript sequence

>TCONS_00023710 ID=TCONS_00023710|Name=TCONS_00023710|organism=Clytia hemisphaerica|type=transcript|length=1421bp
TTCCGTGCTAAAAATCATTGAACAATAACAATCCCGCGTTTTGTGACTGT
GGTCACGCGGGTCGAAGGAAATTTCTTTCccacatttttaattttcactt
cAAGCACGTGGAACGCGAATGGCTGACAGTCCTCAAGCAAAGTcaagaaa
acttgaaaatcaAGACCAAATGAAAGTCGAAATGGCAGCAGCAgtctcaa
caacaacaacaaacggCCATATTAATGGTGATGTCCTCAAAAAGAAATGC
CCTCCCTCTGATGAGAAACCTGCAGTCAATGACATGACAAGCAAGGATTA
TTATTTCGACTCATATGCTCACTTTGGTATCCATGAAGAAATGTTGAAAG
ATGAAGTACGCACACTCACTTATCGAAATTCTATGTACAATAACAGACAT
CTCTTCAAGGGAAAGGTTGTTCTTGATGTTGGTTGTGGGACTGGCATTTT
GAGTATGTTTGCAAAAAAAGCAGGCGCAAAACATGTGTATGGTATTGATA
TGTCCTCCATCATTGATCACGCTAAAGAAATTGTTAAACAAAATGGATTT
GAAAAAGATATCACACTTATCAAAGGAAAGGTTGAAGAGGTAACGTTACC
AGTAGAAAAAGTTGATATCATCATCAGTGAATGGATGGGATATTGTTTGT
TATATGAATCCATGTTGGACACTGTCATCTACGCTCGTGATAAATGGCTC
AAACCTGATGGTCTCATGTTTCCAGACAAAGCATCGATGTGGATAACAGC
TATTGAAGACCGTGATTATAAAGAAGAAAAGATCAACTGGTGGGATAATG
TTTATGGATTCGACATGAGCCATATTCGTAACGTAGCGTTAAACGAACCC
ATCGTTGATGTTGTTGAACATAGACAAATAGCAACTGATGCCTGTCGCTT
CAAGGACCTCGACCTTTTAACATGCAAAGTTGAAGATTTAGCGTTCACAG
CTCCCTTCAAGATAGCAGCACGTCGGGATGACTACCTTCACGCTTTTGTT
GTCTACTTCAATGTCGAATTTGCTCCTTGTCATAAATTCACTGGATTCTC
AACAGGTCCCGAAGCAAGATACACTCATTGGAAGCAGACGGTGTTTTACA
TCAACGAACCGATTACAGCAAAACGTGGTGAAGTTGTGACCGGTGAATTT
ATTATAAAACCTAACGATCGAAACAATCGCGACTTGGATCTTGAGATCAC
CCATGAATTCACAGGAGAGTTAATGACGACCAAAGATCATCACACGTACA
AAATGAGATAAGGAGCGAACCAGAAGAGAGTTGTAGAGTAAAACTGGCTT
CCATTTTAGCCCTTACATACCGACACGTGAAAACCGACACCTTGTTCATC
AAGCCCTTCTCTGGTATCAATTCTGATCAGAAGACTTGGTAGTGTCATTT
TCTATAGCAACTAGACTGNCT

Run BLAST on NCBI

transcript from alignment at sc0000460:48711..55582+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023710 ID=TCONS_00023710|Name=TCONS_00023710|organism=Clytia hemisphaerica|type=transcript|length=6872bp|location=Sequence derived from alignment at sc0000460:48711..55582+ (Clytia hemisphaerica)
TTCCGTGCTAAAAATCATTGAACAATAACAATCCCGCGTTTTGTGACTGT
GGTCACGCGGGTCGAAGGAAATTTCTTTCccacatttttaattttcactt
cAAGCACGTGGAACGCGAATGGCTGACAGTCCTCAAGCAAAGTcaagaaa
acttgaaaatcaAGACCAAATGGTAATATCTTACTCTAATTTTTATATTG
TGTATAACTAATATGAGGCAAGGTGGTTGGTgtcttgaaaatttataata
gaATCCCTAAAAATAGCATAAATTATGCTTTCATTCTGTCTTTTTTAACC
ATGGCAACTTTTCTGATAGTTTCTGGCAAGAGGTGCCAACCAACCTACAA
TGTGTAATCAAACAGCTTTGAGGAAGTCTTATCTATCCTAGTACAATATT
AGTGATTGGTACATTTTGAAACAAACAGTTTTGGCAGATTTTTGAAAGGC
CATTTAAGGTTTATAAAAGAGGCTTGGTTGTTGACCCAAAAATTGGGTTG
GTTGATCAGTTCACAGTTTGGGTAAGAAAAAGGTCCTGTATGTTTATTTG
GGCTTTTCAAACTGTTTAATACTAAAAActgtgaaattaaattcccgcaa
aacTTCCGAATTCAGTTCGGGAAATTGcatatccagacgatctcaatcga
atggaatcgacgatcaaaccagtcgaacacaatcaaatctcaatcgaata
ttaccgcaattttctgatattcgattgatattcgattgatgttccattga
tgttcgattgcattcgattgcgttcgatcgtcgattcattgacccccgga
ttgttcatcgcacaATTTCtatgggaaatcgaaagtaattgcattcggct
tgtgatgtttgagagcttggatgttgggaagctgcaagaataaagccaga
caatctcaatggAACAGattcgacgatcgaaccagtcgaacaacaatcga
atattacccagaattgacgttcgattgagattcaattgcgtttgacaatc
gaatttcaatcggtcgattgcgttcgatttggttccactggttcgatcgt
cgattctgttcgattgagatcgtctggcatATAGATCCGCAACGTTGCAA
AATTCCGCAATGTTGCATTTTTTGCAACACTTCCCTTAGCGTGCGCTGCA
ATTTTTCGCAACGTTCCCAATGGAAGTGTGCGATTATGAACACCAACTAT
GACGACCAATTTTACCAATTCAAATAGAAGCAAAATCTGGCATATTTGAA
CAAAGTATATAGCATTTCTTCTAAGAATGATTGTGAATAATCGCtaggta
ggaaattaaaatgctagggtgaaaagtttccttttgggCCAGTGTGAAAA
CGATGCAAAGTCCACGCCGAATTGTTATTTCATTAAACTGAGGTGCGCGC
CAAAAGACGTTCTGCTTGCGAGCCCTGACATATTTGATCTTCTCATGCct
aaaagttgctcaaaatttgtataaaaagagccaaagttgctcaaaatttg
tataaaaagaGCTGGAATTGCTGGTACTTCTAAGAAAGAAATGTATAGTT
AAATATGAAAGTTAAATGAATCATGACCATGAGCCATATTTTAGGAATCC
AAAGTGAGTTGCTTTATCAATTCAAATAATTTGTACACCTATTTCTTAAG
TATCTTTAtcaataattgttttgtttcattAAATACGAAATGAAAACAGA
TAAAGAAAAAGGTGGATGCGTTTGAACCTGGCGTAATGAAATCAGGCGTT
AGAATGGCGGTGCTCATCTCgtcttgaaaagctttgacttTTACTGCCTC
ACTCCAAATATATTTGGCGCAATGTACACTAATTCCAGGCTGGCTTTTGA
GTTGTTTTACAAAATGCACATTATTTTGGGACCCTGGTCCAGGGACCCTG
GTCCAGATCCTGCGACCCCGAATCAGTAAAGCTGCAGAATATGACAatgc
aaaaaatgcaaaatttcgtaACTTTGCAGATCTATGCAATTTCCCGAACT
GAATTTTGATAGGTgaaccacgaaattaaattctgcggaAATTtgttctg
tgaaaatttcttcctataAGGTCAAGTCTGTGTCAATTTTTACCATAACT
TTACAAGCATTTGTCCTGATTTGTCGTACAATAATGTTTGGTATTGTGCA
GTCATGGAAATCCTCTTAATTGCGCGCTTAACTTCCGGGACTTAAACGTG
CAATTACACTGCTATCAAAATTGTAGAATTTTTAAGGGTGCAATTACATG
CTTATCACTATTTGAATGGGTGCTAAGCATGTAATTGTACATAGGGTCAG
CCCAGGTCTAGGTCCCAGGCATAAaaataggtccccccaaatattaaaag
ttttttaagcagCCCCCAGTCTTagtataaaatatttgttgatttcttaa
tattatttttaggaaaatcacaTCTATTCTTTTTCCATTCTTGAAATCTT
AATGGTTTTTAAGATGTAAAAAGGCCTTTATTTCGTGGGTGAAAATGCCT
ATAATGTGCAGTAGCATGGTgcgaagattttgattttgacgcccactatg
aaaagtaaaaatctcTTTAAAAATAACGCAGGCAGACGCAGGCGaggaaa
acacaaaatttttgggtgttttgtctcttttttggccaaaaactgCCATA
TCAAGTAATCAGTGGCATCTTTTTGCGATCAgggcccccctgccaccacg
ctattGTCATTATACATATTAATTTAGAACCCTAGAAGATAttgtgcttt
tgctgaaaagtgtgccgatgttaggtaggaaatccttcctaAGTCACATG
ACACACAATAAAATTTcagtgcttgaccaatcagaagcattgtgggtttt
cgaaaacaatagcagcgatattcacttttttgcttggaagaggtTAAAGC
ATGCCATCTAGCTCTTctggctttataaatctatgggtgTAACCCCCCAA
AAAAGTCAGGGGGTTGGCGCTGTGTTGCTTCCTTAACTAGTTTAtcattt
aaaaaactttatttgctTCCGATCGCTTTGTTGAAATCGGAAAGCCTTGG
ATtattactcaaaatttatcctAGAAAGCCATTGTGTTCAACTTTTGCCT
GTTTGATCATGTATCATGAACCCTCTAATCTGCTCAAGCAATCTCAACCG
GGGCGGGatcataagcgtgcaattgcacacAGGCGTAAATTTAACTGTGT
AATTGCAGGCTTACAGCCTTGGGAGTCAAACGTGCAAAAGAGGATTCTTC
AGACTGTTGGGCTATCCCATTTTGAAatcatacaggggtattgactaact
tttccagggggtttgaaccttcattttccaaggttgttcatttttcagat
tttcaaaggGGGCtattaaaggtttccagggggttctctcCTCCTAAACT
GACATCAATAGTCATTTTCCaagccctttttcacaaaatttcactttcca
ggggtgtcaacccctaatttccagggatagtttgttatccaaaattttta
aaggcaaaaaaagttatcaatacccctgtacaatttttttttggaatagc
ccataGTTGGACATTTATATTTTTTCCactaattttagcaaaaattaaat
tttgcagtTGTGAAGTTATAAGATTTCACGAGACTTAATTTCGTGGATGG
CATTATACagagacaatattttcatgatTCTGATGCAATCTGAAATGGGG
AAATCTGCAAATTTTAATCcctgcgaaaatttatcccattaaagtaattt
gtttttcaaaattcactcTGATTCACTctagaaagtgaagaaaaagatgg
aacttcttgtagaataacCCTATAACTACCATTTTCTCAACAATGAAACT
TCAATCTTATGTCAGaaatactgaaaaaaaattcaaaaataataattctG
TCTAAAGATGTTGAACAAAGTGTTCAACTGGTTGACCCCTAAAATGCATG
tgtttttttattgcttttgaTTGCCCAAACCATTTTactgataaattttt
tttaaaaaacttaagGAACTTAAGGATTTGCACTGCAAAAATTAAGTTGA
TTTAAAATTTGTAGCACAACCAGTAATCGTTACTATTTTCACAGAAAGTC
GAAATGGCAGCAGCAgtctcaacaacaacaacaaacggCCATATTAATGG
TGATGTCCTCAAAAAGAAATGCCCTCCCTCTGATGAGAAACCTGCAGTCA
ATGACATGACAAGCAAGGATTATTATTTCGACTCATATGCTCACTTTGGT
ATCCATGAAGAAATGTTGAAAGATGAAGTACGCACACTCACTTATCGAAA
TTCTATGTACAATAACAGACATCTCTTCAAGGGAAAGGTTGTTCTTGATG
TTGGTTGTGGGACTGGCATTTTGAGTATGTTTGCAAAAAAAGCAGGCGCA
AAACATGTGTATGGTATTGATATGTCCTCCATCATTGATCACGCTAAAGA
AATTGTTAAACAAAATGGATTTGAAAAAGGTAAggctttgtttattttta
aagcAGCAGTGTATCTCAAAGTAGTCTAAagagaaaaaatagaaagattt
cctttttttaaataatgccCCAATGTTTGAAcgtccatttttttcaaaag
cctGTTAAAATTGTTTTAGATATCACACTTATCAAAGGAAAGGTTGAAGA
GGTAACGTTACCAGTAGAAAAAGTTGATATCATCATCAGTGAATGGATGG
GATATTGTTTGTTATATGAATCCATGTTGGACACTGTCATCTACGCTCGT
GATAAATGGCTCAAACCTGATGGTCTCATGTTTCCAGACAAAGCATCGAT
GTGGATAACAGCTATTGAAGACCGTGATTATAAAGAAGAAAAGATCAACT
GGTGGGATAATGTTTATGGATTCGACATGAGCCATATTCGTAACGTAGCG
TTAAACGAACCCATCGTTGATGTTGTTGAACATAGACAAATAGCAACTGA
TGCCTGTCGCTTCAAGGTAATTTAACATACATTATGATTACGTTTTGGCA
TAATGACGAAAAGAATTTCTTCACCTGAATTTTTAAGGTTGATACTGACA
TTCTGAATGCAAAACAGACTTTCTTATGCAGCTTCATATTTTTAATTATT
AGATTAATTAAGGAATCTTATGCATGATGATGAAAAGAATTTCTTCACCT
GAATTTCTAAGGTTGATACTGACATTCTGAATGCAAAACAAACTGTTTCC
GTACACCATTATTTATTAACCATCCCAATTTACTTTTTAGGGAAGAATGT
GCaagtatttttaaaattaattagaTTTTTTACTGCATAACGATGAAAAG
AATTTCTTCACCTGAATTTCAAGGTTGATAACGACATTCTGAATGCAACA
AAAGTCCTcagttttttctgtttattCAGACTGGTCTGTTCTCTTCTGTA
TTGGTTGCAGTGAAATAATTTAAAGTTGAATTGTGATGAAAAGAATGAAT
TTCTTCACCTGAATTTCAAGGTTGATAACGACATTCTGAATGCAACAAAA
GTCCTcagttttttctgtttattCAGACTGGTCTGTTCTCTTCTGTATTG
GTTGCAGTGAAATAATTTAAAGTTGAATTGTGATGAAAAGAATGAATTTC
TTCACCTGAAGTTTTACCCAGGTTGAAATCTGACATTCTGAATTCGAAAG
TCAATTATATTGATACCAAATTGAAACAATTAGATGAACTACTTGATTTA
TGTGTTTCTTATTTCTCATATTTCAGGACCTCGACCTTTTAACATGCAAA
GTTGAAGATTTAGCGTTCACAGCTCCCTTCAAGATAGCAGCACGTCGGGA
TGACTACCTTCACGCTTTTGTTGTCTACTTCAATGTCGAATTTGCTCCTT
GTCATAAATTCACTGGATTCTCAACAGGTGATTACATGATTACATCATTC
TATCTTGACTAAAGTGTCTGCAACTGTAGACTAAACTTGGCTTTTGGTTA
TCCTTTTTTAAGATTCTTCTTGGCATTGTTTTACTTAATCATAGCAGCGC
AAACTTCTCAACCAGACCAGCCCTAAATTCTGCTTATTCCTTGTGTTACC
GCTGCAACGTTTCCTCTCGATTTTAATATTGTTACTGTTTGACggtttat
taaattttaaaaatatgaaattctcCTTCCTAGGTCCCGAAGCAAGATAC
ACTCATTGGAAGCAGACGGTGTTTTACATCAACGAACCGATTACAGCAAA
ACGTGGTGAAGTTGTGACCGGTGAATTTATTATAAAACCTAACGATCGAA
ACAATGTAAGTCTTTCGActtttttaactcgaacaatcCGCCCTTTTTAC
TGGTTGGTTTTATTGGTGGTTTTAGGTTGGGAAAGTagattaaattttta
aaaattggaaaattggaagATATCGAAATTCAACGAATCTTTTCGATACA
CCAGCCGAATTCAAGAAATTCTAATTGTGTCTAACTACGAAGCTGCATAA
TGATGAAAAGAATTTCTTCACCTGAAGCATATACTCGATATGTGCCACAA
GATGAAAATGACAATCTGAATGCACACCTTGTCACATCTTGATAGAATTA
GCTGATTTCCTATTGCTATTCGCAATCTCGCTGATTCAACCAATATTTCA
ATCTAAATGTTTGCACCTTTTGTTTCAGCGCGACTTGGATCTTGAGATCA
CCCATGAATTCACAGGAGAGTTAATGACGACCAAAGATCATCACACGTAC
AAAATGAGATAAGGAGCGAACCAGAAGAGAGTTGTAGAGTAAAACTGGCT
TCCATTTTAGCCCTTACATACCGACACGTGAAAACCGACACCTTGTTCAT
CAAGCCCTTCTCTGGTATCAATTCTGATCAGAAGACTTGGTAGTGTCATT
TTCTATAGCAACTAGACTGNCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013321	XLOC_013321	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000460	supercontig	sc0000460:48711..55582 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
308.381	326.525	258.021	227.563	265.315	219.323	210.436	248.852	245.659	225.611	336.186	343.191	783.682	843.844	381.204	364.225	244.048	318.324	206.491	230.829	471.594	455.678	452.023	451.422	423.431	502.327	236.693	388.224	292.342	343.862

Blast

[Close]

BLAST of TCONS_00023710 vs. Swiss-Prot (Human)
Match: ANM1 (Protein arginine N-methyltransferase 1 OS=Homo sapiens GN=PRMT1 PE=1 SV=2)

HSP 1 Score: 473.396 bits (1217), Expect = 1.441e-164
Identity = 221/334 (66.17%), Postives = 269/334 (80.54%), Query Frame = 2

Query:  257 SDEKPAVNDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYNNRHLFKGKVVLDVGCGTGILSMFAKKAGAKHVYGIDMSSIIDHAKEIVKQNGFEKDITLIKGKVEEVTLPVEKVDIIISEWMGYCLLYESMLDTVIYARDKWLKPDGLMFPDKASMWITAIEDRDYKEEKINWWDNVYGFDMSHIRNVALNEPIVDVVEHRQIATDACRFKDLDLLTCKVEDLAFTAPFKIAARRDDYLHAFVVYFNVEFAPCHKFTGFSTGPEARYTHWKQTVFYINEPITAKRGEVVTGEFIIKPNDRNNRDLDLEITHEFTGELMTTKDHHTYKMR 1258
            S EKP   DMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSM++NRHLFK KVVLDVG GTGIL MFA KAGA+ V GI+ SSI D+A +IVK N  +  +T+IKGKVEEV LPVEKVDIIISEWMGYCL YESML+TV+YARDKWL PDGL+FPD+A++++TAIEDR YK+ KI+WW+NVYGFDMS I++VA+ EP+VDVV+ +Q+ T+AC  K++D+ T KVEDL FT+PF +  +R+DY+HA V YFN+EF  CHK TGFST PE+ YTHWKQTVFY+ + +T K GE + G   ++PN +NNRDLD  I  +F G+L        Y+MR
Sbjct:   28 SSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 361

The following BLAST results are available for this feature:

BLAST of TCONS_00023710 vs. Swiss-Prot (Human)

BLAST of TCONS_00023710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ANM1	1.441e-164	66.17	Protein arginine N-methyltransferase 1 OS=Homo sap...	[more]

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TCONS_00023710 (transcript) - C. hemisphaerica